RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 ZNF34Q8IZ26 560 aa21.95■■□□□ 1.1
VPS53-218ENST00000575207 MAP3K15Q6ZN16 1313 aa21.95■■□□□ 1.1
VPS53-218ENST00000575207 PTPN12Q05209 780 aaKnown RBP21.94■■□□□ 1.1
VPS53-218ENST00000575207 DEFB123Q8N688 67 aa21.94■■□□□ 1.1
VPS53-218ENST00000575207 ERBB4Q15303 1308 aa21.94■■□□□ 1.1
VPS53-218ENST00000575207 SP3Q02447 781 aa21.93■■□□□ 1.1
VPS53-218ENST00000575207 NR2E3Q9Y5X4 410 aa21.93■■□□□ 1.1
VPS53-218ENST00000575207 IGF2BP3O00425 579 aaKnown RBP eCLIP21.92■■□□□ 1.1
VPS53-218ENST00000575207 ECE2O60344 883 aa21.92■■□□□ 1.1
VPS53-218ENST00000575207 PRAMEF18Q5VWM3 479 aa21.92■■□□□ 1.1
VPS53-218ENST00000575207 GAS2L2Q8NHY3 880 aa21.92■■□□□ 1.1
VPS53-218ENST00000575207 PTCH2Q9Y6C5 1203 aa21.92■■□□□ 1.1
VPS53-218ENST00000575207 ZBTB7BO15156 539 aaPredicted RBP21.91■■□□□ 1.1
VPS53-218ENST00000575207 LDLRAD1Q5T700 205 aa21.91■■□□□ 1.1
VPS53-218ENST00000575207 TMC4Q7Z404 712 aa21.91■■□□□ 1.1
VPS53-218ENST00000575207 PPP1R42Q7Z4L9 355 aa21.91■■□□□ 1.1
VPS53-218ENST00000575207 GRAPQ13588 217 aa21.9■■□□□ 1.1
VPS53-218ENST00000575207 GRAPLQ8TC17 118 aaPredicted RBP21.9■■□□□ 1.1
VPS53-218ENST00000575207 SHISA4Q96DD7 197 aa21.9■■□□□ 1.1
VPS53-218ENST00000575207 HTATIP2Q9BUP3 242 aa21.9■■□□□ 1.1
VPS53-218ENST00000575207 SCAF8Q9UPN6 1271 aaKnown RBP21.9■■□□□ 1.1
VPS53-218ENST00000575207 TTC28Q96AY4 2481 aa21.89■■□□□ 1.1
VPS53-218ENST00000575207 NF2P35240 595 aa21.89■■□□□ 1.09
VPS53-218ENST00000575207 CRHR2Q13324 411 aa21.89■■□□□ 1.09
VPS53-218ENST00000575207 UBE2Q1Q7Z7E8 422 aa21.89■■□□□ 1.09
VPS53-218ENST00000575207 MTMR10Q9NXD2 777 aa21.89■■□□□ 1.09
VPS53-218ENST00000575207 RIMBP2O15034 1052 aa21.88■■□□□ 1.09
VPS53-218ENST00000575207 ARMC9Q7Z3E5 817 aa21.88■■□□□ 1.09
VPS53-218ENST00000575207 AGBL3Q8NEM8 1001 aa21.88■■□□□ 1.09
VPS53-218ENST00000575207 ARHGEF6Q15052 776 aa21.87■■□□□ 1.09
VPS53-218ENST00000575207 DOK7Q18PE1 504 aa21.87■■□□□ 1.09
VPS53-218ENST00000575207 PARP10Q53GL7 1025 aa21.87■■□□□ 1.09
VPS53-218ENST00000575207 TTLL7Q6ZT98 887 aa21.87■■□□□ 1.09
VPS53-218ENST00000575207 Q7L0L9 218 aa21.87■■□□□ 1.09
VPS53-218ENST00000575207 MYOZ2Q9NPC6 264 aa21.87■■□□□ 1.09
VPS53-218ENST00000575207 SCN9AQ15858 1988 aa21.87■■□□□ 1.09
VPS53-218ENST00000575207 MUC3AQ02505 3323 aa21.86■■□□□ 1.09
VPS53-218ENST00000575207 LRRC37AA6NMS7 1700 aa21.86■■□□□ 1.09
VPS53-218ENST00000575207 MYCP01106 439 aaPredicted RBP21.86■■□□□ 1.09
VPS53-218ENST00000575207 ZBTB48P10074 688 aaPredicted RBP21.86■■□□□ 1.09
VPS53-218ENST00000575207 KIF6Q6ZMV9 814 aa21.86■■□□□ 1.09
VPS53-218ENST00000575207 DDX46Q7L014 1031 aaKnown RBP21.86■■□□□ 1.09
VPS53-218ENST00000575207 NGEFQ8N5V2 710 aa21.86■■□□□ 1.09
VPS53-218ENST00000575207 POLLQ9UGP5 575 aa21.86■■□□□ 1.09
VPS53-218ENST00000575207 COL9A1P20849 921 aa21.85■■□□□ 1.09
VPS53-218ENST00000575207 NSFL1CQ9UNZ2 370 aaKnown RBP21.85■■□□□ 1.09
VPS53-218ENST00000575207 DDX60Q8IY21 1712 aaKnown RBP21.85■■□□□ 1.09
VPS53-218ENST00000575207 ANKRD36CQ5JPF3 1778 aa21.84■■□□□ 1.09
VPS53-218ENST00000575207 OTUD7BQ6GQQ9 843 aa21.84■■□□□ 1.09
VPS53-218ENST00000575207 GIGYF2Q6Y7W6 1299 aaKnown RBP21.84■■□□□ 1.09
VPS53-218ENST00000575207 GMLQ99445 158 aa21.84■■□□□ 1.09
VPS53-218ENST00000575207 UTP14AQ9BVJ6 771 aaKnown RBP21.84■■□□□ 1.09
VPS53-218ENST00000575207 ZBTB3Q9H5J0 574 aa21.84■■□□□ 1.09
VPS53-218ENST00000575207 LAMB1P07942 1786 aa21.84■■□□□ 1.09
VPS53-218ENST00000575207 USP17L8P0C7I0 530 aa21.83■■□□□ 1.09
VPS53-218ENST00000575207 RSBN1LQ6PCB5 846 aaPredicted RBP21.83■■□□□ 1.09
VPS53-218ENST00000575207 EYA3Q99504 573 aa21.83■■□□□ 1.09
VPS53-218ENST00000575207 C6orf229H3BNL8 230 aa21.82■■□□□ 1.08
VPS53-218ENST00000575207 SH3TC2Q8TF17 1288 aa21.82■■□□□ 1.08
VPS53-218ENST00000575207 PANK3Q9H999 370 aa21.82■■□□□ 1.08
VPS53-218ENST00000575207 NKX2-3Q8TAU0 364 aa21.81■■□□□ 1.08
VPS53-218ENST00000575207 SLC10A4Q96EP9 437 aa21.81■■□□□ 1.08
VPS53-218ENST00000575207 STAP2Q9UGK3 403 aa21.81■■□□□ 1.08
VPS53-218ENST00000575207 TAF1P21675 1872 aa21.8■■□□□ 1.08
VPS53-218ENST00000575207 LAMB2P55268 1798 aa21.8■■□□□ 1.08
VPS53-218ENST00000575207 DIAPH1O60610 1272 aaKnown RBP21.8■■□□□ 1.08
VPS53-218ENST00000575207 NBPF9Q3BBW0 867 aa21.8■■□□□ 1.08
VPS53-218ENST00000575207 WNK4Q96J92 1243 aa21.8■■□□□ 1.08
VPS53-218ENST00000575207 EYSQ5T1H1 3165 aa21.8■■□□□ 1.08
VPS53-218ENST00000575207 ZNF646O15015 1829 aaPredicted RBP21.8■■□□□ 1.08
VPS53-218ENST00000575207 PRKG1Q13976 671 aa21.79■■□□□ 1.08
VPS53-218ENST00000575207 ANGEL1Q9UNK9 670 aaKnown RBP21.79■■□□□ 1.08
VPS53-218ENST00000575207 BMP8BP34820 402 aa21.78■■□□□ 1.08
VPS53-218ENST00000575207 LRIT3Q3SXY7 679 aa21.78■■□□□ 1.08
VPS53-218ENST00000575207 PTPN18Q99952 460 aa21.78■■□□□ 1.08
VPS53-218ENST00000575207 PRUNE2Q8WUY3 3088 aa21.77■■□□□ 1.08
VPS53-218ENST00000575207 TESPA1A2RU30 521 aaPredicted RBP21.77■■□□□ 1.08
VPS53-218ENST00000575207 HCLS1P14317 486 aaPredicted RBP21.77■■□□□ 1.08
VPS53-218ENST00000575207 GJA8P48165 433 aa21.77■■□□□ 1.08
VPS53-218ENST00000575207 GPSM2P81274 684 aa21.77■■□□□ 1.08
VPS53-218ENST00000575207 MAP3K11Q16584 847 aa21.77■■□□□ 1.08
VPS53-218ENST00000575207 TBC1D16Q8TBP0 767 aa21.77■■□□□ 1.08
VPS53-218ENST00000575207 ZC3H12CQ9C0D7 883 aaKnown RBP21.77■■□□□ 1.08
VPS53-218ENST00000575207 PLA2G5P39877 138 aa21.76■■□□□ 1.07
VPS53-218ENST00000575207 MTFR1Q15390 333 aa21.76■■□□□ 1.07
VPS53-218ENST00000575207 LAMB4A4D0S4 1761 aa21.75■■□□□ 1.07
VPS53-218ENST00000575207 UNCXA6NJT0 531 aa21.75■■□□□ 1.07
VPS53-218ENST00000575207 GDF15Q99988 308 aa21.75■■□□□ 1.07
VPS53-218ENST00000575207 RRP7AQ9Y3A4 280 aaKnown RBP21.75■■□□□ 1.07
VPS53-218ENST00000575207 WNT10BO00744 389 aa21.74■■□□□ 1.07
VPS53-218ENST00000575207 POLR3GLQ9BT43 218 aa21.74■■□□□ 1.07
VPS53-218ENST00000575207 EVI5O60447 810 aa21.73■■□□□ 1.07
VPS53-218ENST00000575207 GJB1P08034 283 aa21.73■■□□□ 1.07
VPS53-218ENST00000575207 CLMNQ96JQ2 1002 aa21.73■■□□□ 1.07
VPS53-218ENST00000575207 CELF1Q92879 486 aaKnown RBP21.72■■□□□ 1.07
VPS53-218ENST00000575207 FZD1Q9UP38 647 aa21.72■■□□□ 1.07
VPS53-218ENST00000575207 RPTORQ8N122 1335 aa21.72■■□□□ 1.07
VPS53-218ENST00000575207 PSME4Q14997 1843 aa21.71■■□□□ 1.07
VPS53-218ENST00000575207 MYL6BP14649 208 aa21.71■■□□□ 1.07
VPS53-218ENST00000575207 G3V3G9 751 aa21.7■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms