RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 ANKIB1Q9P2G1 1089 aa14.57□□□□□ -0.08
VPS53-207ENST00000570510 POLLQ9UGP5 575 aa14.57□□□□□ -0.08
VPS53-207ENST00000570510 FXR1P51114 621 aaKnown RBP eCLIP14.56□□□□□ -0.08
VPS53-207ENST00000570510 GPSM2P81274 684 aa14.56□□□□□ -0.08
VPS53-207ENST00000570510 MOB2Q70IA6 237 aa14.56□□□□□ -0.08
VPS53-207ENST00000570510 AGBL3Q8NEM8 1001 aa14.56□□□□□ -0.08
VPS53-207ENST00000570510 ZNF428Q96B54 188 aa14.56□□□□□ -0.08
VPS53-207ENST00000570510 TRIM17Q9Y577 477 aa14.56□□□□□ -0.08
VPS53-207ENST00000570510 RTL9Q8NET4 1388 aa14.56□□□□□ -0.08
VPS53-207ENST00000570510 POLR2AP24928 1970 aaKnown RBP14.56□□□□□ -0.08
VPS53-207ENST00000570510 ALDH1A1P00352 501 aa14.55□□□□□ -0.08
VPS53-207ENST00000570510 USP17L8P0C7I0 530 aa14.55□□□□□ -0.08
VPS53-207ENST00000570510 COPS6Q7L5N1 327 aa14.55□□□□□ -0.08
VPS53-207ENST00000570510 MYOZ2Q9NPC6 264 aa14.55□□□□□ -0.08
VPS53-207ENST00000570510 TSPYL4Q9UJ04 414 aa14.55□□□□□ -0.08
VPS53-207ENST00000570510 POTEFA5A3E0 1075 aa14.54□□□□□ -0.08
VPS53-207ENST00000570510 ANXA1P04083 346 aa14.54□□□□□ -0.08
VPS53-207ENST00000570510 RSBN1LQ6PCB5 846 aaPredicted RBP14.54□□□□□ -0.08
VPS53-207ENST00000570510 TBC1D16Q8TBP0 767 aa14.54□□□□□ -0.08
VPS53-207ENST00000570510 CELF1Q92879 486 aaKnown RBP14.54□□□□□ -0.08
VPS53-207ENST00000570510 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.54□□□□□ -0.08
VPS53-207ENST00000570510 PITPNM2Q9BZ72 1349 aa14.54□□□□□ -0.08
VPS53-207ENST00000570510 UFL1O94874 794 aa14.53□□□□□ -0.08
VPS53-207ENST00000570510 ZNF280AP59817 542 aaPredicted RBP14.53□□□□□ -0.08
VPS53-207ENST00000570510 PRAMEF18Q5VWM3 479 aa14.53□□□□□ -0.08
VPS53-207ENST00000570510 ARMC9Q7Z3E5 817 aa14.53□□□□□ -0.08
VPS53-207ENST00000570510 XAGE3Q8WTP9 111 aa14.53□□□□□ -0.08
VPS53-207ENST00000570510 NECTIN2Q92692 538 aa14.53□□□□□ -0.08
VPS53-207ENST00000570510 TMEM106CQ9BVX2 250 aa14.53□□□□□ -0.08
VPS53-207ENST00000570510 SCAF8Q9UPN6 1271 aaKnown RBP14.53□□□□□ -0.08
VPS53-207ENST00000570510 PAPPA2Q9BXP8 1791 aa14.52□□□□□ -0.08
VPS53-207ENST00000570510 RPS8P62241 208 aaKnown RBP14.52□□□□□ -0.09
VPS53-207ENST00000570510 PRKG1Q13976 671 aa14.52□□□□□ -0.09
VPS53-207ENST00000570510 OGFOD1Q8N543 542 aa14.52□□□□□ -0.09
VPS53-207ENST00000570510 GGA1Q9UJY5 639 aa14.52□□□□□ -0.09
VPS53-207ENST00000570510 PDIA6Q15084 440 aa14.51□□□□□ -0.09
VPS53-207ENST00000570510 PROSER3Q2NL68 480 aa14.51□□□□□ -0.09
VPS53-207ENST00000570510 RTL5Q5HYW3 569 aaPredicted RBP14.51□□□□□ -0.09
VPS53-207ENST00000570510 FAM89AQ96GI7 184 aa14.51□□□□□ -0.09
VPS53-207ENST00000570510 DUOX1Q9NRD9 1551 aa14.51□□□□□ -0.09
VPS53-207ENST00000570510 MAPK8IP3Q9UPT6 1336 aa14.5□□□□□ -0.09
VPS53-207ENST00000570510 INHBEP58166 350 aa14.5□□□□□ -0.09
VPS53-207ENST00000570510 SF3B3Q15393 1217 aaKnown RBP14.5□□□□□ -0.09
VPS53-207ENST00000570510 OTOP1Q7RTM1 612 aa14.5□□□□□ -0.09
VPS53-207ENST00000570510 ERO1AQ96HE7 468 aa14.5□□□□□ -0.09
VPS53-207ENST00000570510 CFHR5Q9BXR6 569 aa14.5□□□□□ -0.09
VPS53-207ENST00000570510 PNNQ9H307 717 aaKnown RBP14.5□□□□□ -0.09
VPS53-207ENST00000570510 R3HDMLQ9H3Y0 253 aa14.5□□□□□ -0.09
VPS53-207ENST00000570510 COLQQ9Y215 455 aaPredicted RBP14.5□□□□□ -0.09
VPS53-207ENST00000570510 ANKRD36CQ5JPF3 1778 aa14.5□□□□□ -0.09
VPS53-207ENST00000570510 USP17L3A6NCW0 530 aa14.49□□□□□ -0.09
VPS53-207ENST00000570510 USP17L4A6NCW7 530 aa14.49□□□□□ -0.09
VPS53-207ENST00000570510 HSP90B1P14625 803 aaKnown RBP14.49□□□□□ -0.09
VPS53-207ENST00000570510 EN2P19622 333 aaPredicted RBP14.49□□□□□ -0.09
VPS53-207ENST00000570510 NFE2L2Q16236 605 aa14.49□□□□□ -0.09
VPS53-207ENST00000570510 USP17L1Q7RTZ2 530 aa14.49□□□□□ -0.09
VPS53-207ENST00000570510 FBXW7Q969H0 707 aa14.49□□□□□ -0.09
VPS53-207ENST00000570510 SLC10A4Q96EP9 437 aa14.49□□□□□ -0.09
VPS53-207ENST00000570510 MANSC4A6NHS7 340 aaPredicted RBP14.48□□□□□ -0.09
VPS53-207ENST00000570510 PPP2R1AP30153 589 aa14.48□□□□□ -0.09
VPS53-207ENST00000570510 PTPN12Q05209 780 aaKnown RBP14.48□□□□□ -0.09
VPS53-207ENST00000570510 NBPF9Q3BBW0 867 aa14.48□□□□□ -0.09
VPS53-207ENST00000570510 OTUD7BQ6GQQ9 843 aa14.48□□□□□ -0.09
VPS53-207ENST00000570510 LRP10Q7Z4F1 713 aa14.48□□□□□ -0.09
VPS53-207ENST00000570510 LAMB2P55268 1798 aa14.47□□□□□ -0.09
VPS53-207ENST00000570510 ATP5J2-PTCD1G3V325 749 aa14.47□□□□□ -0.09
VPS53-207ENST00000570510 DLL1O00548 723 aa14.47□□□□□ -0.09
VPS53-207ENST00000570510 IRS4O14654 1257 aaPredicted RBP14.47□□□□□ -0.09
VPS53-207ENST00000570510 SPRYD7Q5W111 196 aa14.47□□□□□ -0.09
VPS53-207ENST00000570510 NBPF11Q86T75 865 aa14.47□□□□□ -0.09
VPS53-207ENST00000570510 EFCC1Q9HA90 598 aa14.47□□□□□ -0.09
VPS53-207ENST00000570510 PODXL2Q9NZ53 605 aa14.47□□□□□ -0.09
VPS53-207ENST00000570510 ANGEL1Q9UNK9 670 aaKnown RBP14.47□□□□□ -0.09
VPS53-207ENST00000570510 PTPN22Q9Y2R2 807 aa14.47□□□□□ -0.09
VPS53-207ENST00000570510 TAF1P21675 1872 aa14.46□□□□□ -0.09
VPS53-207ENST00000570510 SLC4A8Q2Y0W8 1093 aa14.46□□□□□ -0.09
VPS53-207ENST00000570510 ANKRD13DQ6ZTN6 518 aa14.46□□□□□ -0.09
VPS53-207ENST00000570510 PODNQ7Z5L7 613 aa14.46□□□□□ -0.09
VPS53-207ENST00000570510 IFNL1Q8IU54 200 aa14.46□□□□□ -0.09
VPS53-207ENST00000570510 SLC17A8Q8NDX2 589 aa14.46□□□□□ -0.09
VPS53-207ENST00000570510 KDM3BQ7LBC6 1761 aa14.46□□□□□ -0.09
VPS53-207ENST00000570510 DDX60Q8IY21 1712 aaKnown RBP14.46□□□□□ -0.1
VPS53-207ENST00000570510 MKI67P46013 3256 aaKnown RBP14.46□□□□□ -0.1
VPS53-207ENST00000570510 LRRC37AA6NMS7 1700 aa14.45□□□□□ -0.1
VPS53-207ENST00000570510 ARHGEF6Q15052 776 aa14.45□□□□□ -0.1
VPS53-207ENST00000570510 PLBD2Q8NHP8 589 aa14.45□□□□□ -0.1
VPS53-207ENST00000570510 CD99L2Q8TCZ2 262 aa14.45□□□□□ -0.1
VPS53-207ENST00000570510 CCDC152Q4G0S7 254 aa14.44□□□□□ -0.1
VPS53-207ENST00000570510 APOBEC3FQ8IUX4 373 aaKnown RBP14.44□□□□□ -0.1
VPS53-207ENST00000570510 GMLQ99445 158 aa14.44□□□□□ -0.1
VPS53-207ENST00000570510 XDHP47989 1333 aa14.43□□□□□ -0.1
VPS53-207ENST00000570510 WNT10BO00744 389 aa14.43□□□□□ -0.1
VPS53-207ENST00000570510 PPP1R12BO60237 982 aaPredicted RBP14.43□□□□□ -0.1
VPS53-207ENST00000570510 ATP2B4P23634 1241 aa14.43□□□□□ -0.1
VPS53-207ENST00000570510 SLC9C1Q4G0N8 1177 aa14.43□□□□□ -0.1
VPS53-207ENST00000570510 ARMC5Q96C12 935 aa14.43□□□□□ -0.1
VPS53-207ENST00000570510 SEC31BQ9NQW1 1179 aa14.43□□□□□ -0.1
VPS53-207ENST00000570510 BABAM1Q9NWV8 329 aa14.43□□□□□ -0.1
VPS53-207ENST00000570510 MYO3BQ8WXR4 1341 aa14.42□□□□□ -0.1
VPS53-207ENST00000570510 ZNF609O15014 1411 aa14.42□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms