RNA–Protein interactions for RNA: ENST00000571249.1

CHD3-213, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 330 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-213ENST00000571249 LRIT3Q3SXY7 679 aa9.57□□□□□ -0.88
CHD3-213ENST00000571249 GRIPAP1Q4V328 841 aa9.57□□□□□ -0.88
CHD3-213ENST00000571249 ANGEL2Q5VTE6 544 aaKnown RBP9.57□□□□□ -0.88
CHD3-213ENST00000571249 GDF15Q99988 308 aa9.57□□□□□ -0.88
CHD3-213ENST00000571249 HTATIP2Q9BUP3 242 aa9.57□□□□□ -0.88
CHD3-213ENST00000571249 ABCC12Q96J65 1359 aa9.56□□□□□ -0.88
CHD3-213ENST00000571249 ALDH1A1P00352 501 aa9.56□□□□□ -0.88
CHD3-213ENST00000571249 GTF2E1P29083 439 aaPredicted RBP9.56□□□□□ -0.88
CHD3-213ENST00000571249 HOXA10P31260 410 aaPredicted RBP9.56□□□□□ -0.88
CHD3-213ENST00000571249 KIAA2012Q0VF49 1180 aa9.56□□□□□ -0.88
CHD3-213ENST00000571249 TTLL12Q14166 644 aaPredicted RBP9.56□□□□□ -0.88
CHD3-213ENST00000571249 KIF4BQ2VIQ3 1234 aa9.56□□□□□ -0.88
CHD3-213ENST00000571249 RPGRQ92834 1020 aaKnown RBP9.56□□□□□ -0.88
CHD3-213ENST00000571249 ZNF496Q96IT1 587 aaPredicted RBP9.56□□□□□ -0.88
CHD3-213ENST00000571249 RTFDC1Q9BY42 306 aaPredicted RBP9.56□□□□□ -0.88
CHD3-213ENST00000571249 VPS33BQ9H267 617 aa9.56□□□□□ -0.88
CHD3-213ENST00000571249 MUC6Q6W4X9 2439 aa9.56□□□□□ -0.88
CHD3-213ENST00000571249 SYNGAP1Q96PV0 1343 aa9.56□□□□□ -0.88
CHD3-213ENST00000571249 IRS2Q9Y4H2 1338 aa9.56□□□□□ -0.88
CHD3-213ENST00000571249 RNMTO43148 476 aaKnown RBP9.55□□□□□ -0.88
CHD3-213ENST00000571249 EVI5O60447 810 aa9.55□□□□□ -0.88
CHD3-213ENST00000571249 SP3Q02447 781 aa9.55□□□□□ -0.88
CHD3-213ENST00000571249 SCARF1Q14162 830 aa9.55□□□□□ -0.88
CHD3-213ENST00000571249 SPRYD7Q5W111 196 aa9.55□□□□□ -0.88
CHD3-213ENST00000571249 CLEC4GQ6UXB4 293 aa9.55□□□□□ -0.88
CHD3-213ENST00000571249 C3orf67Q6ZVT6 689 aa9.55□□□□□ -0.88
CHD3-213ENST00000571249 POTEDQ86YR6 584 aa9.55□□□□□ -0.88
CHD3-213ENST00000571249 SYMPKQ92797 1274 aaKnown RBP9.55□□□□□ -0.88
CHD3-213ENST00000571249 CACNA1GO43497 2377 aa9.55□□□□□ -0.88
CHD3-213ENST00000571249 BMP8BP34820 402 aa9.54□□□□□ -0.88
CHD3-213ENST00000571249 PRKG1Q13976 671 aa9.54□□□□□ -0.88
CHD3-213ENST00000571249 NPM2Q86SE8 214 aaKnown RBP9.54□□□□□ -0.88
CHD3-213ENST00000571249 ALYREFQ86V81 257 aaKnown RBP9.54□□□□□ -0.88
CHD3-213ENST00000571249 ATP6V0A2Q9Y487 856 aa9.54□□□□□ -0.88
CHD3-213ENST00000571249 POTEB2H3BUK9 544 aa9.53□□□□□ -0.88
CHD3-213ENST00000571249 HLFQ16534 295 aa9.53□□□□□ -0.88
CHD3-213ENST00000571249 MAFAQ8NHW3 353 aaPredicted RBP9.53□□□□□ -0.88
CHD3-213ENST00000571249 RBM17Q96I25 401 aaKnown RBP9.53□□□□□ -0.88
CHD3-213ENST00000571249 CRAMP1Q96RY5 1269 aa9.53□□□□□ -0.88
CHD3-213ENST00000571249 TESK2Q96S53 571 aa9.53□□□□□ -0.88
CHD3-213ENST00000571249 FZD1Q9UP38 647 aa9.53□□□□□ -0.88
CHD3-213ENST00000571249 DPP8Q6V1X1 898 aaPredicted RBP9.52□□□□□ -0.89
CHD3-213ENST00000571249 SUPT20HQ8NEM7 779 aa9.52□□□□□ -0.89
CHD3-213ENST00000571249 CARD14Q9BXL6 1004 aa9.52□□□□□ -0.89
CHD3-213ENST00000571249 DBNDD1Q9H9R9 158 aa9.52□□□□□ -0.89
CHD3-213ENST00000571249 ZMYND8Q9ULU4 1186 aaPredicted RBP9.52□□□□□ -0.89
CHD3-213ENST00000571249 KIF7Q2M1P5 1343 aa9.52□□□□□ -0.89
CHD3-213ENST00000571249 TCIRG1Q13488 830 aa9.51□□□□□ -0.89
CHD3-213ENST00000571249 TDHQ8IZJ6 230 aa9.51□□□□□ -0.89
CHD3-213ENST00000571249 PTPN18Q99952 460 aa9.51□□□□□ -0.89
CHD3-213ENST00000571249 ARHGAP39Q9C0H5 1083 aa9.51□□□□□ -0.89
CHD3-213ENST00000571249 RTL9Q8NET4 1388 aa9.5□□□□□ -0.89
CHD3-213ENST00000571249 HEG1Q9ULI3 1381 aa9.5□□□□□ -0.89
CHD3-213ENST00000571249 MANSC4A6NHS7 340 aaPredicted RBP9.5□□□□□ -0.89
CHD3-213ENST00000571249 FARP2O94887 1054 aaPredicted RBP9.5□□□□□ -0.89
CHD3-213ENST00000571249 GJA8P48165 433 aa9.5□□□□□ -0.89
CHD3-213ENST00000571249 SULT6B1Q6IMI4 303 aa9.5□□□□□ -0.89
CHD3-213ENST00000571249 TTC5Q8N0Z6 440 aa9.5□□□□□ -0.89
CHD3-213ENST00000571249 SIN3AQ96ST3 1273 aa9.5□□□□□ -0.89
CHD3-213ENST00000571249 CDX2Q99626 313 aaPredicted RBP9.5□□□□□ -0.89
CHD3-213ENST00000571249 ZNF652Q9Y2D9 606 aa9.5□□□□□ -0.89
CHD3-213ENST00000571249 USP16Q9Y5T5 823 aa9.5□□□□□ -0.89
CHD3-213ENST00000571249 KDM3BQ7LBC6 1761 aa9.5□□□□□ -0.89
CHD3-213ENST00000571249 RIMBP2O15034 1052 aa9.49□□□□□ -0.89
CHD3-213ENST00000571249 SYN1P17600 705 aa9.49□□□□□ -0.89
CHD3-213ENST00000571249 INHBEP58166 350 aa9.49□□□□□ -0.89
CHD3-213ENST00000571249 NEUROD1Q13562 356 aa9.49□□□□□ -0.89
CHD3-213ENST00000571249 DOK7Q18PE1 504 aa9.49□□□□□ -0.89
CHD3-213ENST00000571249 TEX13AQ9BXU3 409 aaPredicted RBP9.49□□□□□ -0.89
CHD3-213ENST00000571249 TMX4Q9H1E5 349 aaPredicted RBP9.49□□□□□ -0.89
CHD3-213ENST00000571249 RIC1Q4ADV7 1423 aa9.48□□□□□ -0.89
CHD3-213ENST00000571249 KCNQ3O43525 872 aa9.48□□□□□ -0.89
CHD3-213ENST00000571249 GJB1P08034 283 aa9.48□□□□□ -0.89
CHD3-213ENST00000571249 CCL5P13501 91 aa9.48□□□□□ -0.89
CHD3-213ENST00000571249 RPS12P25398 132 aaKnown RBP9.48□□□□□ -0.89
CHD3-213ENST00000571249 MAGEA10P43363 369 aaPredicted RBP9.48□□□□□ -0.89
CHD3-213ENST00000571249 TRIM26Q12899 539 aaPredicted RBP9.48□□□□□ -0.89
CHD3-213ENST00000571249 TJAP1Q5JTD0 557 aa9.48□□□□□ -0.89
CHD3-213ENST00000571249 LDLRAD1Q5T700 205 aa9.48□□□□□ -0.89
CHD3-213ENST00000571249 FAM109BQ6ICB4 259 aaPredicted RBP9.48□□□□□ -0.89
CHD3-213ENST00000571249 CLMNQ96JQ2 1002 aa9.48□□□□□ -0.89
CHD3-213ENST00000571249 KIF20BQ96Q89 1820 aa9.47□□□□□ -0.89
CHD3-213ENST00000571249 ZNF790Q6PG37 636 aa9.47□□□□□ -0.89
CHD3-213ENST00000571249 SP8Q8IXZ3 490 aa9.47□□□□□ -0.89
CHD3-213ENST00000571249 NKX2-3Q8TAU0 364 aa9.47□□□□□ -0.89
CHD3-213ENST00000571249 SLC10A4Q96EP9 437 aa9.47□□□□□ -0.89
CHD3-213ENST00000571249 ABCC4O15439 1325 aa9.47□□□□□ -0.89
CHD3-213ENST00000571249 UBR2Q8IWV8 1755 aa9.47□□□□□ -0.89
CHD3-213ENST00000571249 NBPF26B4DH59 902 aa9.46□□□□□ -0.9
CHD3-213ENST00000571249 GJA5P36382 358 aa9.46□□□□□ -0.9
CHD3-213ENST00000571249 ZNF280AP59817 542 aaPredicted RBP9.46□□□□□ -0.9
CHD3-213ENST00000571249 WASHC4Q2M389 1173 aa9.46□□□□□ -0.9
CHD3-213ENST00000571249 NBPF9Q3BBW0 867 aa9.46□□□□□ -0.9
CHD3-213ENST00000571249 NBPF10Q6P3W6 841 aaKnown RBP9.46□□□□□ -0.9
CHD3-213ENST00000571249 C7orf61Q8IZ16 206 aa9.46□□□□□ -0.9
CHD3-213ENST00000571249 PLCD3Q8N3E9 789 aa9.46□□□□□ -0.9
CHD3-213ENST00000571249 U2AF1L4Q8WU68 220 aaKnown RBP9.46□□□□□ -0.9
CHD3-213ENST00000571249 WNK4Q96J92 1243 aa9.46□□□□□ -0.9
CHD3-213ENST00000571249 UBE2OQ9C0C9 1292 aaKnown RBP9.46□□□□□ -0.9
CHD3-213ENST00000571249 RNF208Q9H0X6 261 aa9.46□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms