RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 COL22A1Q8NFW1 1626 aaPredicted RBP8.04□□□□□ -1.12
VPS53-219ENST00000576019 STK10O94804 968 aaKnown RBP8.04□□□□□ -1.12
VPS53-219ENST00000576019 CTSHP09668 335 aa8.04□□□□□ -1.12
VPS53-219ENST00000576019 ATF3P18847 181 aa8.04□□□□□ -1.12
VPS53-219ENST00000576019 NBPF8Q3BBV2 869 aa8.04□□□□□ -1.12
VPS53-219ENST00000576019 LINC01559Q495D7 138 aa8.04□□□□□ -1.12
VPS53-219ENST00000576019 ALG1LQ6GMV1 187 aa8.04□□□□□ -1.12
VPS53-219ENST00000576019 ZNF746Q6NUN9 644 aaPredicted RBP8.04□□□□□ -1.12
VPS53-219ENST00000576019 USP48Q86UV5 1035 aa8.04□□□□□ -1.12
VPS53-219ENST00000576019 ATCAYQ86WG3 371 aa8.04□□□□□ -1.12
VPS53-219ENST00000576019 ZNF654Q8IZM8 581 aa8.04□□□□□ -1.12
VPS53-219ENST00000576019 KCTD12Q96CX2 325 aaKnown RBP8.04□□□□□ -1.12
VPS53-219ENST00000576019 SPSB2Q99619 263 aa8.04□□□□□ -1.12
VPS53-219ENST00000576019 STIM2Q9P246 746 aa8.04□□□□□ -1.12
VPS53-219ENST00000576019 KLHL42Q9P2K6 505 aa8.04□□□□□ -1.12
VPS53-219ENST00000576019 GOLGA8CPA6NN73 597 aa8.03□□□□□ -1.12
VPS53-219ENST00000576019 RGS19P49795 217 aa8.03□□□□□ -1.12
VPS53-219ENST00000576019 IGBP1P78318 339 aa8.03□□□□□ -1.12
VPS53-219ENST00000576019 C4orf48Q5BLP8 95 aa8.03□□□□□ -1.12
VPS53-219ENST00000576019 COX20Q5RI15 118 aa8.03□□□□□ -1.12
VPS53-219ENST00000576019 CFHR5Q9BXR6 569 aa8.03□□□□□ -1.12
VPS53-219ENST00000576019 C19orf44Q9H6X5 657 aa8.03□□□□□ -1.12
VPS53-219ENST00000576019 HCSTQ9UBK5 93 aa8.03□□□□□ -1.12
VPS53-219ENST00000576019 EID1Q9Y6B2 187 aa8.03□□□□□ -1.12
VPS53-219ENST00000576019 MRPL42Q9Y6G3 142 aaKnown RBP8.03□□□□□ -1.12
VPS53-219ENST00000576019 CHD2O14647 1828 aaKnown RBP8.03□□□□□ -1.12
VPS53-219ENST00000576019 MYOM2P54296 1465 aa8.02□□□□□ -1.13
VPS53-219ENST00000576019 MAP3K5Q99683 1374 aa8.02□□□□□ -1.13
VPS53-219ENST00000576019 A0A1W2PRU2 124 aa8.02□□□□□ -1.13
VPS53-219ENST00000576019 PPP1R12BO60237 982 aaPredicted RBP8.02□□□□□ -1.13
VPS53-219ENST00000576019 FGRP09769 529 aa8.02□□□□□ -1.13
VPS53-219ENST00000576019 HSPA1AP0DMV8 641 aaKnown RBP8.02□□□□□ -1.13
VPS53-219ENST00000576019 HSPA1BP0DMV9 641 aaKnown RBP8.02□□□□□ -1.13
VPS53-219ENST00000576019 TBCELQ5QJ74 424 aa8.02□□□□□ -1.13
VPS53-219ENST00000576019 SOGA3Q5TF21 947 aa8.02□□□□□ -1.13
VPS53-219ENST00000576019 THSD4Q6ZMP0 1018 aa8.02□□□□□ -1.13
VPS53-219ENST00000576019 BPHLQ86WA6 291 aaPredicted RBP8.02□□□□□ -1.13
VPS53-219ENST00000576019 BAP1Q92560 729 aa8.02□□□□□ -1.13
VPS53-219ENST00000576019 KCNB2Q92953 911 aa8.02□□□□□ -1.13
VPS53-219ENST00000576019 WNT2BQ93097 391 aa8.02□□□□□ -1.13
VPS53-219ENST00000576019 SERTAD1Q9UHV2 236 aa8.02□□□□□ -1.13
VPS53-219ENST00000576019 POLIQ9UNA4 740 aa8.02□□□□□ -1.13
VPS53-219ENST00000576019 SLIT2O94813 1529 aa8.02□□□□□ -1.13
VPS53-219ENST00000576019 USP19O94966 1318 aa8.02□□□□□ -1.13
VPS53-219ENST00000576019 ZBTB39O15060 712 aa8.01□□□□□ -1.13
VPS53-219ENST00000576019 TNRC18O15417 2968 aaPredicted RBP8.01□□□□□ -1.13
VPS53-219ENST00000576019 SCNN1DP51172 638 aa8.01□□□□□ -1.13
VPS53-219ENST00000576019 GDF10P55107 478 aa8.01□□□□□ -1.13
VPS53-219ENST00000576019 GPR162Q16538 588 aa8.01□□□□□ -1.13
VPS53-219ENST00000576019 FAM26DQ5JW98 314 aa8.01□□□□□ -1.13
VPS53-219ENST00000576019 UNC5CLQ8IV45 518 aa8.01□□□□□ -1.13
VPS53-219ENST00000576019 SLC26A8Q96RN1 970 aa8.01□□□□□ -1.13
VPS53-219ENST00000576019 BUD13Q9BRD0 619 aaKnown RBP eCLIP8.01□□□□□ -1.13
VPS53-219ENST00000576019 CROCC2H7BZ55 1655 aa8.01□□□□□ -1.13
VPS53-219ENST00000576019 LAMC1P11047 1609 aa8□□□□□ -1.13
VPS53-219ENST00000576019 HNRNPMP52272 730 aaKnown RBP eCLIP8□□□□□ -1.134e-6■■□□□ 11.9
VPS53-219ENST00000576019 EPHA4P54764 986 aa8□□□□□ -1.13
VPS53-219ENST00000576019 VPS37DQ86XT2 251 aa8□□□□□ -1.13
VPS53-219ENST00000576019 ABTB2Q8N961 1025 aa8□□□□□ -1.13
VPS53-219ENST00000576019 ANKK1Q8NFD2 765 aa8□□□□□ -1.13
VPS53-219ENST00000576019 SRA1Q9HD15 236 aaKnown RBP8□□□□□ -1.13
VPS53-219ENST00000576019 HPS5Q9UPZ3 1129 aa8□□□□□ -1.13
VPS53-219ENST00000576019 AK5Q9Y6K8 562 aa8□□□□□ -1.13
VPS53-219ENST00000576019 DCCP43146 1447 aa8□□□□□ -1.13
VPS53-219ENST00000576019 FMN1Q68DA7 1419 aa8□□□□□ -1.13
VPS53-219ENST00000576019 SPAG9O60271 1321 aaKnown RBP8□□□□□ -1.13
VPS53-219ENST00000576019 ERVK-7P63135 1459 aa8□□□□□ -1.13
VPS53-219ENST00000576019 PDE4DIPQ5VU43 2346 aa8□□□□□ -1.13
VPS53-219ENST00000576019 PREX2Q70Z35 1606 aa8□□□□□ -1.13
VPS53-219ENST00000576019 ADCY9O60503 1353 aa7.99□□□□□ -1.13
VPS53-219ENST00000576019 TMEM2Q9UHN6 1383 aa7.99□□□□□ -1.13
VPS53-219ENST00000576019 BACH1O14867 736 aa7.99□□□□□ -1.13
VPS53-219ENST00000576019 PPP4CP60510 307 aa7.99□□□□□ -1.13
VPS53-219ENST00000576019 ORC1Q13415 861 aa7.99□□□□□ -1.13
VPS53-219ENST00000576019 HS2ST1Q7LGA3 356 aa7.99□□□□□ -1.13
VPS53-219ENST00000576019 GJD3Q8N144 294 aa7.99□□□□□ -1.13
VPS53-219ENST00000576019 DDX17Q92841 729 aaKnown RBP7.99□□□□□ -1.13
VPS53-219ENST00000576019 UTP3Q9NQZ2 479 aaKnown RBP eCLIP7.99□□□□□ -1.132e-6■■■■■ 296.9
VPS53-219ENST00000576019 GGT7Q9UJ14 662 aa7.99□□□□□ -1.13
VPS53-219ENST00000576019 PPME1Q9Y570 386 aa7.99□□□□□ -1.13
VPS53-219ENST00000576019 TMEM131LA2VDJ0 1609 aa7.99□□□□□ -1.13
VPS53-219ENST00000576019 EFCAB6Q5THR3 1501 aa7.98□□□□□ -1.13
VPS53-219ENST00000576019 MST1RQ04912 1400 aa7.98□□□□□ -1.13
VPS53-219ENST00000576019 SOWAHBA6NEL2 793 aa7.98□□□□□ -1.13
VPS53-219ENST00000576019 ZBTB24O43167 697 aaPredicted RBP7.98□□□□□ -1.13
VPS53-219ENST00000576019 IBSPP21815 317 aaPredicted RBP7.98□□□□□ -1.13
VPS53-219ENST00000576019 BRD2P25440 801 aaKnown RBP7.98□□□□□ -1.13
VPS53-219ENST00000576019 ANAPC15P60006 121 aa7.98□□□□□ -1.13
VPS53-219ENST00000576019 DNM1Q05193 864 aaKnown RBP7.98□□□□□ -1.13
VPS53-219ENST00000576019 ZNF511Q8NB15 262 aa7.98□□□□□ -1.13
VPS53-219ENST00000576019 MRFAP1L1Q96HT8 127 aa7.98□□□□□ -1.13
VPS53-219ENST00000576019 CSRNP1Q96S65 589 aa7.98□□□□□ -1.13
VPS53-219ENST00000576019 LRFN2Q9ULH4 789 aa7.98□□□□□ -1.13
VPS53-219ENST00000576019 PITPNM2Q9BZ72 1349 aa7.98□□□□□ -1.13
VPS53-219ENST00000576019 TLL1O43897 1013 aa7.97□□□□□ -1.13
VPS53-219ENST00000576019 HSD3B2P26439 372 aa7.97□□□□□ -1.13
VPS53-219ENST00000576019 MZF1P28698 734 aaPredicted RBP7.97□□□□□ -1.13
VPS53-219ENST00000576019 FBF1Q8TES7 1133 aa7.97□□□□□ -1.13
VPS53-219ENST00000576019 EDEM1Q92611 657 aa7.97□□□□□ -1.13
VPS53-219ENST00000576019 C2orf49Q9BVC5 232 aaPredicted RBP7.97□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms