RNA–Protein interactions for RNA: ENST00000580222.5

LIMD2-209, Transcript of LIM domain containing 2, humanhuman

TSL 3

Gene LIMD2, Length 846 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD2-209ENST00000580222 SH3TC1Q8TE82 1336 aa25.31■■□□□ 1.64
LIMD2-209ENST00000580222 MKI67P46013 3256 aaKnown RBP25.29■■□□□ 1.64
LIMD2-209ENST00000580222 POLR2AP24928 1970 aaKnown RBP25.29■■□□□ 1.64
LIMD2-209ENST00000580222 VIL1P09327 827 aaKnown RBP25.29■■□□□ 1.64
LIMD2-209ENST00000580222 TMC4Q7Z404 712 aa25.29■■□□□ 1.64
LIMD2-209ENST00000580222 SCAF8Q9UPN6 1271 aaKnown RBP25.29■■□□□ 1.64
LIMD2-209ENST00000580222 TSPYL4Q9UJ04 414 aa25.28■■□□□ 1.64
LIMD2-209ENST00000580222 ANKRD36CQ5JPF3 1778 aa25.27■■□□□ 1.64
LIMD2-209ENST00000580222 SCARF1Q14162 830 aa25.27■■□□□ 1.64
LIMD2-209ENST00000580222 ANGEL2Q5VTE6 544 aaKnown RBP25.27■■□□□ 1.64
LIMD2-209ENST00000580222 TBC1D16Q8TBP0 767 aa25.27■■□□□ 1.64
LIMD2-209ENST00000580222 LRRC37AA6NMS7 1700 aa25.26■■□□□ 1.63
LIMD2-209ENST00000580222 HSP90AB3PQ58FF7 597 aa25.26■■□□□ 1.63
LIMD2-209ENST00000580222 MRS2Q9HD23 443 aa25.26■■□□□ 1.63
LIMD2-209ENST00000580222 UBE2Q2LH0YL09 131 aa25.25■■□□□ 1.63
LIMD2-209ENST00000580222 SF3B3Q15393 1217 aaKnown RBP25.25■■□□□ 1.63
LIMD2-209ENST00000580222 PKN2Q16513 984 aaKnown RBP25.25■■□□□ 1.63
LIMD2-209ENST00000580222 FAM89AQ96GI7 184 aa25.25■■□□□ 1.63
LIMD2-209ENST00000580222 HDAC9Q9UKV0 1011 aa25.25■■□□□ 1.63
LIMD2-209ENST00000580222 ZNF280AP59817 542 aaPredicted RBP25.24■■□□□ 1.63
LIMD2-209ENST00000580222 CCDC184Q52MB2 194 aa25.24■■□□□ 1.63
LIMD2-209ENST00000580222 PRAMEF18Q5VWM3 479 aa25.24■■□□□ 1.63
LIMD2-209ENST00000580222 REM2Q8IYK8 340 aaPredicted RBP25.24■■□□□ 1.63
LIMD2-209ENST00000580222 R3HDMLQ9H3Y0 253 aa25.24■■□□□ 1.63
LIMD2-209ENST00000580222 HTTP42858 3142 aa25.24■■□□□ 1.63
LIMD2-209ENST00000580222 MIER1Q8N108 512 aa25.23■■□□□ 1.63
LIMD2-209ENST00000580222 DLG5Q8TDM6 1919 aa25.23■■□□□ 1.63
LIMD2-209ENST00000580222 KRT24Q2M2I5 525 aa25.22■■□□□ 1.63
LIMD2-209ENST00000580222 AKAP11Q9UKA4 1901 aa25.22■■□□□ 1.63
LIMD2-209ENST00000580222 GPR25O00155 361 aa25.21■■□□□ 1.63
LIMD2-209ENST00000580222 WDR43Q15061 677 aaKnown RBP eCLIP25.21■■□□□ 1.63
LIMD2-209ENST00000580222 RTL5Q5HYW3 569 aaPredicted RBP25.21■■□□□ 1.63
LIMD2-209ENST00000580222 HABP4Q5JVS0 413 aaKnown RBP25.21■■□□□ 1.63
LIMD2-209ENST00000580222 GMLQ99445 158 aa25.2■■□□□ 1.62
LIMD2-209ENST00000580222 EYA3Q99504 573 aa25.2■■□□□ 1.62
LIMD2-209ENST00000580222 SCN9AQ15858 1988 aa25.19■■□□□ 1.62
LIMD2-209ENST00000580222 ATP5J2-PTCD1G3V325 749 aa25.19■■□□□ 1.62
LIMD2-209ENST00000580222 CCER2I3L3R5 266 aa25.19■■□□□ 1.62
LIMD2-209ENST00000580222 NEFMP07197 916 aa25.19■■□□□ 1.62
LIMD2-209ENST00000580222 FKBP1BP68106 108 aa25.19■■□□□ 1.62
LIMD2-209ENST00000580222 FBXO46Q6PJ61 603 aaPredicted RBP25.19■■□□□ 1.62
LIMD2-209ENST00000580222 ISCA1Q9BUE6 129 aa25.19■■□□□ 1.62
LIMD2-209ENST00000580222 ZC3H12CQ9C0D7 883 aaKnown RBP25.19■■□□□ 1.62
LIMD2-209ENST00000580222 TM4SF4P48230 202 aa25.18■■□□□ 1.62
LIMD2-209ENST00000580222 RPS8P62241 208 aaKnown RBP25.18■■□□□ 1.62
LIMD2-209ENST00000580222 MKRN3Q13064 507 aaKnown RBP25.18■■□□□ 1.62
LIMD2-209ENST00000580222 RSBN1LQ6PCB5 846 aaPredicted RBP25.18■■□□□ 1.62
LIMD2-209ENST00000580222 SEC31BQ9NQW1 1179 aa25.17■■□□□ 1.62
LIMD2-209ENST00000580222 DDX60Q8IY21 1712 aaKnown RBP25.16■■□□□ 1.62
LIMD2-209ENST00000580222 MYOZ2Q9NPC6 264 aa25.16■■□□□ 1.62
LIMD2-209ENST00000580222 PODXL2Q9NZ53 605 aa25.16■■□□□ 1.62
LIMD2-209ENST00000580222 UFL1O94874 794 aa25.15■■□□□ 1.62
LIMD2-209ENST00000580222 AGBL3Q8NEM8 1001 aa25.15■■□□□ 1.62
LIMD2-209ENST00000580222 CHPF2Q9P2E5 772 aa25.15■■□□□ 1.62
LIMD2-209ENST00000580222 PAPPA2Q9BXP8 1791 aa25.14■■□□□ 1.62
LIMD2-209ENST00000580222 WTIPA6NIX2 430 aaPredicted RBP25.14■■□□□ 1.62
LIMD2-209ENST00000580222 NBPF9Q3BBW0 867 aa25.14■■□□□ 1.62
LIMD2-209ENST00000580222 NOM1Q5C9Z4 860 aaKnown RBP25.14■■□□□ 1.62
LIMD2-209ENST00000580222 PLBD2Q8NHP8 589 aa25.14■■□□□ 1.62
LIMD2-209ENST00000580222 GCC1Q96CN9 775 aa25.14■■□□□ 1.62
LIMD2-209ENST00000580222 CENPFP49454 3210 aa25.13■■□□□ 1.61
LIMD2-209ENST00000580222 POTEFA5A3E0 1075 aa25.13■■□□□ 1.61
LIMD2-209ENST00000580222 IRS4O14654 1257 aaPredicted RBP25.13■■□□□ 1.61
LIMD2-209ENST00000580222 USP17L8P0C7I0 530 aa25.13■■□□□ 1.61
LIMD2-209ENST00000580222 PITPNM2Q9BZ72 1349 aa25.12■■□□□ 1.61
LIMD2-209ENST00000580222 ZNF609O15014 1411 aa25.12■■□□□ 1.61
LIMD2-209ENST00000580222 RIPK4P57078 832 aa25.12■■□□□ 1.61
LIMD2-209ENST00000580222 ANKRD13DQ6ZTN6 518 aa25.12■■□□□ 1.61
LIMD2-209ENST00000580222 G3V3G9 751 aa25.11■■□□□ 1.61
LIMD2-209ENST00000580222 FKTNO75072 461 aa25.11■■□□□ 1.61
LIMD2-209ENST00000580222 DCAF8Q5TAQ9 597 aa25.11■■□□□ 1.61
LIMD2-209ENST00000580222 MXD3Q9BW11 206 aa25.11■■□□□ 1.61
LIMD2-209ENST00000580222 ANKIB1Q9P2G1 1089 aa25.11■■□□□ 1.61
LIMD2-209ENST00000580222 GGA1Q9UJY5 639 aa25.11■■□□□ 1.61
LIMD2-209ENST00000580222 MAPK8IP3Q9UPT6 1336 aa25.11■■□□□ 1.61
LIMD2-209ENST00000580222 PTPN12Q05209 780 aaKnown RBP25.1■■□□□ 1.61
LIMD2-209ENST00000580222 BABAM1Q9NWV8 329 aa25.1■■□□□ 1.61
LIMD2-209ENST00000580222 BRCA2P51587 3418 aa25.09■■□□□ 1.61
LIMD2-209ENST00000580222 TTLL12Q14166 644 aaPredicted RBP25.09■■□□□ 1.61
LIMD2-209ENST00000580222 CFHR5Q9BXR6 569 aa25.09■■□□□ 1.61
LIMD2-209ENST00000580222 PNNQ9H307 717 aaKnown RBP25.09■■□□□ 1.61
LIMD2-209ENST00000580222 ADAMTS8Q9UP79 889 aa25.08■■□□□ 1.61
LIMD2-209ENST00000580222 FAM9BQ8IZU0 186 aa25.07■■□□□ 1.6
LIMD2-209ENST00000580222 USP17L3A6NCW0 530 aa25.06■■□□□ 1.6
LIMD2-209ENST00000580222 USP17L4A6NCW7 530 aa25.06■■□□□ 1.6
LIMD2-209ENST00000580222 FXR1P51114 621 aaKnown RBP eCLIP25.06■■□□□ 1.6
LIMD2-209ENST00000580222 TRIM28Q13263 835 aaKnown RBP25.06■■□□□ 1.6
LIMD2-209ENST00000580222 PRKG1Q13976 671 aa25.06■■□□□ 1.6
LIMD2-209ENST00000580222 USP17L1Q7RTZ2 530 aa25.06■■□□□ 1.6
LIMD2-209ENST00000580222 JARID2Q92833 1246 aaPredicted RBP25.06■■□□□ 1.6
LIMD2-209ENST00000580222 CCDC85AQ96PX6 553 aaPredicted RBP25.06■■□□□ 1.6
LIMD2-209ENST00000580222 FZD1Q9UP38 647 aa25.06■■□□□ 1.6
LIMD2-209ENST00000580222 CHL1O00533 1208 aa25.05■■□□□ 1.6
LIMD2-209ENST00000580222 WNT10BO00744 389 aa25.04■■□□□ 1.6
LIMD2-209ENST00000580222 TMPOP42166 694 aaKnown RBP25.04■■□□□ 1.6
LIMD2-209ENST00000580222 SREBF2Q12772 1141 aa25.03■■□□□ 1.6
LIMD2-209ENST00000580222 LDLRAD1Q5T700 205 aa25.03■■□□□ 1.6
LIMD2-209ENST00000580222 HDGFL1Q5TGJ6 251 aa25.03■■□□□ 1.6
LIMD2-209ENST00000580222 SPRYD7Q5W111 196 aa25.03■■□□□ 1.6
LIMD2-209ENST00000580222 OTOP1Q7RTM1 612 aa25.03■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms