RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 JAKMIP1Q96N16 626 aaKnown RBP11.24□□□□□ -0.61
CCDC40-212ENST00000574799 LRRFIP2Q9Y608 721 aaKnown RBP11.24□□□□□ -0.61
CCDC40-212ENST00000574799 AP5Z1O43299 807 aa11.24□□□□□ -0.61
CCDC40-212ENST00000574799 SMC2O95347 1197 aa11.24□□□□□ -0.61
CCDC40-212ENST00000574799 AK2P54819 239 aa11.24□□□□□ -0.61
CCDC40-212ENST00000574799 STK31Q9BXU1 1019 aa11.24□□□□□ -0.61
CCDC40-212ENST00000574799 CHMLP26374 656 aa11.23□□□□□ -0.61
CCDC40-212ENST00000574799 ATP8B2P98198 1209 aa11.23□□□□□ -0.61
CCDC40-212ENST00000574799 CCDC69A6NI79 296 aa11.23□□□□□ -0.61
CCDC40-212ENST00000574799 GNAI2P04899 355 aa11.23□□□□□ -0.61
CCDC40-212ENST00000574799 ZKSCAN1P17029 563 aaPredicted RBP11.23□□□□□ -0.61
CCDC40-212ENST00000574799 ATF3P18847 181 aa11.23□□□□□ -0.61
CCDC40-212ENST00000574799 LMAN1P49257 510 aa11.23□□□□□ -0.61
CCDC40-212ENST00000574799 SKIDA1Q1XH10 827 aa11.23□□□□□ -0.61
CCDC40-212ENST00000574799 NUTM1Q86Y26 1132 aa11.23□□□□□ -0.61
CCDC40-212ENST00000574799 TXLNBQ8N3L3 684 aa11.23□□□□□ -0.61
CCDC40-212ENST00000574799 NECAB1Q8N987 351 aa11.23□□□□□ -0.61
CCDC40-212ENST00000574799 PDRG1Q9NUG6 133 aa11.23□□□□□ -0.61
CCDC40-212ENST00000574799 PLEKHO1Q53GL0 409 aaPredicted RBP11.23□□□□□ -0.61
CCDC40-212ENST00000574799 LMOD2Q6P5Q4 547 aa11.23□□□□□ -0.61
CCDC40-212ENST00000574799 CADPS2Q86UW7 1296 aa11.23□□□□□ -0.61
CCDC40-212ENST00000574799 SSH3Q8TE77 659 aa11.23□□□□□ -0.61
CCDC40-212ENST00000574799 USP16Q9Y5T5 823 aa11.23□□□□□ -0.61
CCDC40-212ENST00000574799 URI1O94763 535 aaPredicted RBP11.22□□□□□ -0.61
CCDC40-212ENST00000574799 SLC39A6Q13433 755 aa11.22□□□□□ -0.61
CCDC40-212ENST00000574799 LEKR1Q6ZMV7 388 aa11.22□□□□□ -0.61
CCDC40-212ENST00000574799 GPATCH11Q8N954 259 aa11.22□□□□□ -0.61
CCDC40-212ENST00000574799 SPG7Q9UQ90 795 aa11.22□□□□□ -0.61
CCDC40-212ENST00000574799 PI4KAP2A4QPH2 592 aa11.22□□□□□ -0.61
CCDC40-212ENST00000574799 LIG1P18858 919 aa11.22□□□□□ -0.61
CCDC40-212ENST00000574799 STK3Q13188 491 aa11.22□□□□□ -0.61
CCDC40-212ENST00000574799 UNC5CLQ8IV45 518 aa11.22□□□□□ -0.61
CCDC40-212ENST00000574799 PI4KAP1Q8N8J0 262 aa11.22□□□□□ -0.61
CCDC40-212ENST00000574799 SLC52A2Q9HAB3 445 aa11.22□□□□□ -0.61
CCDC40-212ENST00000574799 KIF2AO00139 706 aaPredicted RBP11.22□□□□□ -0.61
CCDC40-212ENST00000574799 HSP90B1P14625 803 aaKnown RBP11.22□□□□□ -0.61
CCDC40-212ENST00000574799 RAD51AP2Q09MP3 1159 aa11.22□□□□□ -0.61
CCDC40-212ENST00000574799 SYT10Q6XYQ8 523 aa11.22□□□□□ -0.61
CCDC40-212ENST00000574799 CYP46A1Q9Y6A2 500 aa11.22□□□□□ -0.61
CCDC40-212ENST00000574799 LTBP4Q8N2S1 1624 aa11.21□□□□□ -0.61
CCDC40-212ENST00000574799 NEMFO60524 1076 aa11.21□□□□□ -0.61
CCDC40-212ENST00000574799 PDCP20941 246 aa11.21□□□□□ -0.61
CCDC40-212ENST00000574799 DDX19AQ9NUU7 478 aaKnown RBP11.21□□□□□ -0.61
CCDC40-212ENST00000574799 UTYO14607 1347 aa11.21□□□□□ -0.61
CCDC40-212ENST00000574799 CCDC73Q6ZRK6 1079 aa11.21□□□□□ -0.61
CCDC40-212ENST00000574799 CCDC34Q96HJ3 373 aa11.21□□□□□ -0.61
CCDC40-212ENST00000574799 TNS2Q63HR2 1409 aa11.21□□□□□ -0.62
CCDC40-212ENST00000574799 SURF6O75683 361 aaKnown RBP11.21□□□□□ -0.62
CCDC40-212ENST00000574799 EIF2S2P20042 333 aaKnown RBP11.21□□□□□ -0.62
CCDC40-212ENST00000574799 ARID5BQ14865 1188 aa11.21□□□□□ -0.62
CCDC40-212ENST00000574799 NFATC2IPQ8NCF5 419 aa11.21□□□□□ -0.62
CCDC40-212ENST00000574799 MRVI1Q9Y6F6 885 aa11.21□□□□□ -0.62
CCDC40-212ENST00000574799 IGKV5-2P06315 115 aa11.2□□□□□ -0.62
CCDC40-212ENST00000574799 ZNF790Q6PG37 636 aa11.2□□□□□ -0.62
CCDC40-212ENST00000574799 CREBRFQ8IUR6 639 aa11.2□□□□□ -0.62
CCDC40-212ENST00000574799 SCAND2PQ9GZW5 306 aaPredicted RBP11.2□□□□□ -0.62
CCDC40-212ENST00000574799 KINO60870 393 aaKnown RBP11.2□□□□□ -0.62
CCDC40-212ENST00000574799 PRPF40BQ6NWY9 871 aaKnown RBP11.2□□□□□ -0.62
CCDC40-212ENST00000574799 SDF4Q9BRK5 362 aa11.2□□□□□ -0.62
CCDC40-212ENST00000574799 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.2□□□□□ -0.62
CCDC40-212ENST00000574799 AHDC1Q5TGY3 1603 aaPredicted RBP11.19□□□□□ -0.62
CCDC40-212ENST00000574799 RAD50Q92878 1312 aa11.19□□□□□ -0.62
CCDC40-212ENST00000574799 USP27XA6NNY8 438 aa11.19□□□□□ -0.62
CCDC40-212ENST00000574799 CNTROBQ8N137 903 aa11.19□□□□□ -0.62
CCDC40-212ENST00000574799 RUFY2Q8WXA3 655 aa11.19□□□□□ -0.62
CCDC40-212ENST00000574799 SLAIN2Q9P270 581 aa11.19□□□□□ -0.62
CCDC40-212ENST00000574799 DNAI1Q9UI46 699 aa11.19□□□□□ -0.62
CCDC40-212ENST00000574799 CASZ1Q86V15 1759 aa11.19□□□□□ -0.62
CCDC40-212ENST00000574799 CAPN2P17655 700 aa11.19□□□□□ -0.62
CCDC40-212ENST00000574799 SFPQP23246 707 aaKnown RBP eCLIP11.19□□□□□ -0.62
CCDC40-212ENST00000574799 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.19□□□□□ -0.62
CCDC40-212ENST00000574799 TMEM87AQ8NBN3 555 aa11.19□□□□□ -0.62
CCDC40-212ENST00000574799 FEZ2Q9UHY8 353 aaPredicted RBP11.19□□□□□ -0.62
CCDC40-212ENST00000574799 PHLPP1O60346 1717 aa11.19□□□□□ -0.62
CCDC40-212ENST00000574799 ZSCAN26Q16670 478 aa11.19□□□□□ -0.62
CCDC40-212ENST00000574799 CWF19L2Q2TBE0 894 aaKnown RBP11.19□□□□□ -0.62
CCDC40-212ENST00000574799 LRRC8AQ8IWT6 810 aa11.19□□□□□ -0.62
CCDC40-212ENST00000574799 PI4K2BQ8TCG2 481 aa11.19□□□□□ -0.62
CCDC40-212ENST00000574799 ZNF496Q96IT1 587 aaPredicted RBP11.19□□□□□ -0.62
CCDC40-212ENST00000574799 STAP2Q9UGK3 403 aa11.19□□□□□ -0.62
CCDC40-212ENST00000574799 COL14A1Q05707 1796 aaKnown RBP11.18□□□□□ -0.62
CCDC40-212ENST00000574799 MTX1Q13505 466 aa11.18□□□□□ -0.62
CCDC40-212ENST00000574799 TTC6Q86TZ1 520 aa11.18□□□□□ -0.62
CCDC40-212ENST00000574799 DEF6Q9H4E7 631 aa11.18□□□□□ -0.62
CCDC40-212ENST00000574799 DISP2A7MBM2 1401 aa11.18□□□□□ -0.62
CCDC40-212ENST00000574799 DNAAF4Q8WXU2 420 aa11.18□□□□□ -0.62
CCDC40-212ENST00000574799 ZSCAN31Q96LW9 406 aaPredicted RBP11.18□□□□□ -0.62
CCDC40-212ENST00000574799 WDR17Q8IZU2 1322 aa11.18□□□□□ -0.62
CCDC40-212ENST00000574799 CCDC144BQ3MJ40 725 aa11.18□□□□□ -0.62
CCDC40-212ENST00000574799 PPP1R42Q7Z4L9 355 aa11.18□□□□□ -0.62
CCDC40-212ENST00000574799 CCDC144CPQ8IYA2 1237 aa11.18□□□□□ -0.62
CCDC40-212ENST00000574799 CHMP4CQ96CF2 233 aa11.18□□□□□ -0.62
CCDC40-212ENST00000574799 TCEANC2Q96MN5 208 aa11.18□□□□□ -0.62
CCDC40-212ENST00000574799 GNAI3P08754 354 aa11.17□□□□□ -0.62
CCDC40-212ENST00000574799 CYP2C19P33261 490 aa11.17□□□□□ -0.62
CCDC40-212ENST00000574799 RBM6P78332 1123 aaKnown RBP11.17□□□□□ -0.62
CCDC40-212ENST00000574799 SF3A1Q15459 793 aaKnown RBP11.17□□□□□ -0.62
CCDC40-212ENST00000574799 CEP57L1Q8IYX8 460 aa11.17□□□□□ -0.62
CCDC40-212ENST00000574799 NAT10Q9H0A0 1025 aaKnown RBP11.17□□□□□ -0.62
CCDC40-212ENST00000574799 MTMR6Q9Y217 621 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms