RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-223	ENST00000583595	DNAJB12	Q9NXW2	375 aa	Known RBP	7.34	□□□□□ -1.23
SS18-223	ENST00000583595	SLC6A14	Q9UN76	642 aa		7.34	□□□□□ -1.23
SS18-223	ENST00000583595	USP20	Q9Y2K6	914 aa		7.34	□□□□□ -1.23
SS18-223	ENST00000583595	PROC	P04070	461 aa		7.33	□□□□□ -1.24
SS18-223	ENST00000583595	TARS	P26639	723 aa	Known RBP	7.33	□□□□□ -1.24
SS18-223	ENST00000583595	COL9A3	Q14050	684 aa	Predicted RBP	7.33	□□□□□ -1.24
SS18-223	ENST00000583595	C16orf46	Q6P387	395 aa		7.33	□□□□□ -1.24
SS18-223	ENST00000583595	C20orf204	Q6ZNR8	217 aa		7.33	□□□□□ -1.24
SS18-223	ENST00000583595	TMC7	Q7Z402	723 aa		7.33	□□□□□ -1.24
SS18-223	ENST00000583595	SPATA32	Q96LK8	384 aa		7.33	□□□□□ -1.24
SS18-223	ENST00000583595	FAM161B	Q96MY7	647 aa		7.33	□□□□□ -1.24
SS18-223	ENST00000583595	PRDM6	Q9NQX0	595 aa		7.33	□□□□□ -1.24
SS18-223	ENST00000583595	RTCB	Q9Y3I0	505 aa	Known RBP	7.33	□□□□□ -1.24
SS18-223	ENST00000583595	SPDYE3	A6NKU9	549 aa		7.32	□□□□□ -1.24
SS18-223	ENST00000583595	SCAMP3	O14828	347 aa	Known RBP	7.32	□□□□□ -1.24
SS18-223	ENST00000583595	PPM1G	O15355	546 aa	Predicted RBP	7.32	□□□□□ -1.24
SS18-223	ENST00000583595	PTCD1	O75127	700 aa	Known RBP	7.32	□□□□□ -1.24
SS18-223	ENST00000583595	SASH3	O75995	380 aa		7.32	□□□□□ -1.24
SS18-223	ENST00000583595	CMTR1	Q8N1G2	835 aa	Known RBP	7.32	□□□□□ -1.24
SS18-223	ENST00000583595	COL26A1	Q96A83	441 aa		7.32	□□□□□ -1.24
SS18-223	ENST00000583595	C11orf16	Q9NQ32	467 aa		7.32	□□□□□ -1.24
SS18-223	ENST00000583595	ZFAT	Q9P243	1243 aa		7.32	□□□□□ -1.24
SS18-223	ENST00000583595	C1QTNF9B	B2RNN3	333 aa		7.31	□□□□□ -1.24
SS18-223	ENST00000583595	LILRB5	O75023	590 aa		7.31	□□□□□ -1.24
SS18-223	ENST00000583595	MAP3K6	O95382	1288 aa		7.31	□□□□□ -1.24
SS18-223	ENST00000583595	NID1	P14543	1247 aa		7.31	□□□□□ -1.24
SS18-223	ENST00000583595	BRD2	P25440	801 aa	Known RBP	7.31	□□□□□ -1.24
SS18-223	ENST00000583595	SF3A1	Q15459	793 aa	Known RBP	7.31	□□□□□ -1.24
SS18-223	ENST00000583595	CD163	Q86VB7	1156 aa		7.31	□□□□□ -1.24
SS18-223	ENST00000583595	ETFBKMT	Q8IXQ9	262 aa		7.31	□□□□□ -1.24
SS18-223	ENST00000583595	TMEM87A	Q8NBN3	555 aa		7.31	□□□□□ -1.24
SS18-223	ENST00000583595	NUDT8	Q8WV74	236 aa		7.31	□□□□□ -1.24
SS18-223	ENST00000583595	PIK3R5	Q8WYR1	880 aa		7.31	□□□□□ -1.24
SS18-223	ENST00000583595	RBCK1	Q9BYM8	510 aa		7.31	□□□□□ -1.24
SS18-223	ENST00000583595	XYLB	O75191	536 aa		7.3	□□□□□ -1.24
SS18-223	ENST00000583595	FAM13A	O94988	1023 aa		7.3	□□□□□ -1.24
SS18-223	ENST00000583595	SPATA31C1	P0DKV0	1188 aa		7.3	□□□□□ -1.24
SS18-223	ENST00000583595	RARA	P10276	462 aa		7.3	□□□□□ -1.24
SS18-223	ENST00000583595	NPR3	P17342	541 aa		7.3	□□□□□ -1.24
SS18-223	ENST00000583595	RAD51AP2	Q09MP3	1159 aa		7.3	□□□□□ -1.24
SS18-223	ENST00000583595	PRRT3	Q5FWE3	981 aa		7.3	□□□□□ -1.24
SS18-223	ENST00000583595	PSAPL1	Q6NUJ1	521 aa		7.3	□□□□□ -1.24
SS18-223	ENST00000583595	HELQ	Q8TDG4	1101 aa		7.3	□□□□□ -1.24
SS18-223	ENST00000583595	TMC1	Q8TDI8	760 aa		7.3	□□□□□ -1.24
SS18-223	ENST00000583595	BCL11A	Q9H165	835 aa		7.3	□□□□□ -1.24
SS18-223	ENST00000583595	JPH1	Q9HDC5	661 aa	Predicted RBP	7.3	□□□□□ -1.24
SS18-223	ENST00000583595	FAM229A	H3BQW9	127 aa		7.29	□□□□□ -1.24
SS18-223	ENST00000583595	TNFRSF10B	O14763	440 aa		7.29	□□□□□ -1.24
SS18-223	ENST00000583595	MPST	P25325	297 aa		7.29	□□□□□ -1.24
SS18-223	ENST00000583595	CHRNA4	P43681	627 aa		7.29	□□□□□ -1.24
SS18-223	ENST00000583595	PLCB3	Q01970	1234 aa		7.29	□□□□□ -1.24
SS18-223	ENST00000583595	PCSK7	Q16549	785 aa		7.29	□□□□□ -1.24
SS18-223	ENST00000583595	FAM26D	Q5JW98	314 aa		7.29	□□□□□ -1.24
SS18-223	ENST00000583595	TRAPPC3L	Q5T215	181 aa		7.29	□□□□□ -1.24
SS18-223	ENST00000583595	GIMAP6	Q6P9H5	292 aa		7.29	□□□□□ -1.24
SS18-223	ENST00000583595	DHX32	Q7L7V1	743 aa	Known RBP	7.29	□□□□□ -1.24
SS18-223	ENST00000583595	FAM35A	Q86V20	835 aa		7.29	□□□□□ -1.24
SS18-223	ENST00000583595	CCDC87	Q9NVE4	849 aa		7.29	□□□□□ -1.24
SS18-223	ENST00000583595	PARP2	Q9UGN5	583 aa		7.29	□□□□□ -1.24
SS18-223	ENST00000583595	NAGPA	Q9UK23	515 aa		7.29	□□□□□ -1.24
SS18-223	ENST00000583595	WWC3	Q9ULE0	1092 aa		7.29	□□□□□ -1.24
SS18-223	ENST00000583595	TREH	O43280	583 aa		7.28	□□□□□ -1.24
SS18-223	ENST00000583595	RGS9	O75916	674 aa	Predicted RBP	7.28	□□□□□ -1.24
SS18-223	ENST00000583595	EGFR	P00533	1210 aa		7.28	□□□□□ -1.24
SS18-223	ENST00000583595	CPB1	P15086	417 aa		7.28	□□□□□ -1.24
SS18-223	ENST00000583595	XPC	Q01831	940 aa	Predicted RBP	7.28	□□□□□ -1.24
SS18-223	ENST00000583595	MLLT1	Q03111	559 aa	Predicted RBP	7.28	□□□□□ -1.24
SS18-223	ENST00000583595	TRIM28	Q13263	835 aa	Known RBP	7.28	□□□□□ -1.24
SS18-223	ENST00000583595	DPH6	Q7L8W6	267 aa		7.28	□□□□□ -1.24
SS18-223	ENST00000583595	METTL16	Q86W50	562 aa	Known RBP	7.28	□□□□□ -1.24
SS18-223	ENST00000583595	KCNMB2	Q9Y691	235 aa		7.28	□□□□□ -1.24
SS18-223	ENST00000583595	ZBTB42	B2RXF5	422 aa		7.27	□□□□□ -1.25
SS18-223	ENST00000583595	LDHB	P07195	334 aa	Known RBP	7.27	□□□□□ -1.25
SS18-223	ENST00000583595	CANX	P27824	592 aa	Known RBP	7.27	□□□□□ -1.25
SS18-223	ENST00000583595	MAPK8	P45983	427 aa		7.27	□□□□□ -1.25
SS18-223	ENST00000583595	BAG6	P46379	1132 aa		7.27	□□□□□ -1.25
SS18-223	ENST00000583595	AFF1	P51825	1210 aa	Known RBP	7.27	□□□□□ -1.25
SS18-223	ENST00000583595	DSC3	Q14574	896 aa		7.27	□□□□□ -1.25
SS18-223	ENST00000583595	NT5DC4	Q86YG4	428 aa		7.27	□□□□□ -1.25
SS18-223	ENST00000583595	TRPM4	Q8TD43	1214 aa		7.27	□□□□□ -1.25
SS18-223	ENST00000583595	DUSP9	Q99956	384 aa	Known RBP	7.27	□□□□□ -1.25
SS18-223	ENST00000583595	BRPF3	Q9ULD4	1205 aa		7.27	□□□□□ -1.25
SS18-223	ENST00000583595	GPLD1	P80108	840 aa		7.26	□□□□□ -1.25
SS18-223	ENST00000583595	FMR1	Q06787	632 aa	Known RBP eCLIP	7.26	□□□□□ -1.25
SS18-223	ENST00000583595	AAMP	Q13685	434 aa		7.26	□□□□□ -1.25
SS18-223	ENST00000583595	SETDB2	Q96T68	719 aa		7.26	□□□□□ -1.25
SS18-223	ENST00000583595	TANGO6	Q9C0B7	1094 aa		7.26	□□□□□ -1.25
SS18-223	ENST00000583595	TLR7	Q9NYK1	1049 aa	Known RBP	7.26	□□□□□ -1.25
SS18-223	ENST00000583595	STIM2	Q9P246	746 aa		7.26	□□□□□ -1.25
SS18-223	ENST00000583595	NDUFB5	O43674	189 aa		7.25	□□□□□ -1.25
SS18-223	ENST00000583595	APBA3	O96018	575 aa		7.25	□□□□□ -1.25
SS18-223	ENST00000583595	EHHADH	Q08426	723 aa		7.25	□□□□□ -1.25
SS18-223	ENST00000583595	PERM1	Q5SV97	790 aa		7.25	□□□□□ -1.25
SS18-223	ENST00000583595	ELMSAN1	Q6PJG2	1045 aa		7.25	□□□□□ -1.25
SS18-223	ENST00000583595	HFE2	Q6ZVN8	426 aa		7.25	□□□□□ -1.25
SS18-223	ENST00000583595	DNAJC2	Q99543	621 aa	Known RBP	7.25	□□□□□ -1.25
SS18-223	ENST00000583595		A0A0A0MRY4	1105 aa		7.24	□□□□□ -1.25
SS18-223	ENST00000583595	ZBTB39	O15060	712 aa		7.24	□□□□□ -1.25
SS18-223	ENST00000583595	FZD6	O60353	706 aa		7.24	□□□□□ -1.25
SS18-223	ENST00000583595	MMP20	O60882	483 aa		7.24	□□□□□ -1.25

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