RNA–Protein interactions for RNA: ENST00000592244.1

LIG3-214, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 440 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-214ENST00000592244 SLC4A10Q6U841 1118 aa13.91□□□□□ -0.18
LIG3-214ENST00000592244 SLC51AQ86UW1 340 aa13.91□□□□□ -0.18
LIG3-214ENST00000592244 CNTROBQ8N137 903 aa13.91□□□□□ -0.18
LIG3-214ENST00000592244 DNAJC5GQ8N7S2 189 aa13.91□□□□□ -0.18
LIG3-214ENST00000592244 SRCIN1Q9C0H9 1055 aa13.91□□□□□ -0.18
LIG3-214ENST00000592244 ANKRD2Q9GZV1 360 aa13.91□□□□□ -0.18
LIG3-214ENST00000592244 LAMB2P55268 1798 aa13.91□□□□□ -0.18
LIG3-214ENST00000592244 PTPRCP08575 1304 aa13.9□□□□□ -0.18
LIG3-214ENST00000592244 ANKRD18BA2A2Z9 1011 aa13.9□□□□□ -0.18
LIG3-214ENST00000592244 F6X3S4 739 aa13.9□□□□□ -0.18
LIG3-214ENST00000592244 ECE2O60344 883 aa13.9□□□□□ -0.18
LIG3-214ENST00000592244 CT47B1P0C2W7 299 aaPredicted RBP13.9□□□□□ -0.18
LIG3-214ENST00000592244 ITGA6P23229 1130 aa13.9□□□□□ -0.18
LIG3-214ENST00000592244 IFIT5Q13325 482 aaKnown RBP13.9□□□□□ -0.18
LIG3-214ENST00000592244 DBNDD1Q9H9R9 158 aa13.9□□□□□ -0.18
LIG3-214ENST00000592244 TMEM88BA6NKF7 163 aa13.89□□□□□ -0.19
LIG3-214ENST00000592244 GRM8O00222 908 aa13.89□□□□□ -0.19
LIG3-214ENST00000592244 CSF1RP07333 972 aa13.89□□□□□ -0.19
LIG3-214ENST00000592244 ALDH1L2Q3SY69 923 aa13.89□□□□□ -0.19
LIG3-214ENST00000592244 TAF7LQ5H9L4 462 aa13.89□□□□□ -0.19
LIG3-214ENST00000592244 ZC3H15Q8WU90 426 aaKnown RBP13.89□□□□□ -0.19
LIG3-214ENST00000592244 DPF2Q92785 391 aa13.89□□□□□ -0.19
LIG3-214ENST00000592244 MINPP1Q9UNW1 487 aa13.89□□□□□ -0.19
LIG3-214ENST00000592244 LEMD3Q9Y2U8 911 aa13.89□□□□□ -0.19
LIG3-214ENST00000592244 CHMP3Q9Y3E7 222 aa13.89□□□□□ -0.19
LIG3-214ENST00000592244 COL4A5P29400 1685 aa13.88□□□□□ -0.19
LIG3-214ENST00000592244 KCNJ4P48050 445 aa13.88□□□□□ -0.19
LIG3-214ENST00000592244 CASP7P55210 303 aa13.88□□□□□ -0.19
LIG3-214ENST00000592244 HTRA3P83110 453 aa13.88□□□□□ -0.19
LIG3-214ENST00000592244 DOK7Q18PE1 504 aa13.88□□□□□ -0.19
LIG3-214ENST00000592244 CCDC57Q2TAC2 916 aa13.88□□□□□ -0.19
LIG3-214ENST00000592244 MAP1SQ66K74 1059 aaPredicted RBP13.88□□□□□ -0.19
LIG3-214ENST00000592244 PODNQ7Z5L7 613 aa13.88□□□□□ -0.19
LIG3-214ENST00000592244 CNOT7Q9UIV1 285 aaKnown RBP13.88□□□□□ -0.19
LIG3-214ENST00000592244 CACNA1FO60840 1977 aa13.88□□□□□ -0.19
LIG3-214ENST00000592244 PASKQ96RG2 1323 aa13.88□□□□□ -0.19
LIG3-214ENST00000592244 LRRC37AA6NMS7 1700 aa13.87□□□□□ -0.19
LIG3-214ENST00000592244 YDJCA8MPS7 323 aa13.87□□□□□ -0.19
LIG3-214ENST00000592244 PSMD14O00487 310 aa13.87□□□□□ -0.19
LIG3-214ENST00000592244 ITGBL1O95965 494 aaPredicted RBP13.87□□□□□ -0.19
LIG3-214ENST00000592244 FAM161AQ3B820 660 aa13.87□□□□□ -0.19
LIG3-214ENST00000592244 DIEXFQ68CQ4 756 aaKnown RBP13.87□□□□□ -0.19
LIG3-214ENST00000592244 MRPL50Q8N5N7 158 aaKnown RBP13.87□□□□□ -0.19
LIG3-214ENST00000592244 CCT4P50991 539 aaKnown RBP13.86□□□□□ -0.19
LIG3-214ENST00000592244 MICALL2Q8IY33 904 aa13.86□□□□□ -0.19
LIG3-214ENST00000592244 JMYQ8N9B5 988 aa13.86□□□□□ -0.19
LIG3-214ENST00000592244 SMC4Q9NTJ3 1288 aa13.86□□□□□ -0.19
LIG3-214ENST00000592244 MED23Q9ULK4 1368 aa13.85□□□□□ -0.19
LIG3-214ENST00000592244 DUOX1Q9NRD9 1551 aa13.85□□□□□ -0.19
LIG3-214ENST00000592244 VIL1P09327 827 aaKnown RBP13.85□□□□□ -0.19
LIG3-214ENST00000592244 LMBR1LQ6UX01 489 aa13.85□□□□□ -0.19
LIG3-214ENST00000592244 AGBL3Q8NEM8 1001 aa13.85□□□□□ -0.19
LIG3-214ENST00000592244 SSH1Q8WYL5 1049 aa13.85□□□□□ -0.19
LIG3-214ENST00000592244 GPR101Q96P66 508 aaPredicted RBP13.85□□□□□ -0.19
LIG3-214ENST00000592244 COA1Q9GZY4 146 aa13.85□□□□□ -0.19
LIG3-214ENST00000592244 HDAC5Q9UQL6 1122 aa13.85□□□□□ -0.19
LIG3-214ENST00000592244 ZBTB12Q9Y330 459 aaPredicted RBP13.85□□□□□ -0.19
LIG3-214ENST00000592244 USP17L3A6NCW0 530 aa13.84□□□□□ -0.19
LIG3-214ENST00000592244 USP17L4A6NCW7 530 aa13.84□□□□□ -0.19
LIG3-214ENST00000592244 FOXO4P98177 505 aa13.84□□□□□ -0.19
LIG3-214ENST00000592244 USP17L1Q7RTZ2 530 aa13.84□□□□□ -0.19
LIG3-214ENST00000592244 ABT1Q9ULW3 272 aaKnown RBP13.84□□□□□ -0.19
LIG3-214ENST00000592244 ZNF804BA4D1E1 1349 aa13.84□□□□□ -0.19
LIG3-214ENST00000592244 MMP14P50281 582 aa13.83□□□□□ -0.2
LIG3-214ENST00000592244 RSBN1LQ6PCB5 846 aaPredicted RBP13.83□□□□□ -0.2
LIG3-214ENST00000592244 LDHAL6AQ6ZMR3 332 aa13.83□□□□□ -0.2
LIG3-214ENST00000592244 CDC37L1Q7L3B6 337 aa13.83□□□□□ -0.2
LIG3-214ENST00000592244 TRMT2AQ8IZ69 625 aaKnown RBP13.83□□□□□ -0.2
LIG3-214ENST00000592244 OGFOD1Q8N543 542 aa13.83□□□□□ -0.2
LIG3-214ENST00000592244 CDCA7LQ96GN5 454 aa13.83□□□□□ -0.2
LIG3-214ENST00000592244 CNNM1Q9NRU3 951 aa13.83□□□□□ -0.2
LIG3-214ENST00000592244 PGAP2Q9UHJ9 254 aa13.83□□□□□ -0.2
LIG3-214ENST00000592244 MYO3BQ8WXR4 1341 aa13.83□□□□□ -0.2
LIG3-214ENST00000592244 CHRNDQ07001 517 aa13.82□□□□□ -0.2
LIG3-214ENST00000592244 DCPSQ96C86 337 aaKnown RBP13.82□□□□□ -0.2
LIG3-214ENST00000592244 API5Q9BZZ5 524 aaKnown RBP13.82□□□□□ -0.2
LIG3-214ENST00000592244 MKRN1Q9UHC7 482 aaKnown RBP13.82□□□□□ -0.2
LIG3-214ENST00000592244 TAF1P21675 1872 aa13.82□□□□□ -0.2
LIG3-214ENST00000592244 CNTNAP1P78357 1384 aa13.82□□□□□ -0.2
LIG3-214ENST00000592244 USP17L8P0C7I0 530 aa13.81□□□□□ -0.2
LIG3-214ENST00000592244 DEFB115Q30KQ5 88 aa13.81□□□□□ -0.2
LIG3-214ENST00000592244 TBC1D10BQ4KMP7 808 aaPredicted RBP13.81□□□□□ -0.2
LIG3-214ENST00000592244 STRIP1Q5VSL9 837 aa13.81□□□□□ -0.2
LIG3-214ENST00000592244 TRPM4Q8TD43 1214 aa13.81□□□□□ -0.2
LIG3-214ENST00000592244 FBXW7Q969H0 707 aa13.81□□□□□ -0.2
LIG3-214ENST00000592244 UTYO14607 1347 aa13.81□□□□□ -0.2
LIG3-214ENST00000592244 ECE1P42892 770 aa13.8□□□□□ -0.2
LIG3-214ENST00000592244 KIF4BQ2VIQ3 1234 aa13.8□□□□□ -0.2
LIG3-214ENST00000592244 RBM26Q5T8P6 1007 aaKnown RBP13.8□□□□□ -0.2
LIG3-214ENST00000592244 SAMD7Q7Z3H4 446 aa13.8□□□□□ -0.2
LIG3-214ENST00000592244 ZNF804AQ7Z570 1209 aa13.8□□□□□ -0.2
LIG3-214ENST00000592244 KCNQ5Q9NR82 932 aa13.8□□□□□ -0.2
LIG3-214ENST00000592244 KIF16BQ96L93 1317 aa13.8□□□□□ -0.2
LIG3-214ENST00000592244 ZNF609O15014 1411 aa13.8□□□□□ -0.2
LIG3-214ENST00000592244 LTBP1Q14766 1721 aa13.79□□□□□ -0.2
LIG3-214ENST00000592244 ADAMTSL1Q8N6G6 1762 aa13.79□□□□□ -0.2
LIG3-214ENST00000592244 RASSF10A6NK89 507 aa13.79□□□□□ -0.2
LIG3-214ENST00000592244 IPO8O15397 1037 aaKnown RBP13.79□□□□□ -0.2
LIG3-214ENST00000592244 CELF2O95319 508 aaKnown RBP13.79□□□□□ -0.2
LIG3-214ENST00000592244 NBPF7P0C2Y1 421 aaPredicted RBP13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms