RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 KSR1Q8IVT5 923 aa7.83□□□□□ -1.16
SMCHD1-209ENST00000583441 OSBPL1AQ9BXW6 950 aa7.83□□□□□ -1.16
SMCHD1-209ENST00000583441 C11orf16Q9NQ32 467 aa7.83□□□□□ -1.16
SMCHD1-209ENST00000583441 TLR7Q9NYK1 1049 aaKnown RBP7.83□□□□□ -1.16
SMCHD1-209ENST00000583441 NCANO14594 1321 aa7.82□□□□□ -1.16
SMCHD1-209ENST00000583441 LINC01387J3KSC0 135 aa7.82□□□□□ -1.16
SMCHD1-209ENST00000583441 DUOXA2Q1HG44 320 aa7.82□□□□□ -1.16
SMCHD1-209ENST00000583441 CCDC102BQ68D86 513 aa7.82□□□□□ -1.16
SMCHD1-209ENST00000583441 LILRA6Q6PI73 481 aa7.82□□□□□ -1.16
SMCHD1-209ENST00000583441 KIAA1211Q6ZU35 1233 aa7.82□□□□□ -1.16
SMCHD1-209ENST00000583441 TRIM50Q86XT4 487 aa7.82□□□□□ -1.16
SMCHD1-209ENST00000583441 PAPLNO95428 1278 aa7.81□□□□□ -1.16
SMCHD1-209ENST00000583441 INPP5BP32019 993 aa7.81□□□□□ -1.16
SMCHD1-209ENST00000583441 IDH3AP50213 366 aa7.81□□□□□ -1.16
SMCHD1-209ENST00000583441 NFXL1Q6ZNB6 911 aa7.81□□□□□ -1.16
SMCHD1-209ENST00000583441 PPP1R3FQ6ZSY5 799 aaPredicted RBP7.81□□□□□ -1.16
SMCHD1-209ENST00000583441 FLCNQ8NFG4 579 aa7.81□□□□□ -1.16
SMCHD1-209ENST00000583441 KCNK4Q9NYG8 393 aa7.81□□□□□ -1.16
SMCHD1-209ENST00000583441 TRIM33Q9UPN9 1127 aa7.81□□□□□ -1.16
SMCHD1-209ENST00000583441 BIN1O00499 593 aa7.8□□□□□ -1.16
SMCHD1-209ENST00000583441 PSAPP07602 524 aa7.8□□□□□ -1.16
SMCHD1-209ENST00000583441 RTN1Q16799 776 aa7.8□□□□□ -1.16
SMCHD1-209ENST00000583441 STAG2Q8N3U4 1231 aa7.8□□□□□ -1.16
SMCHD1-209ENST00000583441 FBXL6Q8N531 539 aa7.8□□□□□ -1.16
SMCHD1-209ENST00000583441 C2orf49Q9BVC5 232 aaPredicted RBP7.8□□□□□ -1.16
SMCHD1-209ENST00000583441 BCS1LQ9Y276 419 aa7.8□□□□□ -1.16
SMCHD1-209ENST00000583441 HIF3AQ9Y2N7 669 aa7.8□□□□□ -1.16
SMCHD1-209ENST00000583441 B8ZZF3 427 aa7.79□□□□□ -1.16
SMCHD1-209ENST00000583441 ARSDP51689 593 aa7.79□□□□□ -1.16
SMCHD1-209ENST00000583441 CPSF6Q16630 551 aaKnown RBP eCLIP7.79□□□□□ -1.16
SMCHD1-209ENST00000583441 IL27Q8NEV9 243 aa7.79□□□□□ -1.16
SMCHD1-209ENST00000583441 CHMP7Q8WUX9 453 aaPredicted RBP7.79□□□□□ -1.16
SMCHD1-209ENST00000583441 SLC38A3Q99624 504 aa7.79□□□□□ -1.16
SMCHD1-209ENST00000583441 BSDC1Q9NW68 430 aaPredicted RBP7.79□□□□□ -1.16
SMCHD1-209ENST00000583441 ATAD2Q6PL18 1390 aa7.79□□□□□ -1.16
SMCHD1-209ENST00000583441 M0R2N6 131 aa7.78□□□□□ -1.16
SMCHD1-209ENST00000583441 ZBTB7BO15156 539 aaPredicted RBP7.78□□□□□ -1.16
SMCHD1-209ENST00000583441 ATP1A2P50993 1020 aa7.78□□□□□ -1.16
SMCHD1-209ENST00000583441 NEUROD2Q15784 382 aa7.78□□□□□ -1.16
SMCHD1-209ENST00000583441 DEPDC4Q8N2C3 294 aa7.78□□□□□ -1.16
SMCHD1-209ENST00000583441 NSUN5Q96P11 429 aaKnown RBP7.78□□□□□ -1.16
SMCHD1-209ENST00000583441 C21orf2O43822 256 aa7.77□□□□□ -1.17
SMCHD1-209ENST00000583441 F13BP05160 661 aa7.77□□□□□ -1.17
SMCHD1-209ENST00000583441 ABL2P42684 1182 aa7.77□□□□□ -1.17
SMCHD1-209ENST00000583441 ANKRD34AQ69YU3 496 aa7.77□□□□□ -1.17
SMCHD1-209ENST00000583441 TXNDC11Q6PKC3 985 aa7.77□□□□□ -1.17
SMCHD1-209ENST00000583441 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.77□□□□□ -1.17
SMCHD1-209ENST00000583441 PREPP48147 710 aa7.76□□□□□ -1.17
SMCHD1-209ENST00000583441 TSEN2Q8NCE0 465 aaKnown RBP7.76□□□□□ -1.17
SMCHD1-209ENST00000583441 NFATC2IPQ8NCF5 419 aa7.76□□□□□ -1.17
SMCHD1-209ENST00000583441 KIAA1024Q9UPX6 916 aa7.76□□□□□ -1.17
SMCHD1-209ENST00000583441 CYP26A1O43174 497 aa7.75□□□□□ -1.17
SMCHD1-209ENST00000583441 KLHL23Q8NBE8 558 aa7.75□□□□□ -1.17
SMCHD1-209ENST00000583441 GAS2L2Q8NHY3 880 aa7.75□□□□□ -1.17
SMCHD1-209ENST00000583441 SCG3Q8WXD2 468 aaKnown RBP7.75□□□□□ -1.17
SMCHD1-209ENST00000583441 COL26A1Q96A83 441 aa7.75□□□□□ -1.17
SMCHD1-209ENST00000583441 CARD10Q9BWT7 1032 aa7.75□□□□□ -1.17
SMCHD1-209ENST00000583441 PAK6Q9NQU5 681 aaPredicted RBP7.75□□□□□ -1.17
SMCHD1-209ENST00000583441 GAS2O43903 313 aaKnown RBP7.74□□□□□ -1.17
SMCHD1-209ENST00000583441 MAP4P27816 1152 aaKnown RBP7.74□□□□□ -1.17
SMCHD1-209ENST00000583441 RXRBP28702 533 aa7.74□□□□□ -1.17
SMCHD1-209ENST00000583441 CDC25BP30305 580 aa7.74□□□□□ -1.17
SMCHD1-209ENST00000583441 FAM117BQ6P1L5 589 aa7.74□□□□□ -1.17
SMCHD1-209ENST00000583441 ERICH6Q7L0X2 663 aa7.74□□□□□ -1.17
SMCHD1-209ENST00000583441 METTL22Q9BUU2 404 aaPredicted RBP7.74□□□□□ -1.17
SMCHD1-209ENST00000583441 CARMIL2Q6F5E8 1435 aa7.74□□□□□ -1.17
SMCHD1-209ENST00000583441 USP17L5A8MUK1 530 aa7.73□□□□□ -1.17
SMCHD1-209ENST00000583441 FDX2Q6P4F2 183 aa7.73□□□□□ -1.17
SMCHD1-209ENST00000583441 UBASH3BQ8TF42 649 aa7.73□□□□□ -1.17
SMCHD1-209ENST00000583441 GDPD2Q9HCC8 539 aa7.73□□□□□ -1.17
SMCHD1-209ENST00000583441 RBM19Q9Y4C8 960 aaKnown RBP7.73□□□□□ -1.17
SMCHD1-209ENST00000583441 FSCN2O14926 492 aa7.72□□□□□ -1.17
SMCHD1-209ENST00000583441 DDX3YO15523 660 aaKnown RBP7.72□□□□□ -1.17
SMCHD1-209ENST00000583441 CDC27P30260 824 aa7.72□□□□□ -1.17
SMCHD1-209ENST00000583441 BUD31P41223 144 aaPredicted RBP7.72□□□□□ -1.17
SMCHD1-209ENST00000583441 KRTAP9-3Q9BYQ3 159 aa7.72□□□□□ -1.17
SMCHD1-209ENST00000583441 LACRTQ9GZZ8 138 aa7.72□□□□□ -1.17
SMCHD1-209ENST00000583441 KLK14Q9P0G3 267 aa7.72□□□□□ -1.17
SMCHD1-209ENST00000583441 MMP20O60882 483 aa7.71□□□□□ -1.18
SMCHD1-209ENST00000583441 XYLBO75191 536 aa7.71□□□□□ -1.18
SMCHD1-209ENST00000583441 SOX18P35713 384 aa7.71□□□□□ -1.18
SMCHD1-209ENST00000583441 CLDN10P78369 228 aa7.71□□□□□ -1.18
SMCHD1-209ENST00000583441 FOXD4L4Q8WXT5 416 aaPredicted RBP7.71□□□□□ -1.18
SMCHD1-209ENST00000583441 RNF208Q9H0X6 261 aa7.71□□□□□ -1.18
SMCHD1-209ENST00000583441 MICAL2O94851 1124 aa7.7□□□□□ -1.18
SMCHD1-209ENST00000583441 EGFRP00533 1210 aa7.7□□□□□ -1.18
SMCHD1-209ENST00000583441 RASA1P20936 1047 aa7.7□□□□□ -1.18
SMCHD1-209ENST00000583441 RTCBQ9Y3I0 505 aaKnown RBP7.7□□□□□ -1.18
SMCHD1-209ENST00000583441 GTF3C3Q9Y5Q9 886 aa7.7□□□□□ -1.18
SMCHD1-209ENST00000583441 PALM3A6NDB9 673 aaPredicted RBP7.69□□□□□ -1.18
SMCHD1-209ENST00000583441 TM4SF5O14894 197 aa7.69□□□□□ -1.18
SMCHD1-209ENST00000583441 HOXD8P13378 290 aaPredicted RBP7.69□□□□□ -1.18
SMCHD1-209ENST00000583441 SGO2Q562F6 1265 aa7.69□□□□□ -1.18
SMCHD1-209ENST00000583441 LARGE2Q8N3Y3 721 aa7.69□□□□□ -1.18
SMCHD1-209ENST00000583441 TOX2Q96NM4 488 aa7.69□□□□□ -1.18
SMCHD1-209ENST00000583441 KRTAP9-8Q9BYQ0 159 aa7.69□□□□□ -1.18
SMCHD1-209ENST00000583441 ADAM11O75078 769 aa7.68□□□□□ -1.18
SMCHD1-209ENST00000583441 PLCL1Q15111 1095 aa7.68□□□□□ -1.18
SMCHD1-209ENST00000583441 NFKBIBQ15653 356 aa7.68□□□□□ -1.18
SMCHD1-209ENST00000583441 CEP135Q66GS9 1140 aa7.68□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms