RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 CCDC30Q5VVM6 783 aa19.27■□□□□ 0.68
CLN3-236ENST00000568558 CDC37L1Q7L3B6 337 aa19.27■□□□□ 0.68
CLN3-236ENST00000568558 METTL22Q9BUU2 404 aaPredicted RBP19.27■□□□□ 0.68
CLN3-236ENST00000568558 CWC25Q9NXE8 425 aaPredicted RBP19.27■□□□□ 0.68
CLN3-236ENST00000568558 PODXL2Q9NZ53 605 aa19.27■□□□□ 0.68
CLN3-236ENST00000568558 CACNA1FO60840 1977 aa19.26■□□□□ 0.67
CLN3-236ENST00000568558 PDE8AO60658 829 aa19.26■□□□□ 0.67
CLN3-236ENST00000568558 DDX58O95786 925 aaKnown RBP19.26■□□□□ 0.67
CLN3-236ENST00000568558 DOK7Q18PE1 504 aa19.26■□□□□ 0.67
CLN3-236ENST00000568558 CCDC152Q4G0S7 254 aa19.26■□□□□ 0.67
CLN3-236ENST00000568558 SAMD7Q7Z3H4 446 aa19.26■□□□□ 0.67
CLN3-236ENST00000568558 HHIPL1Q96JK4 782 aa19.26■□□□□ 0.67
CLN3-236ENST00000568558 CHMP4AQ9BY43 222 aa19.26■□□□□ 0.67
CLN3-236ENST00000568558 KCNQ5Q9NR82 932 aa19.26■□□□□ 0.67
CLN3-236ENST00000568558 RPS12P25398 132 aaKnown RBP19.25■□□□□ 0.67
CLN3-236ENST00000568558 TSPYL6Q8N831 410 aa19.25■□□□□ 0.67
CLN3-236ENST00000568558 JARID2Q92833 1246 aaPredicted RBP19.25■□□□□ 0.67
CLN3-236ENST00000568558 ZNF408Q9H9D4 720 aa19.25■□□□□ 0.67
CLN3-236ENST00000568558 ZNF646O15015 1829 aaPredicted RBP19.25■□□□□ 0.67
CLN3-236ENST00000568558 AOC2O75106 756 aa19.24■□□□□ 0.67
CLN3-236ENST00000568558 UFL1O94874 794 aa19.24■□□□□ 0.67
CLN3-236ENST00000568558 EGFRP00533 1210 aa19.24■□□□□ 0.67
CLN3-236ENST00000568558 MAP2K2P36507 400 aa19.24■□□□□ 0.67
CLN3-236ENST00000568558 TBC1D10BQ4KMP7 808 aaPredicted RBP19.24■□□□□ 0.67
CLN3-236ENST00000568558 BEGAINQ9BUH8 593 aa19.24■□□□□ 0.67
CLN3-236ENST00000568558 ZC3H12CQ9C0D7 883 aaKnown RBP19.24■□□□□ 0.67
CLN3-236ENST00000568558 MAP3K2Q9Y2U5 619 aa19.24■□□□□ 0.67
CLN3-236ENST00000568558 CCDC184Q52MB2 194 aa19.23■□□□□ 0.67
CLN3-236ENST00000568558 USP48Q86UV5 1035 aa19.23■□□□□ 0.67
CLN3-236ENST00000568558 TSR2Q969E8 191 aaKnown RBP19.23■□□□□ 0.67
CLN3-236ENST00000568558 CCDC85AQ96PX6 553 aaPredicted RBP19.23■□□□□ 0.67
CLN3-236ENST00000568558 ANKIB1Q9P2G1 1089 aa19.23■□□□□ 0.67
CLN3-236ENST00000568558 GGA1Q9UJY5 639 aa19.23■□□□□ 0.67
CLN3-236ENST00000568558 KSR2Q6VAB6 950 aa19.22■□□□□ 0.67
CLN3-236ENST00000568558 ZNF609O15014 1411 aa19.22■□□□□ 0.67
CLN3-236ENST00000568558 PI4KAP2A4QPH2 592 aa19.21■□□□□ 0.67
CLN3-236ENST00000568558 IGKV5-2P06315 115 aa19.21■□□□□ 0.67
CLN3-236ENST00000568558 VIL1P09327 827 aaKnown RBP19.21■□□□□ 0.67
CLN3-236ENST00000568558 CCDC27Q2M243 656 aa19.21■□□□□ 0.67
CLN3-236ENST00000568558 PI4KAP1Q8N8J0 262 aa19.21■□□□□ 0.67
CLN3-236ENST00000568558 XDHP47989 1333 aa19.21■□□□□ 0.67
CLN3-236ENST00000568558 CASP8AP2Q9UKL3 1982 aa19.21■□□□□ 0.67
CLN3-236ENST00000568558 RBM26Q5T8P6 1007 aaKnown RBP19.2■□□□□ 0.66
CLN3-236ENST00000568558 DLK2Q6UY11 383 aa19.2■□□□□ 0.66
CLN3-236ENST00000568558 KRT26Q7Z3Y9 468 aa19.2■□□□□ 0.66
CLN3-236ENST00000568558 ANKRD18AQ8IVF6 992 aa19.2■□□□□ 0.66
CLN3-236ENST00000568558 STK31Q9BXU1 1019 aa19.2■□□□□ 0.66
CLN3-236ENST00000568558 G3V3G9 751 aa19.19■□□□□ 0.66
CLN3-236ENST00000568558 CTSWP56202 376 aa19.19■□□□□ 0.66
CLN3-236ENST00000568558 KIF4BQ2VIQ3 1234 aa19.19■□□□□ 0.66
CLN3-236ENST00000568558 DCAF8Q5TAQ9 597 aa19.19■□□□□ 0.66
CLN3-236ENST00000568558 WWC1Q8IX03 1113 aa19.19■□□□□ 0.66
CLN3-236ENST00000568558 ADM5C9JUS6 153 aa19.18■□□□□ 0.66
CLN3-236ENST00000568558 BRPF1P55201 1214 aaPredicted RBP19.18■□□□□ 0.66
CLN3-236ENST00000568558 HUNKP57058 714 aa19.18■□□□□ 0.66
CLN3-236ENST00000568558 NEXNQ0ZGT2 675 aa19.18■□□□□ 0.66
CLN3-236ENST00000568558 TWISTNBQ3B726 338 aaPredicted RBP19.18■□□□□ 0.66
CLN3-236ENST00000568558 DCPSQ96C86 337 aaKnown RBP19.18■□□□□ 0.66
CLN3-236ENST00000568558 CDC5LQ99459 802 aaKnown RBP19.18■□□□□ 0.66
CLN3-236ENST00000568558 TSKSQ9UJT2 592 aa19.18■□□□□ 0.66
CLN3-236ENST00000568558 AKAP11Q9UKA4 1901 aa19.17■□□□□ 0.66
CLN3-236ENST00000568558 CA12O43570 354 aa19.17■□□□□ 0.66
CLN3-236ENST00000568558 ATP2B4P23634 1241 aa19.17■□□□□ 0.66
CLN3-236ENST00000568558 CWF19L2Q2TBE0 894 aaKnown RBP19.17■□□□□ 0.66
CLN3-236ENST00000568558 RSBN1LQ6PCB5 846 aaPredicted RBP19.17■□□□□ 0.66
CLN3-236ENST00000568558 G2E3Q7L622 706 aa19.17■□□□□ 0.66
CLN3-236ENST00000568558 AGBL3Q8NEM8 1001 aa19.17■□□□□ 0.66
CLN3-236ENST00000568558 TTLL11Q8NHH1 800 aa19.17■□□□□ 0.66
CLN3-236ENST00000568558 ABHD8Q96I13 439 aa19.17■□□□□ 0.66
CLN3-236ENST00000568558 A0A1B0GUL6 1792 aa19.16■□□□□ 0.66
CLN3-236ENST00000568558 NEURL1BA8MQ27 555 aa19.16■□□□□ 0.66
CLN3-236ENST00000568558 NOGQ13253 232 aa19.16■□□□□ 0.66
CLN3-236ENST00000568558 GREM2Q9H772 168 aa19.16■□□□□ 0.66
CLN3-236ENST00000568558 GBA2Q9HCG7 927 aaPredicted RBP19.16■□□□□ 0.66
CLN3-236ENST00000568558 GGA3Q9NZ52 723 aa19.16■□□□□ 0.66
CLN3-236ENST00000568558 IL16Q14005 1332 aa19.16■□□□□ 0.66
CLN3-236ENST00000568558 MED23Q9ULK4 1368 aa19.16■□□□□ 0.66
CLN3-236ENST00000568558 ZNF280AP59817 542 aaPredicted RBP19.15■□□□□ 0.66
CLN3-236ENST00000568558 ASTN2O75129 1339 aaPredicted RBP19.15■□□□□ 0.66
CLN3-236ENST00000568558 SLC4A2P04920 1241 aa19.14■□□□□ 0.65
CLN3-236ENST00000568558 NCBP3Q53F19 620 aaKnown RBP19.14■□□□□ 0.65
CLN3-236ENST00000568558 RGMBQ6NW40 437 aa19.14■□□□□ 0.65
CLN3-236ENST00000568558 PODNQ7Z5L7 613 aa19.14■□□□□ 0.65
CLN3-236ENST00000568558 SULF1Q8IWU6 871 aa19.14■□□□□ 0.65
CLN3-236ENST00000568558 C2orf69Q8N8R5 385 aa19.14■□□□□ 0.65
CLN3-236ENST00000568558 ZIC5Q96T25 663 aa19.14■□□□□ 0.65
CLN3-236ENST00000568558 GMLQ99445 158 aa19.14■□□□□ 0.65
CLN3-236ENST00000568558 BSDC1Q9NW68 430 aaPredicted RBP19.14■□□□□ 0.65
CLN3-236ENST00000568558 MINPP1Q9UNW1 487 aa19.14■□□□□ 0.65
CLN3-236ENST00000568558 WTIPA6NIX2 430 aaPredicted RBP19.13■□□□□ 0.65
CLN3-236ENST00000568558 H7C1W4 665 aa19.13■□□□□ 0.65
CLN3-236ENST00000568558 UBE3BQ7Z3V4 1068 aa19.13■□□□□ 0.65
CLN3-236ENST00000568558 PAPPA2Q9BXP8 1791 aa19.12■□□□□ 0.65
CLN3-236ENST00000568558 USP17L3A6NCW0 530 aa19.12■□□□□ 0.65
CLN3-236ENST00000568558 USP17L4A6NCW7 530 aa19.12■□□□□ 0.65
CLN3-236ENST00000568558 FAM155AB1AL88 458 aaPredicted RBP19.12■□□□□ 0.65
CLN3-236ENST00000568558 FLIIQ13045 1269 aa19.12■□□□□ 0.65
CLN3-236ENST00000568558 SCARF1Q14162 830 aa19.12■□□□□ 0.65
CLN3-236ENST00000568558 USP17L1Q7RTZ2 530 aa19.12■□□□□ 0.65
CLN3-236ENST00000568558 CDCA5Q96FF9 252 aa19.12■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms