RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 VGLL2Q8N8G2 317 aa16.75■□□□□ 0.27
CCDC40-209ENST00000573474 PI4K2BQ8TCG2 481 aa16.75■□□□□ 0.27
CCDC40-209ENST00000573474 BRIP1Q9BX63 1249 aa16.75■□□□□ 0.27
CCDC40-209ENST00000573474 PDE8BO95263 885 aa16.74■□□□□ 0.27
CCDC40-209ENST00000573474 TIMM10P62072 90 aa16.74■□□□□ 0.27
CCDC40-209ENST00000573474 RPGRQ92834 1020 aaKnown RBP16.74■□□□□ 0.27
CCDC40-209ENST00000573474 CELF1Q92879 486 aaKnown RBP16.74■□□□□ 0.27
CCDC40-209ENST00000573474 RBM17Q96I25 401 aaKnown RBP16.74■□□□□ 0.27
CCDC40-209ENST00000573474 NEUROD6Q96NK8 337 aa16.74■□□□□ 0.27
CCDC40-209ENST00000573474 TLR7Q9NYK1 1049 aaKnown RBP16.74■□□□□ 0.27
CCDC40-209ENST00000573474 DBNLQ9UJU6 430 aaKnown RBP16.74■□□□□ 0.27
CCDC40-209ENST00000573474 NRXN2Q9P2S2 1712 aa16.73■□□□□ 0.27
CCDC40-209ENST00000573474 ZNF609O15014 1411 aa16.73■□□□□ 0.27
CCDC40-209ENST00000573474 A0A1B0GUL7 405 aa16.73■□□□□ 0.27
CCDC40-209ENST00000573474 SDSP20132 328 aa16.73■□□□□ 0.27
CCDC40-209ENST00000573474 GRAPQ13588 217 aa16.73■□□□□ 0.27
CCDC40-209ENST00000573474 ATP2B3Q16720 1220 aa16.73■□□□□ 0.27
CCDC40-209ENST00000573474 GRAPLQ8TC17 118 aaPredicted RBP16.73■□□□□ 0.27
CCDC40-209ENST00000573474 DBNDD2Q9BQY9 259 aa16.73■□□□□ 0.27
CCDC40-209ENST00000573474 TSHZ2Q9NRE2 1034 aa16.73■□□□□ 0.27
CCDC40-209ENST00000573474 TNRC6CQ9HCJ0 1690 aaKnown RBP16.72■□□□□ 0.27
CCDC40-209ENST00000573474 HOXA10P31260 410 aaPredicted RBP16.72■□□□□ 0.27
CCDC40-209ENST00000573474 PDE6BP35913 854 aa16.72■□□□□ 0.27
CCDC40-209ENST00000573474 PUM3Q15397 648 aaKnown RBP16.72■□□□□ 0.27
CCDC40-209ENST00000573474 PDGFDQ9GZP0 370 aaPredicted RBP16.72■□□□□ 0.27
CCDC40-209ENST00000573474 ATP5JP18859 108 aa16.71■□□□□ 0.27
CCDC40-209ENST00000573474 CHRNDQ07001 517 aa16.71■□□□□ 0.27
CCDC40-209ENST00000573474 HELBQ8NG08 1087 aaPredicted RBP16.71■□□□□ 0.27
CCDC40-209ENST00000573474 LPIN2Q92539 896 aa16.71■□□□□ 0.27
CCDC40-209ENST00000573474 XAGE2Q96GT9 111 aa16.71■□□□□ 0.27
CCDC40-209ENST00000573474 CRAMP1Q96RY5 1269 aa16.71■□□□□ 0.27
CCDC40-209ENST00000573474 MINPP1Q9UNW1 487 aa16.71■□□□□ 0.27
CCDC40-209ENST00000573474 TRIM6-TRIM34B2RNG4 842 aa16.7■□□□□ 0.26
CCDC40-209ENST00000573474 CDC45O75419 566 aa16.7■□□□□ 0.26
CCDC40-209ENST00000573474 FGFR2P21802 821 aa16.7■□□□□ 0.26
CCDC40-209ENST00000573474 GORABQ5T7V8 394 aa16.7■□□□□ 0.26
CCDC40-209ENST00000573474 ANKRD2Q9GZV1 360 aa16.7■□□□□ 0.26
CCDC40-209ENST00000573474 CASZ1Q86V15 1759 aa16.69■□□□□ 0.26
CCDC40-209ENST00000573474 TAF5LO75529 589 aa16.69■□□□□ 0.26
CCDC40-209ENST00000573474 BBOX1O75936 387 aa16.69■□□□□ 0.26
CCDC40-209ENST00000573474 SLC5A1P13866 664 aa16.69■□□□□ 0.26
CCDC40-209ENST00000573474 CCDC158Q5M9N0 1113 aa16.69■□□□□ 0.26
CCDC40-209ENST00000573474 RILPL2Q969X0 211 aa16.69■□□□□ 0.26
CCDC40-209ENST00000573474 COL4A1P02462 1669 aa16.69■□□□□ 0.26
CCDC40-209ENST00000573474 IFIT1P09914 478 aaKnown RBP16.68■□□□□ 0.26
CCDC40-209ENST00000573474 NPR1P16066 1061 aa16.68■□□□□ 0.26
CCDC40-209ENST00000573474 ADORA1P30542 326 aa16.68■□□□□ 0.26
CCDC40-209ENST00000573474 CNTROBQ8N137 903 aa16.68■□□□□ 0.26
CCDC40-209ENST00000573474 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.68■□□□□ 0.26
CCDC40-209ENST00000573474 BOLA2Q9H3K6 86 aa16.68■□□□□ 0.26
CCDC40-209ENST00000573474 EIF5BO60841 1220 aaKnown RBP16.67■□□□□ 0.26
CCDC40-209ENST00000573474 MAP4K4O95819 1239 aaPredicted RBP16.67■□□□□ 0.26
CCDC40-209ENST00000573474 SRGNP10124 158 aa16.67■□□□□ 0.26
CCDC40-209ENST00000573474 UBE4AQ14139 1066 aa16.67■□□□□ 0.26
CCDC40-209ENST00000573474 CASC1Q6TDU7 716 aa16.67■□□□□ 0.26
CCDC40-209ENST00000573474 TBC1D9Q6ZT07 1266 aa16.67■□□□□ 0.26
CCDC40-209ENST00000573474 TMC4Q7Z404 712 aa16.67■□□□□ 0.26
CCDC40-209ENST00000573474 EVI5LQ96CN4 794 aa16.67■□□□□ 0.26
CCDC40-209ENST00000573474 ALDH1B1P30837 517 aa16.66■□□□□ 0.26
CCDC40-209ENST00000573474 R3HDM1Q15032 1099 aaKnown RBP16.66■□□□□ 0.26
CCDC40-209ENST00000573474 TTC39AQ5SRH9 613 aa16.66■□□□□ 0.26
CCDC40-209ENST00000573474 MASTLQ96GX5 879 aa16.66■□□□□ 0.26
CCDC40-209ENST00000573474 HAUS7Q99871 368 aa16.66■□□□□ 0.26
CCDC40-209ENST00000573474 SPEF2Q9C093 1822 aa16.66■□□□□ 0.26
CCDC40-209ENST00000573474 ANKRD31Q8N7Z5 1873 aa16.65■□□□□ 0.26
CCDC40-209ENST00000573474 H0YIN7 160 aa16.65■□□□□ 0.26
CCDC40-209ENST00000573474 C2CD5Q86YS7 1000 aa16.65■□□□□ 0.26
CCDC40-209ENST00000573474 ZNF512BQ96KM6 892 aaPredicted RBP16.65■□□□□ 0.26
CCDC40-209ENST00000573474 MTFR1LQ9H019 292 aa16.65■□□□□ 0.26
CCDC40-209ENST00000573474 TAF1P21675 1872 aa16.65■□□□□ 0.26
CCDC40-209ENST00000573474 UQCRFS1P1P0C7P4 283 aa16.64■□□□□ 0.25
CCDC40-209ENST00000573474 KCNJ4P48050 445 aa16.64■□□□□ 0.25
CCDC40-209ENST00000573474 STYK1Q6J9G0 422 aa16.64■□□□□ 0.25
CCDC40-209ENST00000573474 SNAP23O00161 211 aa16.63■□□□□ 0.25
CCDC40-209ENST00000573474 ZBTB7AO95365 584 aa16.63■□□□□ 0.25
CCDC40-209ENST00000573474 SEC24BO95487 1268 aa16.63■□□□□ 0.25
CCDC40-209ENST00000573474 CHMLP26374 656 aa16.63■□□□□ 0.25
CCDC40-209ENST00000573474 POLD1P28340 1107 aa16.63■□□□□ 0.25
CCDC40-209ENST00000573474 CCDC102BQ68D86 513 aa16.63■□□□□ 0.25
CCDC40-209ENST00000573474 SP8Q8IXZ3 490 aa16.63■□□□□ 0.25
CCDC40-209ENST00000573474 LEMD3Q9Y2U8 911 aa16.63■□□□□ 0.25
CCDC40-209ENST00000573474 PPEF1O14829 653 aaPredicted RBP16.62■□□□□ 0.25
CCDC40-209ENST00000573474 ARID4AP29374 1257 aaPredicted RBP16.62■□□□□ 0.25
CCDC40-209ENST00000573474 ZNF622Q969S3 477 aaKnown RBP eCLIP16.62■□□□□ 0.25
CCDC40-209ENST00000573474 DNAJC2Q99543 621 aaKnown RBP16.62■□□□□ 0.25
CCDC40-209ENST00000573474 ANKIB1Q9P2G1 1089 aa16.62■□□□□ 0.25
CCDC40-209ENST00000573474 XDHP47989 1333 aa16.62■□□□□ 0.25
CCDC40-209ENST00000573474 HIP1O00291 1037 aa16.61■□□□□ 0.25
CCDC40-209ENST00000573474 PHKA1P46020 1223 aa16.61■□□□□ 0.25
CCDC40-209ENST00000573474 TICAM2Q86XR7 235 aa16.61■□□□□ 0.25
CCDC40-209ENST00000573474 UPF2Q9HAU5 1272 aaKnown RBP16.61■□□□□ 0.25
CCDC40-209ENST00000573474 PAG1Q9NWQ8 432 aa16.61■□□□□ 0.25
CCDC40-209ENST00000573474 ATF5Q9Y2D1 282 aaPredicted RBP16.61■□□□□ 0.25
CCDC40-209ENST00000573474 ATP6V0A2Q9Y487 856 aa16.61■□□□□ 0.25
CCDC40-209ENST00000573474 RBM19Q9Y4C8 960 aaKnown RBP16.61■□□□□ 0.25
CCDC40-209ENST00000573474 ZNF804BA4D1E1 1349 aa16.61■□□□□ 0.25
CCDC40-209ENST00000573474 C10orf71Q711Q0 1435 aa16.61■□□□□ 0.25
CCDC40-209ENST00000573474 ARAP2Q8WZ64 1704 aa16.6■□□□□ 0.25
CCDC40-209ENST00000573474 ATP2B4P23634 1241 aa16.6■□□□□ 0.25
CCDC40-209ENST00000573474 BCAMP50895 628 aa16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms