RNA–Protein interactions for RNA: ENST00000568782.1

UBR1-207, Transcript of ubiquitin protein ligase E3 component n-recognin 1, human

TSL 3

Gene UBR1, Length 615 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR1-207	ENST00000568782	USP50	Q70EL3	339 aa	Predicted RBP	13.11	□□□□□ -0.31
UBR1-207	ENST00000568782	TBC1D16	Q8TBP0	767 aa		13.11	□□□□□ -0.31
UBR1-207	ENST00000568782	BSDC1	Q9NW68	430 aa	Predicted RBP	13.11	□□□□□ -0.31
UBR1-207	ENST00000568782	POLL	Q9UGP5	575 aa		13.11	□□□□□ -0.31
UBR1-207	ENST00000568782	RTL9	Q8NET4	1388 aa		13.1	□□□□□ -0.31
UBR1-207	ENST00000568782	GRM8	O00222	908 aa		13.1	□□□□□ -0.31
UBR1-207	ENST00000568782	ECE2	O60344	883 aa		13.1	□□□□□ -0.31
UBR1-207	ENST00000568782	ITGA6	P23229	1130 aa		13.1	□□□□□ -0.31
UBR1-207	ENST00000568782	KCNJ4	P48050	445 aa		13.1	□□□□□ -0.31
UBR1-207	ENST00000568782	CCDC57	Q2TAC2	916 aa		13.1	□□□□□ -0.31
UBR1-207	ENST00000568782	ALDH1L2	Q3SY69	923 aa		13.1	□□□□□ -0.31
UBR1-207	ENST00000568782	ANKRD2	Q9GZV1	360 aa		13.1	□□□□□ -0.31
UBR1-207	ENST00000568782	DBNDD1	Q9H9R9	158 aa		13.1	□□□□□ -0.31
UBR1-207	ENST00000568782	ADARB2	Q9NS39	739 aa	Known RBP	13.1	□□□□□ -0.31
UBR1-207	ENST00000568782	DOK7	Q18PE1	504 aa		13.09	□□□□□ -0.31
UBR1-207	ENST00000568782	SLC51A	Q86UW1	340 aa		13.09	□□□□□ -0.31
UBR1-207	ENST00000568782	SMC4	Q9NTJ3	1288 aa		13.09	□□□□□ -0.31
UBR1-207	ENST00000568782	GPRC5D	Q9NZD1	345 aa		13.09	□□□□□ -0.31
UBR1-207	ENST00000568782	POTEI	P0CG38	1075 aa		13.08	□□□□□ -0.32
UBR1-207	ENST00000568782	POTEJ	P0CG39	1038 aa		13.08	□□□□□ -0.32
UBR1-207	ENST00000568782	RPS12	P25398	132 aa	Known RBP	13.08	□□□□□ -0.32
UBR1-207	ENST00000568782	EPS15	P42566	896 aa		13.08	□□□□□ -0.32
UBR1-207	ENST00000568782	GMPS	P49915	693 aa	Predicted RBP	13.08	□□□□□ -0.32
UBR1-207	ENST00000568782	SCNN1D	P51172	638 aa		13.08	□□□□□ -0.32
UBR1-207	ENST00000568782	CNTROB	Q8N137	903 aa		13.08	□□□□□ -0.32
UBR1-207	ENST00000568782	MRPL50	Q8N5N7	158 aa	Known RBP	13.08	□□□□□ -0.32
UBR1-207	ENST00000568782	CDCA7L	Q96GN5	454 aa		13.08	□□□□□ -0.32
UBR1-207	ENST00000568782	MINPP1	Q9UNW1	487 aa		13.08	□□□□□ -0.32
UBR1-207	ENST00000568782	LEMD3	Q9Y2U8	911 aa		13.08	□□□□□ -0.32
UBR1-207	ENST00000568782	COL4A5	P29400	1685 aa		13.08	□□□□□ -0.32
UBR1-207	ENST00000568782	CSF1R	P07333	972 aa		13.07	□□□□□ -0.32
UBR1-207	ENST00000568782	CCT4	P50991	539 aa	Known RBP	13.07	□□□□□ -0.32
UBR1-207	ENST00000568782	FAM161A	Q3B820	660 aa		13.07	□□□□□ -0.32
UBR1-207	ENST00000568782	PODN	Q7Z5L7	613 aa		13.07	□□□□□ -0.32
UBR1-207	ENST00000568782	SSH1	Q8WYL5	1049 aa		13.07	□□□□□ -0.32
UBR1-207	ENST00000568782	DPF2	Q92785	391 aa		13.07	□□□□□ -0.32
UBR1-207	ENST00000568782	KLRG1	Q96E93	195 aa		13.07	□□□□□ -0.32
UBR1-207	ENST00000568782	CREBZF	Q9NS37	354 aa		13.07	□□□□□ -0.32
UBR1-207	ENST00000568782	CNOT7	Q9UIV1	285 aa	Known RBP	13.07	□□□□□ -0.32
UBR1-207	ENST00000568782	HDAC5	Q9UQL6	1122 aa		13.07	□□□□□ -0.32
UBR1-207	ENST00000568782	TMEM88B	A6NKF7	163 aa		13.06	□□□□□ -0.32
UBR1-207	ENST00000568782	PSMD14	O00487	310 aa		13.06	□□□□□ -0.32
UBR1-207	ENST00000568782	CASP7	P55210	303 aa		13.06	□□□□□ -0.32
UBR1-207	ENST00000568782	MAP1S	Q66K74	1059 aa	Predicted RBP	13.06	□□□□□ -0.32
UBR1-207	ENST00000568782	LMBR1L	Q6UX01	489 aa		13.06	□□□□□ -0.32
UBR1-207	ENST00000568782	MIER1	Q8N108	512 aa		13.06	□□□□□ -0.32
UBR1-207	ENST00000568782	DUOX1	Q9NRD9	1551 aa		13.06	□□□□□ -0.32
UBR1-207	ENST00000568782	CEP350	Q5VT06	3117 aa		13.05	□□□□□ -0.32
UBR1-207	ENST00000568782	YDJC	A8MPS7	323 aa		13.05	□□□□□ -0.32
UBR1-207	ENST00000568782	HTRA3	P83110	453 aa		13.05	□□□□□ -0.32
UBR1-207	ENST00000568782	LDHAL6A	Q6ZMR3	332 aa		13.05	□□□□□ -0.32
UBR1-207	ENST00000568782	ZC3H15	Q8WU90	426 aa	Known RBP	13.05	□□□□□ -0.32
UBR1-207	ENST00000568782	GPR101	Q96P66	508 aa	Predicted RBP	13.05	□□□□□ -0.32
UBR1-207	ENST00000568782	CNNM1	Q9NRU3	951 aa		13.05	□□□□□ -0.32
UBR1-207	ENST00000568782	LTBP1	Q14766	1721 aa		13.05	□□□□□ -0.32
UBR1-207	ENST00000568782	TRPM7	Q96QT4	1865 aa		13.04	□□□□□ -0.32
UBR1-207	ENST00000568782	USP17L3	A6NCW0	530 aa		13.04	□□□□□ -0.32
UBR1-207	ENST00000568782	USP17L4	A6NCW7	530 aa		13.04	□□□□□ -0.32
UBR1-207	ENST00000568782	FOXO4	P98177	505 aa		13.04	□□□□□ -0.32
UBR1-207	ENST00000568782	HNRNPU	Q00839	825 aa	Known RBP eCLIP	13.04	□□□□□ -0.32
UBR1-207	ENST00000568782	USP17L1	Q7RTZ2	530 aa		13.04	□□□□□ -0.32
UBR1-207	ENST00000568782	MICALL2	Q8IY33	904 aa		13.04	□□□□□ -0.32
UBR1-207	ENST00000568782	TRMT2A	Q8IZ69	625 aa	Known RBP	13.04	□□□□□ -0.32
UBR1-207	ENST00000568782	DNAJC5G	Q8N7S2	189 aa		13.04	□□□□□ -0.32
UBR1-207	ENST00000568782	FBXW7	Q969H0	707 aa		13.04	□□□□□ -0.32
UBR1-207	ENST00000568782	API5	Q9BZZ5	524 aa	Known RBP	13.04	□□□□□ -0.32
UBR1-207	ENST00000568782	ZBTB12	Q9Y330	459 aa	Predicted RBP	13.04	□□□□□ -0.32
UBR1-207	ENST00000568782	ZNF804B	A4D1E1	1349 aa		13.04	□□□□□ -0.32
UBR1-207	ENST00000568782	MED23	Q9ULK4	1368 aa		13.04	□□□□□ -0.32
UBR1-207	ENST00000568782	IPO8	O15397	1037 aa	Known RBP	13.03	□□□□□ -0.32
UBR1-207	ENST00000568782	ITGBL1	O95965	494 aa	Predicted RBP	13.03	□□□□□ -0.32
UBR1-207	ENST00000568782	VIL1	P09327	827 aa	Known RBP	13.03	□□□□□ -0.32
UBR1-207	ENST00000568782	CHRND	Q07001	517 aa		13.03	□□□□□ -0.32
UBR1-207	ENST00000568782	RBM26	Q5T8P6	1007 aa	Known RBP	13.03	□□□□□ -0.32
UBR1-207	ENST00000568782	OGFOD1	Q8N543	542 aa		13.03	□□□□□ -0.32
UBR1-207	ENST00000568782	AGBL3	Q8NEM8	1001 aa		13.03	□□□□□ -0.32
UBR1-207	ENST00000568782	COA1	Q9GZY4	146 aa		13.03	□□□□□ -0.32
UBR1-207	ENST00000568782	ABT1	Q9ULW3	272 aa	Known RBP	13.03	□□□□□ -0.32
UBR1-207	ENST00000568782	PSME4	Q14997	1843 aa		13.02	□□□□□ -0.32
UBR1-207	ENST00000568782	POLR2A	P24928	1970 aa	Known RBP	13.02	□□□□□ -0.32
UBR1-207	ENST00000568782	PLIN1	O60240	522 aa		13.02	□□□□□ -0.33
UBR1-207	ENST00000568782	CDC37L1	Q7L3B6	337 aa		13.02	□□□□□ -0.33
UBR1-207	ENST00000568782	DCPS	Q96C86	337 aa	Known RBP	13.02	□□□□□ -0.33
UBR1-207	ENST00000568782	KIF16B	Q96L93	1317 aa		13.02	□□□□□ -0.33
UBR1-207	ENST00000568782	PASK	Q96RG2	1323 aa		13.02	□□□□□ -0.33
UBR1-207	ENST00000568782	COL4A1	P02462	1669 aa		13.02	□□□□□ -0.33
UBR1-207	ENST00000568782	ADAMTSL1	Q8N6G6	1762 aa		13.02	□□□□□ -0.33
UBR1-207	ENST00000568782	NBPF7	P0C2Y1	421 aa	Predicted RBP	13.01	□□□□□ -0.33
UBR1-207	ENST00000568782	MMP14	P50281	582 aa		13.01	□□□□□ -0.33
UBR1-207	ENST00000568782	RSBN1L	Q6PCB5	846 aa	Predicted RBP	13.01	□□□□□ -0.33
UBR1-207	ENST00000568782	ZNF804A	Q7Z570	1209 aa		13.01	□□□□□ -0.33
UBR1-207	ENST00000568782	NOB1	Q9ULX3	412 aa	Known RBP	13.01	□□□□□ -0.33
UBR1-207	ENST00000568782	MYO3B	Q8WXR4	1341 aa		13.01	□□□□□ -0.33
UBR1-207	ENST00000568782	SCN9A	Q15858	1988 aa		13.01	□□□□□ -0.33
UBR1-207	ENST00000568782	UTY	O14607	1347 aa		13	□□□□□ -0.33
UBR1-207	ENST00000568782	USP17L8	P0C7I0	530 aa		13	□□□□□ -0.33
UBR1-207	ENST00000568782	DEFB115	Q30KQ5	88 aa		13	□□□□□ -0.33
UBR1-207	ENST00000568782	TBC1D10B	Q4KMP7	808 aa	Predicted RBP	13	□□□□□ -0.33
UBR1-207	ENST00000568782	TTLL5	Q6EMB2	1281 aa		13	□□□□□ -0.33
UBR1-207	ENST00000568782	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	13	□□□□□ -0.33

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