RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 VGLL2Q8N8G2 317 aa18.73■□□□□ 0.59
SS18-215ENST00000580642 EAF2Q96CJ1 260 aaPredicted RBP18.73■□□□□ 0.59
SS18-215ENST00000580642 ANKRD2Q9GZV1 360 aa18.73■□□□□ 0.59
SS18-215ENST00000580642 ALDH1B1P30837 517 aa18.72■□□□□ 0.59
SS18-215ENST00000580642 ECHDC1Q9NTX5 307 aa18.72■□□□□ 0.59
SS18-215ENST00000580642 EIF5BO60841 1220 aaKnown RBP18.71■□□□□ 0.59
SS18-215ENST00000580642 GLRX3O76003 335 aaKnown RBP18.71■□□□□ 0.59
SS18-215ENST00000580642 SRGNP10124 158 aa18.71■□□□□ 0.59
SS18-215ENST00000580642 POLD1P28340 1107 aa18.71■□□□□ 0.59
SS18-215ENST00000580642 PUM3Q15397 648 aaKnown RBP18.71■□□□□ 0.59
SS18-215ENST00000580642 MASTLQ96GX5 879 aa18.71■□□□□ 0.59
SS18-215ENST00000580642 TTC22Q5TAA0 569 aa18.7■□□□□ 0.58
SS18-215ENST00000580642 STYK1Q6J9G0 422 aa18.7■□□□□ 0.58
SS18-215ENST00000580642 TICAM2Q86XR7 235 aa18.7■□□□□ 0.58
SS18-215ENST00000580642 LPIN2Q92539 896 aa18.7■□□□□ 0.58
SS18-215ENST00000580642 CELF1Q92879 486 aaKnown RBP18.7■□□□□ 0.58
SS18-215ENST00000580642 CASZ1Q86V15 1759 aa18.7■□□□□ 0.58
SS18-215ENST00000580642 TNRC6CQ9HCJ0 1690 aaKnown RBP18.69■□□□□ 0.58
SS18-215ENST00000580642 ZNF609O15014 1411 aa18.69■□□□□ 0.58
SS18-215ENST00000580642 A0A1B0GUL7 405 aa18.69■□□□□ 0.58
SS18-215ENST00000580642 ZBTB22O15209 634 aa18.69■□□□□ 0.58
SS18-215ENST00000580642 FGFR2P21802 821 aa18.69■□□□□ 0.58
SS18-215ENST00000580642 UBE4AQ14139 1066 aa18.69■□□□□ 0.58
SS18-215ENST00000580642 R3HDM1Q15032 1099 aaKnown RBP18.69■□□□□ 0.58
SS18-215ENST00000580642 ATP2B3Q16720 1220 aa18.69■□□□□ 0.58
SS18-215ENST00000580642 SKAP1Q86WV1 359 aa18.69■□□□□ 0.58
SS18-215ENST00000580642 CCDC24Q8N4L8 307 aa18.69■□□□□ 0.58
SS18-215ENST00000580642 OTUD7AQ8TE49 926 aaPredicted RBP18.69■□□□□ 0.58
SS18-215ENST00000580642 PPIL4Q8WUA2 492 aaKnown RBP eCLIP18.69■□□□□ 0.58
SS18-215ENST00000580642 MINPP1Q9UNW1 487 aa18.69■□□□□ 0.58
SS18-215ENST00000580642 C10orf71Q711Q0 1435 aa18.68■□□□□ 0.58
SS18-215ENST00000580642 H0YIN7 160 aa18.68■□□□□ 0.58
SS18-215ENST00000580642 ATP5JP18859 108 aa18.68■□□□□ 0.58
SS18-215ENST00000580642 CHRNDQ07001 517 aa18.68■□□□□ 0.58
SS18-215ENST00000580642 ZNF512BQ96KM6 892 aaPredicted RBP18.68■□□□□ 0.58
SS18-215ENST00000580642 PDGFDQ9GZP0 370 aaPredicted RBP18.68■□□□□ 0.58
SS18-215ENST00000580642 DBNLQ9UJU6 430 aaKnown RBP18.68■□□□□ 0.58
SS18-215ENST00000580642 SLC5A1P13866 664 aa18.67■□□□□ 0.58
SS18-215ENST00000580642 PI4K2BQ8TCG2 481 aa18.67■□□□□ 0.58
SS18-215ENST00000580642 IFIT1P09914 478 aaKnown RBP18.66■□□□□ 0.58
SS18-215ENST00000580642 CCDC158Q5M9N0 1113 aa18.66■□□□□ 0.58
SS18-215ENST00000580642 ILDR2Q71H61 639 aa18.66■□□□□ 0.58
SS18-215ENST00000580642 CNKSR1Q969H4 720 aa18.66■□□□□ 0.58
SS18-215ENST00000580642 CCDC8Q9H0W5 538 aaPredicted RBP18.66■□□□□ 0.58
SS18-215ENST00000580642 LEMD3Q9Y2U8 911 aa18.66■□□□□ 0.58
SS18-215ENST00000580642 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP18.66■□□□□ 0.58
SS18-215ENST00000580642 TGFB2P61812 414 aa18.65■□□□□ 0.58
SS18-215ENST00000580642 TIMM10P62072 90 aa18.65■□□□□ 0.58
SS18-215ENST00000580642 GRIPAP1Q4V328 841 aa18.65■□□□□ 0.58
SS18-215ENST00000580642 C2CD5Q86YS7 1000 aa18.65■□□□□ 0.58
SS18-215ENST00000580642 SP8Q8IXZ3 490 aa18.65■□□□□ 0.58
SS18-215ENST00000580642 XAGE2Q96GT9 111 aa18.65■□□□□ 0.58
SS18-215ENST00000580642 NEUROD6Q96NK8 337 aa18.65■□□□□ 0.58
SS18-215ENST00000580642 TMX4Q9H1E5 349 aaPredicted RBP18.65■□□□□ 0.58
SS18-215ENST00000580642 DBNDD2Q9BQY9 259 aa18.64■□□□□ 0.57
SS18-215ENST00000580642 PODXL2Q9NZ53 605 aa18.64■□□□□ 0.57
SS18-215ENST00000580642 XDHP47989 1333 aa18.64■□□□□ 0.57
SS18-215ENST00000580642 ANKRD31Q8N7Z5 1873 aa18.64■□□□□ 0.57
SS18-215ENST00000580642 ZBTB7AO95365 584 aa18.63■□□□□ 0.57
SS18-215ENST00000580642 UQCRFS1P1P0C7P4 283 aa18.63■□□□□ 0.57
SS18-215ENST00000580642 GSPT1P15170 499 aaKnown RBP18.63■□□□□ 0.57
SS18-215ENST00000580642 GORABQ5T7V8 394 aa18.63■□□□□ 0.57
SS18-215ENST00000580642 CC2D2BQ6DHV5 1058 aa18.63■□□□□ 0.57
SS18-215ENST00000580642 C15orf52Q6ZUT6 534 aaKnown RBP18.63■□□□□ 0.57
SS18-215ENST00000580642 SGIP1Q9BQI5 828 aa18.63■□□□□ 0.57
SS18-215ENST00000580642 ATP6V0A2Q9Y487 856 aa18.63■□□□□ 0.57
SS18-215ENST00000580642 PPEF1O14829 653 aaPredicted RBP18.62■□□□□ 0.57
SS18-215ENST00000580642 CNTROBQ8N137 903 aa18.62■□□□□ 0.57
SS18-215ENST00000580642 TLR7Q9NYK1 1049 aaKnown RBP18.62■□□□□ 0.57
SS18-215ENST00000580642 CD2APQ9Y5K6 639 aa18.62■□□□□ 0.57
SS18-215ENST00000580642 SDSP20132 328 aa18.61■□□□□ 0.57
SS18-215ENST00000580642 ATP2B4P23634 1241 aa18.61■□□□□ 0.57
SS18-215ENST00000580642 CASC1Q6TDU7 716 aa18.61■□□□□ 0.57
SS18-215ENST00000580642 EVI5LQ96CN4 794 aa18.61■□□□□ 0.57
SS18-215ENST00000580642 HAUS7Q99871 368 aa18.61■□□□□ 0.57
SS18-215ENST00000580642 BCL11AQ9H165 835 aa18.61■□□□□ 0.57
SS18-215ENST00000580642 ZNF804BA4D1E1 1349 aa18.6■□□□□ 0.57
SS18-215ENST00000580642 CDC45O75419 566 aa18.6■□□□□ 0.57
SS18-215ENST00000580642 KCNJ4P48050 445 aa18.6■□□□□ 0.57
SS18-215ENST00000580642 CAVIN4Q5BKX8 364 aa18.6■□□□□ 0.57
SS18-215ENST00000580642 TTC39AQ5SRH9 613 aa18.6■□□□□ 0.57
SS18-215ENST00000580642 HELBQ8NG08 1087 aaPredicted RBP18.6■□□□□ 0.57
SS18-215ENST00000580642 BACH2Q9BYV9 841 aa18.6■□□□□ 0.57
SS18-215ENST00000580642 RFX7Q2KHR2 1363 aa18.59■□□□□ 0.57
SS18-215ENST00000580642 SEMA3EO15041 775 aa18.59■□□□□ 0.57
SS18-215ENST00000580642 IGSF3O75054 1194 aa18.59■□□□□ 0.57
SS18-215ENST00000580642 TAF5LO75529 589 aa18.59■□□□□ 0.57
SS18-215ENST00000580642 ARID4AP29374 1257 aaPredicted RBP18.59■□□□□ 0.57
SS18-215ENST00000580642 ZNF622Q969S3 477 aaKnown RBP eCLIP18.59■□□□□ 0.57
SS18-215ENST00000580642 GNL3LQ9NVN8 582 aaKnown RBP18.59■□□□□ 0.57
SS18-215ENST00000580642 ANKIB1Q9P2G1 1089 aa18.59■□□□□ 0.57
SS18-215ENST00000580642 ATF5Q9Y2D1 282 aaPredicted RBP18.59■□□□□ 0.57
SS18-215ENST00000580642 KIF13BQ9NQT8 1826 aa18.58■□□□□ 0.57
SS18-215ENST00000580642 COL4A1P02462 1669 aa18.58■□□□□ 0.57
SS18-215ENST00000580642 HIP1O00291 1037 aa18.58■□□□□ 0.56
SS18-215ENST00000580642 PTGER2P43116 358 aa18.58■□□□□ 0.56
SS18-215ENST00000580642 C8orf34Q49A92 452 aa18.58■□□□□ 0.56
SS18-215ENST00000580642 CCDC102BQ68D86 513 aa18.58■□□□□ 0.56
SS18-215ENST00000580642 SPON1Q9HCB6 807 aa18.58■□□□□ 0.56
SS18-215ENST00000580642 ARAP2Q8WZ64 1704 aa18.57■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms