RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 EVC2Q86UK5 1308 aa5.54□□□□□ -1.52
LIG3-211ENST00000588713 MUC3AQ02505 3323 aa5.54□□□□□ -1.52
LIG3-211ENST00000588713 SHTN1A0MZ66 631 aa5.54□□□□□ -1.52
LIG3-211ENST00000588713 ST5P78524 1137 aa5.54□□□□□ -1.52
LIG3-211ENST00000588713 DDX10Q13206 875 aaKnown RBP5.54□□□□□ -1.52
LIG3-211ENST00000588713 TJAP1Q5JTD0 557 aa5.54□□□□□ -1.52
LIG3-211ENST00000588713 TBC1D9BQ66K14 1250 aa5.54□□□□□ -1.52
LIG3-211ENST00000588713 POTEEQ6S8J3 1075 aa5.54□□□□□ -1.52
LIG3-211ENST00000588713 NBPF11Q86T75 865 aa5.54□□□□□ -1.52
LIG3-211ENST00000588713 NIM1KQ8IY84 436 aa5.54□□□□□ -1.52
LIG3-211ENST00000588713 CNBD1Q8NA66 436 aa5.54□□□□□ -1.52
LIG3-211ENST00000588713 CD99L2Q8TCZ2 262 aa5.54□□□□□ -1.52
LIG3-211ENST00000588713 ZC3H15Q8WU90 426 aaKnown RBP5.54□□□□□ -1.52
LIG3-211ENST00000588713 P2RX7Q99572 595 aaKnown RBP5.54□□□□□ -1.52
LIG3-211ENST00000588713 EFCC1Q9HA90 598 aa5.54□□□□□ -1.52
LIG3-211ENST00000588713 SBNO2Q9Y2G9 1366 aa5.54□□□□□ -1.52
LIG3-211ENST00000588713 ARHGAP33O14559 1287 aa5.53□□□□□ -1.52
LIG3-211ENST00000588713 EVI5O60447 810 aa5.53□□□□□ -1.52
LIG3-211ENST00000588713 PHKG2P15735 406 aa5.53□□□□□ -1.52
LIG3-211ENST00000588713 RRS1Q15050 365 aaKnown RBP5.53□□□□□ -1.52
LIG3-211ENST00000588713 PLPP6Q8IY26 295 aa5.53□□□□□ -1.52
LIG3-211ENST00000588713 IFNL2Q8IZJ0 200 aa5.53□□□□□ -1.52
LIG3-211ENST00000588713 ERO1AQ96HE7 468 aa5.53□□□□□ -1.52
LIG3-211ENST00000588713 PPP4R2Q9NY27 417 aa5.53□□□□□ -1.52
LIG3-211ENST00000588713 MRC1P22897 1456 aa5.52□□□□□ -1.53
LIG3-211ENST00000588713 ZBED9Q6R2W3 1325 aa5.52□□□□□ -1.53
LIG3-211ENST00000588713 ANKRD26Q9UPS8 1709 aa5.52□□□□□ -1.53
LIG3-211ENST00000588713 ZNF609O15014 1411 aa5.52□□□□□ -1.53
LIG3-211ENST00000588713 DEKP35659 375 aaKnown RBP5.52□□□□□ -1.53
LIG3-211ENST00000588713 MRE11P49959 708 aa5.52□□□□□ -1.53
LIG3-211ENST00000588713 SREBF2Q12772 1141 aa5.52□□□□□ -1.53
LIG3-211ENST00000588713 SAMD7Q7Z3H4 446 aa5.52□□□□□ -1.53
LIG3-211ENST00000588713 DNAJC10Q8IXB1 793 aa5.52□□□□□ -1.53
LIG3-211ENST00000588713 PTCD2Q8WV60 388 aaKnown RBP5.52□□□□□ -1.53
LIG3-211ENST00000588713 DCPSQ96C86 337 aaKnown RBP5.52□□□□□ -1.53
LIG3-211ENST00000588713 SHISA4Q96DD7 197 aa5.52□□□□□ -1.53
LIG3-211ENST00000588713 NOP58Q9Y2X3 529 aaKnown RBP5.52□□□□□ -1.53
LIG3-211ENST00000588713 PTCH2Q9Y6C5 1203 aa5.52□□□□□ -1.53
LIG3-211ENST00000588713 ZNF831Q5JPB2 1677 aa5.52□□□□□ -1.53
LIG3-211ENST00000588713 NPC1L1Q9UHC9 1359 aa5.52□□□□□ -1.53
LIG3-211ENST00000588713 PPIP5K2O43314 1243 aa5.51□□□□□ -1.53
LIG3-211ENST00000588713 TBC1D12O60347 775 aa5.51□□□□□ -1.53
LIG3-211ENST00000588713 NPR1P16066 1061 aa5.51□□□□□ -1.53
LIG3-211ENST00000588713 TM4SF4P48230 202 aa5.51□□□□□ -1.53
LIG3-211ENST00000588713 CABP4P57796 275 aa5.51□□□□□ -1.53
LIG3-211ENST00000588713 FOXK1P85037 733 aa5.51□□□□□ -1.53
LIG3-211ENST00000588713 CXCL9Q07325 125 aa5.51□□□□□ -1.53
LIG3-211ENST00000588713 LRIT3Q3SXY7 679 aa5.51□□□□□ -1.53
LIG3-211ENST00000588713 RBM26Q5T8P6 1007 aaKnown RBP5.51□□□□□ -1.53
LIG3-211ENST00000588713 ADGRD1Q6QNK2 874 aa5.51□□□□□ -1.53
LIG3-211ENST00000588713 MOB2Q70IA6 237 aa5.51□□□□□ -1.53
LIG3-211ENST00000588713 TDHQ8IZJ6 230 aa5.51□□□□□ -1.53
LIG3-211ENST00000588713 TMC1Q8TDI8 760 aa5.51□□□□□ -1.53
LIG3-211ENST00000588713 SH3TC2Q8TF17 1288 aa5.51□□□□□ -1.53
LIG3-211ENST00000588713 PSMD1Q99460 953 aa5.51□□□□□ -1.53
LIG3-211ENST00000588713 GPHNQ9NQX3 736 aaPredicted RBP5.51□□□□□ -1.53
LIG3-211ENST00000588713 ZBTB4Q9P1Z0 1013 aaPredicted RBP5.51□□□□□ -1.53
LIG3-211ENST00000588713 HCSTQ9UBK5 93 aa5.51□□□□□ -1.53
LIG3-211ENST00000588713 ZBTB1Q9Y2K1 713 aa5.51□□□□□ -1.53
LIG3-211ENST00000588713 ZNF330Q9Y3S2 320 aaPredicted RBP5.51□□□□□ -1.53
LIG3-211ENST00000588713 ARFGEF2Q9Y6D5 1785 aa5.51□□□□□ -1.53
LIG3-211ENST00000588713 TTC28Q96AY4 2481 aa5.5□□□□□ -1.53
LIG3-211ENST00000588713 UBE2Q2LH0YL09 131 aa5.5□□□□□ -1.53
LIG3-211ENST00000588713 H7C1D1 291 aa5.5□□□□□ -1.53
LIG3-211ENST00000588713 CANXP27824 592 aaKnown RBP5.5□□□□□ -1.53
LIG3-211ENST00000588713 TTLL12Q14166 644 aaPredicted RBP5.5□□□□□ -1.53
LIG3-211ENST00000588713 TBC1D10BQ4KMP7 808 aaPredicted RBP5.5□□□□□ -1.53
LIG3-211ENST00000588713 HSP90AB2PQ58FF8 381 aa5.5□□□□□ -1.53
LIG3-211ENST00000588713 ZNF697Q5TEC3 545 aa5.5□□□□□ -1.53
LIG3-211ENST00000588713 NUTM1Q86Y26 1132 aa5.5□□□□□ -1.53
LIG3-211ENST00000588713 SULF1Q8IWU6 871 aa5.5□□□□□ -1.53
LIG3-211ENST00000588713 HS6ST3Q8IZP7 471 aa5.5□□□□□ -1.53
LIG3-211ENST00000588713 CDCA5Q96FF9 252 aa5.5□□□□□ -1.53
LIG3-211ENST00000588713 COG3Q96JB2 828 aa5.5□□□□□ -1.53
LIG3-211ENST00000588713 STAC3Q96MF2 364 aa5.5□□□□□ -1.53
LIG3-211ENST00000588713 CDX2Q99626 313 aaPredicted RBP5.5□□□□□ -1.53
LIG3-211ENST00000588713 C1QTNF1Q9BXJ1 281 aa5.5□□□□□ -1.53
LIG3-211ENST00000588713 CNOT7Q9UIV1 285 aaKnown RBP5.5□□□□□ -1.53
LIG3-211ENST00000588713 ZMYND8Q9ULU4 1186 aaPredicted RBP5.5□□□□□ -1.53
LIG3-211ENST00000588713 ARIH1Q9Y4X5 557 aaPredicted RBP5.5□□□□□ -1.53
LIG3-211ENST00000588713 RTL1A6NKG5 1358 aa5.5□□□□□ -1.53
LIG3-211ENST00000588713 PRUNE2Q8WUY3 3088 aa5.5□□□□□ -1.53
LIG3-211ENST00000588713 TJP1Q07157 1748 aa5.49□□□□□ -1.53
LIG3-211ENST00000588713 LAMA2P24043 3122 aaKnown RBP5.49□□□□□ -1.53
LIG3-211ENST00000588713 TCERG1O14776 1098 aaKnown RBP5.49□□□□□ -1.53
LIG3-211ENST00000588713 RAD17O75943 681 aa5.49□□□□□ -1.53
LIG3-211ENST00000588713 FARP2O94887 1054 aaPredicted RBP5.49□□□□□ -1.53
LIG3-211ENST00000588713 BMP8BP34820 402 aa5.49□□□□□ -1.53
LIG3-211ENST00000588713 PSEN2P49810 448 aa5.49□□□□□ -1.53
LIG3-211ENST00000588713 HNRNPUQ00839 825 aaKnown RBP eCLIP5.49□□□□□ -1.53
LIG3-211ENST00000588713 CAP1Q01518 475 aa5.49□□□□□ -1.53
LIG3-211ENST00000588713 DSG2Q14126 1118 aa5.49□□□□□ -1.53
LIG3-211ENST00000588713 AOC3Q16853 763 aa5.49□□□□□ -1.53
LIG3-211ENST00000588713 PPP4R3BQ5MIZ7 849 aa5.49□□□□□ -1.53
LIG3-211ENST00000588713 HDGFL2Q7Z4V5 671 aaPredicted RBP5.49□□□□□ -1.53
LIG3-211ENST00000588713 MYLIPQ8WY64 445 aa5.49□□□□□ -1.53
LIG3-211ENST00000588713 SETDB2Q96T68 719 aa5.49□□□□□ -1.53
LIG3-211ENST00000588713 GDF15Q99988 308 aa5.49□□□□□ -1.53
LIG3-211ENST00000588713 CFHR5Q9BXR6 569 aa5.49□□□□□ -1.53
LIG3-211ENST00000588713 PLA2G2EQ9NZK7 142 aa5.49□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms