RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	NEUROD6	Q96NK8	337 aa		18.62	■□□□□ 0.57
DDX39A-209	ENST00000589318	ANTXR1	Q9H6X2	564 aa		18.62	■□□□□ 0.57
DDX39A-209	ENST00000589318	ABCC12	Q96J65	1359 aa		18.62	■□□□□ 0.57
DDX39A-209	ENST00000589318	TRAPPC3L	Q5T215	181 aa		18.61	■□□□□ 0.57
DDX39A-209	ENST00000589318	EDC3	Q96F86	508 aa	Known RBP	18.61	■□□□□ 0.57
DDX39A-209	ENST00000589318	HAUS7	Q99871	368 aa		18.61	■□□□□ 0.57
DDX39A-209	ENST00000589318	SEC31B	Q9NQW1	1179 aa		18.61	■□□□□ 0.57
DDX39A-209	ENST00000589318	PHF14	O94880	888 aa		18.61	■□□□□ 0.57
DDX39A-209	ENST00000589318	HSP90B1	P14625	803 aa	Known RBP	18.61	■□□□□ 0.57
DDX39A-209	ENST00000589318	CCDC152	Q4G0S7	254 aa		18.61	■□□□□ 0.57
DDX39A-209	ENST00000589318	C3orf67	Q6ZVT6	689 aa		18.61	■□□□□ 0.57
DDX39A-209	ENST00000589318	PDCL3	Q9H2J4	239 aa		18.61	■□□□□ 0.57
DDX39A-209	ENST00000589318	TAF1	P21675	1872 aa		18.6	■□□□□ 0.57
DDX39A-209	ENST00000589318	ADRA2B	P18089	450 aa		18.6	■□□□□ 0.57
DDX39A-209	ENST00000589318	CWC27	Q6UX04	472 aa	Known RBP	18.6	■□□□□ 0.57
DDX39A-209	ENST00000589318	CNNM1	Q9NRU3	951 aa		18.6	■□□□□ 0.57
DDX39A-209	ENST00000589318	AKAP2	Q9Y2D5	859 aa		18.6	■□□□□ 0.57
DDX39A-209	ENST00000589318	NDUFB9	Q9Y6M9	179 aa		18.6	■□□□□ 0.57
DDX39A-209	ENST00000589318	ARAP2	Q8WZ64	1704 aa		18.6	■□□□□ 0.57
DDX39A-209	ENST00000589318	TNS1	Q9HBL0	1735 aa	Known RBP	18.59	■□□□□ 0.57
DDX39A-209	ENST00000589318	ADORA1	P30542	326 aa		18.59	■□□□□ 0.57
DDX39A-209	ENST00000589318	RFC4	P35249	363 aa		18.59	■□□□□ 0.57
DDX39A-209	ENST00000589318	METTL24	Q5JXM2	366 aa		18.59	■□□□□ 0.57
DDX39A-209	ENST00000589318	SLC10A5	Q5PT55	438 aa		18.59	■□□□□ 0.57
DDX39A-209	ENST00000589318	SETDB2	Q96T68	719 aa		18.59	■□□□□ 0.57
DDX39A-209	ENST00000589318	ANO2	Q9NQ90	1003 aa		18.59	■□□□□ 0.57
DDX39A-209	ENST00000589318	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	18.59	■□□□□ 0.57
DDX39A-209	ENST00000589318	EPB41L2	O43491	1005 aa	Known RBP	18.59	■□□□□ 0.57
DDX39A-209	ENST00000589318	TXNRD1	Q16881	649 aa		18.59	■□□□□ 0.57
DDX39A-209	ENST00000589318	XAGE2	Q96GT9	111 aa		18.59	■□□□□ 0.57
DDX39A-209	ENST00000589318	DIAPH3	Q9NSV4	1193 aa		18.59	■□□□□ 0.57
DDX39A-209	ENST00000589318		A0A1B0GUL6	1792 aa		18.58	■□□□□ 0.57
DDX39A-209	ENST00000589318	SF3B3	Q15393	1217 aa	Known RBP	18.58	■□□□□ 0.56
DDX39A-209	ENST00000589318	SNX21	Q969T3	373 aa		18.58	■□□□□ 0.56
DDX39A-209	ENST00000589318	AKAP11	Q9UKA4	1901 aa		18.57	■□□□□ 0.56
DDX39A-209	ENST00000589318	PLSCR1	O15162	318 aa		18.57	■□□□□ 0.56
DDX39A-209	ENST00000589318	PDE8B	O95263	885 aa		18.57	■□□□□ 0.56
DDX39A-209	ENST00000589318	POTEA	Q6S8J7	498 aa		18.57	■□□□□ 0.56
DDX39A-209	ENST00000589318	FSD1	Q9BTV5	496 aa		18.57	■□□□□ 0.56
DDX39A-209	ENST00000589318	NYX	Q9GZU5	481 aa		18.57	■□□□□ 0.56
DDX39A-209	ENST00000589318	LSG1	Q9H089	658 aa	Known RBP	18.57	■□□□□ 0.56
DDX39A-209	ENST00000589318	RFX7	Q2KHR2	1363 aa		18.57	■□□□□ 0.56
DDX39A-209	ENST00000589318	RAD50	Q92878	1312 aa		18.57	■□□□□ 0.56
DDX39A-209	ENST00000589318	CD2BP2	O95400	341 aa	Known RBP	18.57	■□□□□ 0.56
DDX39A-209	ENST00000589318	ATP2B3	Q16720	1220 aa		18.57	■□□□□ 0.56
DDX39A-209	ENST00000589318	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	18.57	■□□□□ 0.56
DDX39A-209	ENST00000589318	FAM227B	Q96M60	508 aa		18.57	■□□□□ 0.56
DDX39A-209	ENST00000589318	SNRK	Q9NRH2	765 aa		18.57	■□□□□ 0.56
DDX39A-209	ENST00000589318	TNRC6C	Q9HCJ0	1690 aa	Known RBP	18.56	■□□□□ 0.56
DDX39A-209	ENST00000589318	MROH5	Q6ZUA9	1318 aa		18.56	■□□□□ 0.56
DDX39A-209	ENST00000589318	HIP1	O00291	1037 aa		18.56	■□□□□ 0.56
DDX39A-209	ENST00000589318	SSFA2	P28290	1259 aa		18.56	■□□□□ 0.56
DDX39A-209	ENST00000589318	NMI	Q13287	307 aa	Predicted RBP	18.56	■□□□□ 0.56
DDX39A-209	ENST00000589318	IL17RA	Q96F46	866 aa		18.56	■□□□□ 0.56
DDX39A-209	ENST00000589318	DNAJC2	Q99543	621 aa	Known RBP	18.56	■□□□□ 0.56
DDX39A-209	ENST00000589318	FGFR2	P21802	821 aa		18.55	■□□□□ 0.56
DDX39A-209	ENST00000589318	NBPF5P	Q86XG9	351 aa	Predicted RBP	18.55	■□□□□ 0.56
DDX39A-209	ENST00000589318	FBXO41	Q8TF61	875 aa		18.55	■□□□□ 0.56
DDX39A-209	ENST00000589318	RUFY2	Q8WXA3	655 aa		18.55	■□□□□ 0.56
DDX39A-209	ENST00000589318		A0A0D9SFI3	127 aa		18.55	■□□□□ 0.56
DDX39A-209	ENST00000589318	NFIX	Q14938	502 aa		18.55	■□□□□ 0.56
DDX39A-209	ENST00000589318	RABEP1	Q15276	862 aa		18.55	■□□□□ 0.56
DDX39A-209	ENST00000589318	PALD1	Q9ULE6	856 aa		18.55	■□□□□ 0.56
DDX39A-209	ENST00000589318	CARMIL3	Q8ND23	1372 aa		18.54	■□□□□ 0.56
DDX39A-209	ENST00000589318	MED23	Q9ULK4	1368 aa		18.54	■□□□□ 0.56
DDX39A-209	ENST00000589318	RGPD3	A6NKT7	1758 aa	Predicted RBP	18.54	■□□□□ 0.56
DDX39A-209	ENST00000589318	RGPD4	Q7Z3J3	1758 aa		18.54	■□□□□ 0.56
DDX39A-209	ENST00000589318	ESPN	B1AK53	854 aa		18.54	■□□□□ 0.56
DDX39A-209	ENST00000589318	MCM4	P33991	863 aa		18.54	■□□□□ 0.56
DDX39A-209	ENST00000589318	DDX46	Q7L014	1031 aa	Known RBP	18.54	■□□□□ 0.56
DDX39A-209	ENST00000589318	KBTBD3	Q8NAB2	608 aa		18.54	■□□□□ 0.56
DDX39A-209	ENST00000589318	MPHOSPH8	Q99549	860 aa		18.54	■□□□□ 0.56
DDX39A-209	ENST00000589318	IFIT1	P09914	478 aa	Known RBP	18.53	■□□□□ 0.56
DDX39A-209	ENST00000589318	GYS1	P13807	737 aa		18.53	■□□□□ 0.56
DDX39A-209	ENST00000589318	TPTE2	Q6XPS3	522 aa		18.53	■□□□□ 0.56
DDX39A-209	ENST00000589318	HELB	Q8NG08	1087 aa	Predicted RBP	18.53	■□□□□ 0.56
DDX39A-209	ENST00000589318	PAG1	Q9NWQ8	432 aa		18.53	■□□□□ 0.56
DDX39A-209	ENST00000589318	APBA3	O96018	575 aa		18.53	■□□□□ 0.56
DDX39A-209	ENST00000589318	CHGB	P05060	677 aa		18.53	■□□□□ 0.56
DDX39A-209	ENST00000589318	GTF2E1	P29083	439 aa	Predicted RBP	18.53	■□□□□ 0.56
DDX39A-209	ENST00000589318	HSPA4	P34932	840 aa		18.53	■□□□□ 0.56
DDX39A-209	ENST00000589318	IGHMBP2	P38935	993 aa	Known RBP	18.53	■□□□□ 0.56
DDX39A-209	ENST00000589318	TERF1	P54274	439 aa		18.53	■□□□□ 0.56
DDX39A-209	ENST00000589318	SCARF1	Q14162	830 aa		18.53	■□□□□ 0.56
DDX39A-209	ENST00000589318	PUM3	Q15397	648 aa	Known RBP	18.53	■□□□□ 0.56
DDX39A-209	ENST00000589318	CCDC158	Q5M9N0	1113 aa		18.53	■□□□□ 0.56
DDX39A-209	ENST00000589318	GOLIM4	O00461	696 aa		18.52	■□□□□ 0.56
DDX39A-209	ENST00000589318	ANAPC15	P60006	121 aa		18.52	■□□□□ 0.56
DDX39A-209	ENST00000589318	PTH1R	Q03431	593 aa		18.52	■□□□□ 0.56
DDX39A-209	ENST00000589318	HSCB	Q8IWL3	235 aa		18.52	■□□□□ 0.56
DDX39A-209	ENST00000589318	CCDC24	Q8N4L8	307 aa		18.52	■□□□□ 0.56
DDX39A-209	ENST00000589318	CDC5L	Q99459	802 aa	Known RBP	18.52	■□□□□ 0.56
DDX39A-209	ENST00000589318	DDX11L8	A8MPP1	907 aa		18.51	■□□□□ 0.55
DDX39A-209	ENST00000589318	ZNF827	Q17R98	1081 aa		18.51	■□□□□ 0.55
DDX39A-209	ENST00000589318	TTC39A	Q5SRH9	613 aa		18.51	■□□□□ 0.55
DDX39A-209	ENST00000589318	LPIN2	Q92539	896 aa		18.51	■□□□□ 0.55
DDX39A-209	ENST00000589318	SNAP23	O00161	211 aa		18.51	■□□□□ 0.55
DDX39A-209	ENST00000589318	TAF5L	O75529	589 aa		18.51	■□□□□ 0.55
DDX39A-209	ENST00000589318	PTMS	P20962	102 aa		18.51	■□□□□ 0.55
DDX39A-209	ENST00000589318	MCC	P23508	829 aa		18.51	■□□□□ 0.55

Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms