RNA–Protein interactions for RNA: ENST00000573169.1

NUP88-206, Transcript of nucleoporin 88, humanhuman

TSL 1 (best)

Gene NUP88, Length 1,195 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-206ENST00000573169 POTECB2RU33 542 aa8.22□□□□□ -1.09
NUP88-206ENST00000573169 RRP9O43818 475 aaKnown RBP8.22□□□□□ -1.09
NUP88-206ENST00000573169 HDAC1Q13547 482 aaPredicted RBP8.22□□□□□ -1.09
NUP88-206ENST00000573169 STYK1Q6J9G0 422 aa8.22□□□□□ -1.09
NUP88-206ENST00000573169 PRPF40BQ6NWY9 871 aaKnown RBP8.22□□□□□ -1.09
NUP88-206ENST00000573169 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.22□□□□□ -1.09
NUP88-206ENST00000573169 SNX21Q969T3 373 aa8.22□□□□□ -1.09
NUP88-206ENST00000573169 RUNDC1Q96C34 613 aa8.22□□□□□ -1.09
NUP88-206ENST00000573169 RRP7AQ9Y3A4 280 aaKnown RBP8.22□□□□□ -1.09
NUP88-206ENST00000573169 PCDHB15Q9Y5E8 787 aa8.22□□□□□ -1.09
NUP88-206ENST00000573169 SLX4Q8IY92 1834 aa8.22□□□□□ -1.09
NUP88-206ENST00000573169 CCDC88AQ3V6T2 1871 aa8.21□□□□□ -1.09
NUP88-206ENST00000573169 DLG5Q8TDM6 1919 aa8.21□□□□□ -1.09
NUP88-206ENST00000573169 TIAM2Q8IVF5 1701 aa8.21□□□□□ -1.09
NUP88-206ENST00000573169 DDX11L8A8MPP1 907 aa8.21□□□□□ -1.1
NUP88-206ENST00000573169 SNPHO15079 494 aa8.21□□□□□ -1.1
NUP88-206ENST00000573169 MYL6BP14649 208 aa8.21□□□□□ -1.1
NUP88-206ENST00000573169 VEGFAP15692 232 aaPredicted RBP8.21□□□□□ -1.1
NUP88-206ENST00000573169 EIF4A1P60842 406 aaKnown RBP8.21□□□□□ -1.1
NUP88-206ENST00000573169 FSTL1Q12841 308 aa8.21□□□□□ -1.1
NUP88-206ENST00000573169 ERFEQ4G0M1 354 aa8.21□□□□□ -1.1
NUP88-206ENST00000573169 CLEC4GQ6UXB4 293 aa8.21□□□□□ -1.1
NUP88-206ENST00000573169 TTLL7Q6ZT98 887 aa8.21□□□□□ -1.1
NUP88-206ENST00000573169 SLC51AQ86UW1 340 aa8.21□□□□□ -1.1
NUP88-206ENST00000573169 CNKSR1Q969H4 720 aa8.21□□□□□ -1.1
NUP88-206ENST00000573169 MARVELD3Q96A59 401 aa8.21□□□□□ -1.1
NUP88-206ENST00000573169 MASTLQ96GX5 879 aa8.21□□□□□ -1.1
NUP88-206ENST00000573169 PDZRN3Q9UPQ7 1066 aa8.21□□□□□ -1.1
NUP88-206ENST00000573169 ZNF652Q9Y2D9 606 aa8.21□□□□□ -1.1
NUP88-206ENST00000573169 CACNA1SQ13698 1873 aa8.21□□□□□ -1.1
NUP88-206ENST00000573169 TNRC6CQ9HCJ0 1690 aaKnown RBP8.21□□□□□ -1.1
NUP88-206ENST00000573169 DDNO94850 711 aaPredicted RBP8.2□□□□□ -1.1
NUP88-206ENST00000573169 GPTP24298 496 aa8.2□□□□□ -1.1
NUP88-206ENST00000573169 RBM25P49756 843 aaKnown RBP8.2□□□□□ -1.1
NUP88-206ENST00000573169 GLIPR1L2Q4G1C9 344 aa8.2□□□□□ -1.1
NUP88-206ENST00000573169 IFFO2Q5TF58 517 aa8.2□□□□□ -1.1
NUP88-206ENST00000573169 TPTE2Q6XPS3 522 aa8.2□□□□□ -1.1
NUP88-206ENST00000573169 CLEC17AQ6ZS10 378 aa8.2□□□□□ -1.1
NUP88-206ENST00000573169 NUTM1Q86Y26 1132 aa8.2□□□□□ -1.1
NUP88-206ENST00000573169 SMC5Q8IY18 1101 aa8.2□□□□□ -1.1
NUP88-206ENST00000573169 SMC1BQ8NDV3 1235 aa8.2□□□□□ -1.1
NUP88-206ENST00000573169 C7orf43Q8WVR3 580 aa8.2□□□□□ -1.1
NUP88-206ENST00000573169 TAOK3Q9H2K8 898 aa8.2□□□□□ -1.1
NUP88-206ENST00000573169 ZBTB3Q9H5J0 574 aa8.2□□□□□ -1.1
NUP88-206ENST00000573169 COG6Q9Y2V7 657 aa8.2□□□□□ -1.1
NUP88-206ENST00000573169 ZC3H4Q9UPT8 1303 aaKnown RBP8.2□□□□□ -1.1
NUP88-206ENST00000573169 WDR90Q96KV7 1748 aa8.2□□□□□ -1.1
NUP88-206ENST00000573169 KDM3BQ7LBC6 1761 aa8.2□□□□□ -1.1
NUP88-206ENST00000573169 FER1L6Q2WGJ9 1857 aa8.19□□□□□ -1.1
NUP88-206ENST00000573169 TRAK2O60296 914 aa8.19□□□□□ -1.1
NUP88-206ENST00000573169 EVI5O60447 810 aa8.19□□□□□ -1.1
NUP88-206ENST00000573169 ANXA1P04083 346 aa8.19□□□□□ -1.1
NUP88-206ENST00000573169 NPR1P16066 1061 aa8.19□□□□□ -1.1
NUP88-206ENST00000573169 GTF2E1P29083 439 aaPredicted RBP8.19□□□□□ -1.1
NUP88-206ENST00000573169 TERF1P54274 439 aa8.19□□□□□ -1.1
NUP88-206ENST00000573169 SKOR2Q2VWA4 1001 aaPredicted RBP8.19□□□□□ -1.1
NUP88-206ENST00000573169 CCDC146Q8IYE0 955 aa8.19□□□□□ -1.1
NUP88-206ENST00000573169 ZNF710Q8N1W2 664 aa8.19□□□□□ -1.1
NUP88-206ENST00000573169 PANK1Q8TE04 598 aa8.19□□□□□ -1.1
NUP88-206ENST00000573169 PNNQ9H307 717 aaKnown RBP8.19□□□□□ -1.1
NUP88-206ENST00000573169 ZNF277Q9NRM2 450 aaPredicted RBP8.19□□□□□ -1.1
NUP88-206ENST00000573169 IL16Q14005 1332 aa8.19□□□□□ -1.1
NUP88-206ENST00000573169 LTBP3Q9NS15 1303 aa8.19□□□□□ -1.1
NUP88-206ENST00000573169 ABCC12Q96J65 1359 aa8.19□□□□□ -1.1
NUP88-206ENST00000573169 IBTKQ9P2D0 1353 aaPredicted RBP8.19□□□□□ -1.1
NUP88-206ENST00000573169 LAMB4A4D0S4 1761 aa8.18□□□□□ -1.1
NUP88-206ENST00000573169 KLRG2A4D1S0 409 aaPredicted RBP8.18□□□□□ -1.1
NUP88-206ENST00000573169 EIF5BO60841 1220 aaKnown RBP8.18□□□□□ -1.1
NUP88-206ENST00000573169 EIF2S2P20042 333 aaKnown RBP8.18□□□□□ -1.1
NUP88-206ENST00000573169 RIPK4P57078 832 aa8.18□□□□□ -1.1
NUP88-206ENST00000573169 MVPQ14764 893 aaKnown RBP8.18□□□□□ -1.1
NUP88-206ENST00000573169 CCDC93Q567U6 631 aa8.18□□□□□ -1.1
NUP88-206ENST00000573169 SUSD4Q5VX71 490 aa8.18□□□□□ -1.1
NUP88-206ENST00000573169 NECTIN2Q92692 538 aa8.18□□□□□ -1.1
NUP88-206ENST00000573169 KLRG1Q96E93 195 aa8.18□□□□□ -1.1
NUP88-206ENST00000573169 MYH16Q9H6N6 1097 aa8.18□□□□□ -1.1
NUP88-206ENST00000573169 ZSWIM6Q9HCJ5 1215 aa8.18□□□□□ -1.1
NUP88-206ENST00000573169 TSPYL4Q9UJ04 414 aa8.18□□□□□ -1.1
NUP88-206ENST00000573169 MAP3K15Q6ZN16 1313 aa8.18□□□□□ -1.1
NUP88-206ENST00000573169 UBN2Q6ZU65 1347 aa8.18□□□□□ -1.1
NUP88-206ENST00000573169 GRXCR2A6NFK2 248 aa8.17□□□□□ -1.1
NUP88-206ENST00000573169 ERVV-1B6SEH8 477 aa8.17□□□□□ -1.1
NUP88-206ENST00000573169 RLBP1P12271 317 aa8.17□□□□□ -1.1
NUP88-206ENST00000573169 TMPOP42166 694 aaKnown RBP8.17□□□□□ -1.1
NUP88-206ENST00000573169 BRPF1P55201 1214 aaPredicted RBP8.17□□□□□ -1.1
NUP88-206ENST00000573169 FKBP4Q02790 459 aaKnown RBP eCLIP8.17□□□□□ -1.1
NUP88-206ENST00000573169 NEUROD2Q15784 382 aa8.17□□□□□ -1.1
NUP88-206ENST00000573169 KRT24Q2M2I5 525 aa8.17□□□□□ -1.1
NUP88-206ENST00000573169 PROSER3Q2NL68 480 aa8.17□□□□□ -1.1
NUP88-206ENST00000573169 SOGA3Q5TF21 947 aa8.17□□□□□ -1.1
NUP88-206ENST00000573169 KIF6Q6ZMV9 814 aa8.17□□□□□ -1.1
NUP88-206ENST00000573169 ZNF428Q96B54 188 aa8.17□□□□□ -1.1
NUP88-206ENST00000573169 KRTAP3-3Q9BYR6 98 aa8.17□□□□□ -1.1
NUP88-206ENST00000573169 KRTAP3-2Q9BYR7 98 aa8.17□□□□□ -1.1
NUP88-206ENST00000573169 C22orf23Q9BZE7 217 aa8.17□□□□□ -1.1
NUP88-206ENST00000573169 PCDHGA4Q9Y5G9 962 aa8.17□□□□□ -1.1
NUP88-206ENST00000573169 ZNF541Q9H0D2 1346 aa8.17□□□□□ -1.1
NUP88-206ENST00000573169 ARFGEF2Q9Y6D5 1785 aa8.17□□□□□ -1.1
NUP88-206ENST00000573169 TPM2P07951 284 aa8.16□□□□□ -1.1
NUP88-206ENST00000573169 MLLT3P42568 568 aaPredicted RBP8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms