RNA–Protein interactions for RNA: ENST00000580419.5

SMARCE1-216, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 1,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-216ENST00000580419 BCL2L13Q9BXK5 485 aa18.56■□□□□ 0.56
SMARCE1-216ENST00000580419 ZC3H12CQ9C0D7 883 aaKnown RBP18.56■□□□□ 0.56
SMARCE1-216ENST00000580419 BSDC1Q9NW68 430 aaPredicted RBP18.56■□□□□ 0.56
SMARCE1-216ENST00000580419 MKRN1Q9UHC7 482 aaKnown RBP18.56■□□□□ 0.56
SMARCE1-216ENST00000580419 CNOT7Q9UIV1 285 aaKnown RBP18.56■□□□□ 0.56
SMARCE1-216ENST00000580419 THSD7BQ9C0I4 1608 aa18.56■□□□□ 0.56
SMARCE1-216ENST00000580419 RAD17O75943 681 aa18.55■□□□□ 0.56
SMARCE1-216ENST00000580419 VIL1P09327 827 aaKnown RBP18.55■□□□□ 0.56
SMARCE1-216ENST00000580419 MYH16Q9H6N6 1097 aa18.55■□□□□ 0.56
SMARCE1-216ENST00000580419 SEC31BQ9NQW1 1179 aa18.55■□□□□ 0.56
SMARCE1-216ENST00000580419 GGA1Q9UJY5 639 aa18.55■□□□□ 0.56
SMARCE1-216ENST00000580419 SCN9AQ15858 1988 aa18.55■□□□□ 0.56
SMARCE1-216ENST00000580419 VEGFBP49765 207 aa18.54■□□□□ 0.56
SMARCE1-216ENST00000580419 MMP14P50281 582 aa18.54■□□□□ 0.56
SMARCE1-216ENST00000580419 CDC37L1Q7L3B6 337 aa18.54■□□□□ 0.56
SMARCE1-216ENST00000580419 PSMD14O00487 310 aa18.53■□□□□ 0.56
SMARCE1-216ENST00000580419 ECE2O60344 883 aa18.53■□□□□ 0.56
SMARCE1-216ENST00000580419 ATP2B4P23634 1241 aa18.53■□□□□ 0.56
SMARCE1-216ENST00000580419 ECE1P42892 770 aa18.53■□□□□ 0.56
SMARCE1-216ENST00000580419 GCKRQ14397 625 aa18.53■□□□□ 0.56
SMARCE1-216ENST00000580419 PODNQ7Z5L7 613 aa18.53■□□□□ 0.56
SMARCE1-216ENST00000580419 DNAAF4Q8WXU2 420 aa18.53■□□□□ 0.56
SMARCE1-216ENST00000580419 PRDM10Q9NQV6 1147 aa18.53■□□□□ 0.56
SMARCE1-216ENST00000580419 WBP1LQ9NX94 342 aa18.53■□□□□ 0.56
SMARCE1-216ENST00000580419 ANKIB1Q9P2G1 1089 aa18.53■□□□□ 0.56
SMARCE1-216ENST00000580419 POLR2AP24928 1970 aaKnown RBP18.53■□□□□ 0.56
SMARCE1-216ENST00000580419 CSF1RP07333 972 aa18.52■□□□□ 0.56
SMARCE1-216ENST00000580419 HIRAP54198 1017 aaPredicted RBP18.52■□□□□ 0.56
SMARCE1-216ENST00000580419 CASP7P55210 303 aa18.52■□□□□ 0.56
SMARCE1-216ENST00000580419 MAP2K1Q02750 393 aaPredicted RBP18.52■□□□□ 0.56
SMARCE1-216ENST00000580419 CST9Q5W186 159 aa18.52■□□□□ 0.56
SMARCE1-216ENST00000580419 G2E3Q7L622 706 aa18.52■□□□□ 0.56
SMARCE1-216ENST00000580419 AGBL3Q8NEM8 1001 aa18.52■□□□□ 0.56
SMARCE1-216ENST00000580419 TLL2Q9Y6L7 1015 aa18.52■□□□□ 0.56
SMARCE1-216ENST00000580419 UFL1O94874 794 aa18.51■□□□□ 0.55
SMARCE1-216ENST00000580419 COL13A1Q5TAT6 717 aaPredicted RBP18.51■□□□□ 0.55
SMARCE1-216ENST00000580419 MICALL2Q8IY33 904 aa18.51■□□□□ 0.55
SMARCE1-216ENST00000580419 DBNDD1Q9H9R9 158 aa18.51■□□□□ 0.55
SMARCE1-216ENST00000580419 MED23Q9ULK4 1368 aa18.51■□□□□ 0.55
SMARCE1-216ENST00000580419 ZNF521Q96K83 1311 aa18.5■□□□□ 0.55
SMARCE1-216ENST00000580419 FKBP5Q13451 457 aaPredicted RBP18.5■□□□□ 0.55
SMARCE1-216ENST00000580419 CWF19L2Q2TBE0 894 aaKnown RBP18.5■□□□□ 0.55
SMARCE1-216ENST00000580419 MINPP1Q9UNW1 487 aa18.5■□□□□ 0.55
SMARCE1-216ENST00000580419 WDR33Q9C0J8 1336 aaKnown RBP18.49■□□□□ 0.55
SMARCE1-216ENST00000580419 MAP2K2P36507 400 aa18.49■□□□□ 0.55
SMARCE1-216ENST00000580419 ZNF280AP59817 542 aaPredicted RBP18.49■□□□□ 0.55
SMARCE1-216ENST00000580419 EXOSC9Q06265 439 aaKnown RBP18.49■□□□□ 0.55
SMARCE1-216ENST00000580419 UBE3BQ7Z3V4 1068 aa18.49■□□□□ 0.55
SMARCE1-216ENST00000580419 SAPCD2Q86UD0 394 aa18.49■□□□□ 0.55
SMARCE1-216ENST00000580419 TRPM4Q8TD43 1214 aa18.49■□□□□ 0.55
SMARCE1-216ENST00000580419 ZNF428Q96B54 188 aa18.49■□□□□ 0.55
SMARCE1-216ENST00000580419 GREM2Q9H772 168 aa18.49■□□□□ 0.55
SMARCE1-216ENST00000580419 ABT1Q9ULW3 272 aaKnown RBP18.49■□□□□ 0.55
SMARCE1-216ENST00000580419 LEMD3Q9Y2U8 911 aa18.49■□□□□ 0.55
SMARCE1-216ENST00000580419 RIMBP2O15034 1052 aa18.48■□□□□ 0.55
SMARCE1-216ENST00000580419 CTCFP49711 727 aaPredicted RBP18.48■□□□□ 0.55
SMARCE1-216ENST00000580419 GMLQ99445 158 aa18.48■□□□□ 0.55
SMARCE1-216ENST00000580419 ANKRD2Q9GZV1 360 aa18.48■□□□□ 0.55
SMARCE1-216ENST00000580419 TRAF5O00463 557 aa18.47■□□□□ 0.55
SMARCE1-216ENST00000580419 RSBN1LQ6PCB5 846 aaPredicted RBP18.47■□□□□ 0.55
SMARCE1-216ENST00000580419 AIDAQ96BJ3 306 aa18.47■□□□□ 0.55
SMARCE1-216ENST00000580419 ZBTB12Q9Y330 459 aaPredicted RBP18.47■□□□□ 0.55
SMARCE1-216ENST00000580419 G3V3G9 751 aa18.46■□□□□ 0.55
SMARCE1-216ENST00000580419 IGHMBP2P38935 993 aaKnown RBP18.46■□□□□ 0.55
SMARCE1-216ENST00000580419 CCT4P50991 539 aaKnown RBP18.46■□□□□ 0.55
SMARCE1-216ENST00000580419 DOK7Q18PE1 504 aa18.46■□□□□ 0.55
SMARCE1-216ENST00000580419 BEND3Q5T5X7 828 aa18.46■□□□□ 0.55
SMARCE1-216ENST00000580419 DCAF8Q5TAQ9 597 aa18.46■□□□□ 0.55
SMARCE1-216ENST00000580419 CAPNS2Q96L46 248 aa18.46■□□□□ 0.55
SMARCE1-216ENST00000580419 MYO3BQ8WXR4 1341 aa18.46■□□□□ 0.55
SMARCE1-216ENST00000580419 USP17L3A6NCW0 530 aa18.45■□□□□ 0.54
SMARCE1-216ENST00000580419 USP17L4A6NCW7 530 aa18.45■□□□□ 0.54
SMARCE1-216ENST00000580419 FOXN1O15353 648 aa18.45■□□□□ 0.54
SMARCE1-216ENST00000580419 CELF2O95319 508 aaKnown RBP18.45■□□□□ 0.54
SMARCE1-216ENST00000580419 C15orf52Q6ZUT6 534 aaKnown RBP18.45■□□□□ 0.54
SMARCE1-216ENST00000580419 USP17L1Q7RTZ2 530 aa18.45■□□□□ 0.54
SMARCE1-216ENST00000580419 JARID2Q92833 1246 aaPredicted RBP18.45■□□□□ 0.54
SMARCE1-216ENST00000580419 GLIS2Q9BZE0 524 aaPredicted RBP18.45■□□□□ 0.54
SMARCE1-216ENST00000580419 COA1Q9GZY4 146 aa18.45■□□□□ 0.54
SMARCE1-216ENST00000580419 KCNQ5Q9NR82 932 aa18.45■□□□□ 0.54
SMARCE1-216ENST00000580419 PITPNM2Q9BZ72 1349 aa18.45■□□□□ 0.54
SMARCE1-216ENST00000580419 ZNF646O15015 1829 aaPredicted RBP18.44■□□□□ 0.54
SMARCE1-216ENST00000580419 SPEF2Q9C093 1822 aa18.44■□□□□ 0.54
SMARCE1-216ENST00000580419 CA12O43570 354 aa18.44■□□□□ 0.54
SMARCE1-216ENST00000580419 ALDH1L1O75891 902 aa18.44■□□□□ 0.54
SMARCE1-216ENST00000580419 ITGA6P23229 1130 aa18.44■□□□□ 0.54
SMARCE1-216ENST00000580419 TNS4Q8IZW8 715 aa18.44■□□□□ 0.54
SMARCE1-216ENST00000580419 SPINK5Q9NQ38 1064 aaPredicted RBP18.44■□□□□ 0.54
SMARCE1-216ENST00000580419 KIF4BQ2VIQ3 1234 aa18.43■□□□□ 0.54
SMARCE1-216ENST00000580419 STRIP1Q5VSL9 837 aa18.43■□□□□ 0.54
SMARCE1-216ENST00000580419 SAMD7Q7Z3H4 446 aa18.43■□□□□ 0.54
SMARCE1-216ENST00000580419 KRT26Q7Z3Y9 468 aa18.43■□□□□ 0.54
SMARCE1-216ENST00000580419 DCPSQ96C86 337 aaKnown RBP18.43■□□□□ 0.54
SMARCE1-216ENST00000580419 GPR101Q96P66 508 aaPredicted RBP18.43■□□□□ 0.54
SMARCE1-216ENST00000580419 SHTN1A0MZ66 631 aa18.42■□□□□ 0.54
SMARCE1-216ENST00000580419 USP17L8P0C7I0 530 aa18.42■□□□□ 0.54
SMARCE1-216ENST00000580419 FMR1Q06787 632 aaKnown RBP eCLIP18.42■□□□□ 0.54
SMARCE1-216ENST00000580419 TBC1D10BQ4KMP7 808 aaPredicted RBP18.42■□□□□ 0.54
SMARCE1-216ENST00000580419 FAM9BQ8IZU0 186 aa18.42■□□□□ 0.54
SMARCE1-216ENST00000580419 CCDC85AQ96PX6 553 aaPredicted RBP18.42■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms