RNA–Protein interactions for RNA: ENST00000588617.1

VMP1-208, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 884 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-208ENST00000588617 TCEAL1Q15170 157 aa11.06□□□□□ -0.64
VMP1-208ENST00000588617 SPACA7Q96KW9 195 aa11.06□□□□□ -0.64
VMP1-208ENST00000588617 ZNF408Q9H9D4 720 aa11.06□□□□□ -0.64
VMP1-208ENST00000588617 EFR3BQ9Y2G0 817 aa11.06□□□□□ -0.64
VMP1-208ENST00000588617 MRPL42Q9Y6G3 142 aaKnown RBP11.06□□□□□ -0.64
VMP1-208ENST00000588617 A0A1W2PNR3 127 aa11.05□□□□□ -0.64
VMP1-208ENST00000588617 A0A1W2PP55 124 aa11.05□□□□□ -0.64
VMP1-208ENST00000588617 MSX1P28360 303 aa11.05□□□□□ -0.64
VMP1-208ENST00000588617 EIF4A3P38919 411 aaKnown RBP11.05□□□□□ -0.64
VMP1-208ENST00000588617 CYP4X1Q8N118 509 aa11.05□□□□□ -0.64
VMP1-208ENST00000588617 C3orf58Q8NDZ4 430 aa11.05□□□□□ -0.64
VMP1-208ENST00000588617 GLIS3Q8NEA6 775 aa11.05□□□□□ -0.64
VMP1-208ENST00000588617 TMEM74Q96NL1 305 aa11.05□□□□□ -0.64
VMP1-208ENST00000588617 TRIM56Q9BRZ2 755 aaKnown RBP11.05□□□□□ -0.64
VMP1-208ENST00000588617 UPP2O95045 317 aa11.04□□□□□ -0.64
VMP1-208ENST00000588617 EGFRP00533 1210 aa11.04□□□□□ -0.64
VMP1-208ENST00000588617 WDR44Q5JSH3 913 aa11.04□□□□□ -0.64
VMP1-208ENST00000588617 TIMMDC1Q9NPL8 285 aa11.04□□□□□ -0.64
VMP1-208ENST00000588617 LATS2Q9NRM7 1088 aa11.04□□□□□ -0.64
VMP1-208ENST00000588617 AKAP2Q9Y2D5 859 aa11.04□□□□□ -0.64
VMP1-208ENST00000588617 MRVI1Q9Y6F6 885 aa11.04□□□□□ -0.64
VMP1-208ENST00000588617 DGAT1O75907 488 aa11.03□□□□□ -0.64
VMP1-208ENST00000588617 EDN3P14138 238 aa11.03□□□□□ -0.64
VMP1-208ENST00000588617 SERINC3Q13530 473 aa11.03□□□□□ -0.64
VMP1-208ENST00000588617 MAP3K11Q16584 847 aa11.03□□□□□ -0.64
VMP1-208ENST00000588617 PKDCCQ504Y2 493 aa11.03□□□□□ -0.64
VMP1-208ENST00000588617 LYSMD3Q7Z3D4 306 aa11.03□□□□□ -0.64
VMP1-208ENST00000588617 ZNF296Q8WUU4 475 aaPredicted RBP11.03□□□□□ -0.64
VMP1-208ENST00000588617 EAF1Q96JC9 268 aaPredicted RBP11.03□□□□□ -0.64
VMP1-208ENST00000588617 OXCT2Q9BYC2 517 aaPredicted RBP11.03□□□□□ -0.64
VMP1-208ENST00000588617 GINM1Q9NU53 330 aa11.03□□□□□ -0.64
VMP1-208ENST00000588617 A0A1B0GTH6 734 aa11.02□□□□□ -0.65
VMP1-208ENST00000588617 FAM187AA6NFU0 413 aa11.02□□□□□ -0.65
VMP1-208ENST00000588617 CYP2E1P05181 493 aaPredicted RBP11.02□□□□□ -0.65
VMP1-208ENST00000588617 XRCC5P13010 732 aaKnown RBP11.02□□□□□ -0.65
VMP1-208ENST00000588617 HSD3B2P26439 372 aa11.02□□□□□ -0.65
VMP1-208ENST00000588617 ETFBP38117 255 aa11.02□□□□□ -0.65
VMP1-208ENST00000588617 VEGFBP49765 207 aa11.02□□□□□ -0.65
VMP1-208ENST00000588617 ANKS3Q6ZW76 656 aa11.02□□□□□ -0.65
VMP1-208ENST00000588617 LINC00528Q8N1L1 170 aa11.02□□□□□ -0.65
VMP1-208ENST00000588617 KANSL3Q9P2N6 904 aa11.02□□□□□ -0.65
VMP1-208ENST00000588617 RLBP1P12271 317 aa11.01□□□□□ -0.65
VMP1-208ENST00000588617 RHOQP17081 205 aa11.01□□□□□ -0.65
VMP1-208ENST00000588617 MAP3K10Q02779 954 aa11.01□□□□□ -0.65
VMP1-208ENST00000588617 DTHD1Q6ZMT9 781 aa11.01□□□□□ -0.65
VMP1-208ENST00000588617 MKL1Q969V6 931 aa11.01□□□□□ -0.65
VMP1-208ENST00000588617 TRIM55Q9BYV6 548 aa11.01□□□□□ -0.65
VMP1-208ENST00000588617 BRD7Q9NPI1 651 aa11.01□□□□□ -0.65
VMP1-208ENST00000588617 C11orf16Q9NQ32 467 aa11.01□□□□□ -0.65
VMP1-208ENST00000588617 PPM1HQ9ULR3 514 aa11.01□□□□□ -0.65
VMP1-208ENST00000588617 U2SURPO15042 1029 aaKnown RBP11□□□□□ -0.65
VMP1-208ENST00000588617 FBXO24O75426 580 aa11□□□□□ -0.65
VMP1-208ENST00000588617 SMPD1P17405 629 aa11□□□□□ -0.65
VMP1-208ENST00000588617 RNF217Q8TC41 542 aa11□□□□□ -0.65
VMP1-208ENST00000588617 CPLX3Q8WVH0 158 aa11□□□□□ -0.65
VMP1-208ENST00000588617 SRPK1Q96SB4 655 aaKnown RBP11□□□□□ -0.65
VMP1-208ENST00000588617 SIRPGQ9P1W8 387 aa11□□□□□ -0.65
VMP1-208ENST00000588617 STRIP2Q9ULQ0 834 aa11□□□□□ -0.65
VMP1-208ENST00000588617 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11□□□□□ -0.65
VMP1-208ENST00000588617 TMEM238LA0A1B0GVL6 79 aa10.99□□□□□ -0.65
VMP1-208ENST00000588617 PHF20L1A8MW92 1017 aa10.99□□□□□ -0.65
VMP1-208ENST00000588617 SASH3O75995 380 aa10.99□□□□□ -0.65
VMP1-208ENST00000588617 BMP2P12643 396 aa10.99□□□□□ -0.65
VMP1-208ENST00000588617 CTC1Q2NKJ3 1217 aa10.99□□□□□ -0.65
VMP1-208ENST00000588617 PEAR1Q5VY43 1037 aaPredicted RBP10.99□□□□□ -0.65
VMP1-208ENST00000588617 PRPF40BQ6NWY9 871 aaKnown RBP10.99□□□□□ -0.65
VMP1-208ENST00000588617 SV2BQ7L1I2 683 aa10.99□□□□□ -0.65
VMP1-208ENST00000588617 NT5C1AQ9BXI3 368 aa10.99□□□□□ -0.65
VMP1-208ENST00000588617 SOX9P48436 509 aa10.98□□□□□ -0.65
VMP1-208ENST00000588617 FAM160A1Q05DH4 1040 aa10.98□□□□□ -0.65
VMP1-208ENST00000588617 PTPROQ16827 1216 aa10.98□□□□□ -0.65
VMP1-208ENST00000588617 FBXL19Q6PCT2 694 aa10.98□□□□□ -0.65
VMP1-208ENST00000588617 HPS1Q92902 700 aa10.98□□□□□ -0.65
VMP1-208ENST00000588617 GPATCH3Q96I76 525 aa10.98□□□□□ -0.65
VMP1-208ENST00000588617 ZCCHC2Q9C0B9 1178 aaKnown RBP10.98□□□□□ -0.65
VMP1-208ENST00000588617 LIN7BQ9HAP6 207 aa10.98□□□□□ -0.65
VMP1-208ENST00000588617 TOR4AQ9NXH8 423 aa10.98□□□□□ -0.65
VMP1-208ENST00000588617 COL9A2Q14055 689 aaPredicted RBP10.97□□□□□ -0.65
VMP1-208ENST00000588617 C6orf118Q5T5N4 469 aa10.97□□□□□ -0.65
VMP1-208ENST00000588617 TPTE2Q6XPS3 522 aa10.97□□□□□ -0.65
VMP1-208ENST00000588617 KRT25Q7Z3Z0 450 aa10.97□□□□□ -0.65
VMP1-208ENST00000588617 ANKRD24Q8TF21 1146 aa10.97□□□□□ -0.65
VMP1-208ENST00000588617 GPAMQ9HCL2 828 aa10.97□□□□□ -0.65
VMP1-208ENST00000588617 ABCB6Q9NP58 842 aa10.97□□□□□ -0.65
VMP1-208ENST00000588617 R3HCC1Q9Y3T6 440 aaKnown RBP10.97□□□□□ -0.65
VMP1-208ENST00000588617 SUPT16HQ9Y5B9 1047 aaKnown RBP10.97□□□□□ -0.65
VMP1-208ENST00000588617 CAPN5O15484 640 aaPredicted RBP10.96□□□□□ -0.65
VMP1-208ENST00000588617 PHC3Q8NDX5 983 aa10.96□□□□□ -0.65
VMP1-208ENST00000588617 ANAPC16Q96DE5 110 aa10.96□□□□□ -0.65
VMP1-208ENST00000588617 RUBCNLQ9H714 662 aa10.96□□□□□ -0.65
VMP1-208ENST00000588617 TLR6Q9Y2C9 796 aa10.96□□□□□ -0.65
VMP1-208ENST00000588617 KLF4O43474 513 aa10.95□□□□□ -0.66
VMP1-208ENST00000588617 PF4P02776 101 aa10.95□□□□□ -0.66
VMP1-208ENST00000588617 IBSPP21815 317 aaPredicted RBP10.95□□□□□ -0.66
VMP1-208ENST00000588617 TARSP26639 723 aaKnown RBP10.95□□□□□ -0.66
VMP1-208ENST00000588617 LIG3P49916 1009 aa10.95□□□□□ -0.66
VMP1-208ENST00000588617 IGBP1P78318 339 aa10.95□□□□□ -0.66
VMP1-208ENST00000588617 RAB33AQ14088 237 aa10.95□□□□□ -0.66
VMP1-208ENST00000588617 SNAP47Q5SQN1 464 aa10.95□□□□□ -0.66
VMP1-208ENST00000588617 RNF187Q5TA31 235 aaPredicted RBP10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms