RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 NSUN5Q96P11 429 aaKnown RBP5.8□□□□□ -1.48
VPS35-207ENST00000568191 SRA1Q9HD15 236 aaKnown RBP5.8□□□□□ -1.48
VPS35-207ENST00000568191 J3QW42 95 aa5.79□□□□□ -1.48
VPS35-207ENST00000568191 SMNDC1O75940 238 aaKnown RBP eCLIP5.79□□□□□ -1.48
VPS35-207ENST00000568191 PDE4CQ08493 712 aa5.79□□□□□ -1.48
VPS35-207ENST00000568191 NOM1Q5C9Z4 860 aaKnown RBP5.79□□□□□ -1.48
VPS35-207ENST00000568191 GDF6Q6KF10 455 aaPredicted RBP5.79□□□□□ -1.48
VPS35-207ENST00000568191 PDE12Q6L8Q7 609 aaKnown RBP5.79□□□□□ -1.48
VPS35-207ENST00000568191 IGF2-ASQ6U949 168 aa5.79□□□□□ -1.48
VPS35-207ENST00000568191 FBXO11Q86XK2 927 aa5.79□□□□□ -1.48
VPS35-207ENST00000568191 OR13H1Q8NG92 308 aa5.79□□□□□ -1.48
VPS35-207ENST00000568191 HELQQ8TDG4 1101 aa5.79□□□□□ -1.48
VPS35-207ENST00000568191 SEMA6BQ9H3T3 888 aa5.79□□□□□ -1.48
VPS35-207ENST00000568191 FAM117BQ6P1L5 589 aa5.78□□□□□ -1.48
VPS35-207ENST00000568191 CAPN12Q6ZSI9 719 aa5.78□□□□□ -1.48
VPS35-207ENST00000568191 ZNF438Q7Z4V0 828 aa5.78□□□□□ -1.48
VPS35-207ENST00000568191 TXNRD3Q86VQ6 643 aa5.78□□□□□ -1.48
VPS35-207ENST00000568191 IL22RA1Q8N6P7 574 aa5.78□□□□□ -1.48
VPS35-207ENST00000568191 PMEPA1Q969W9 287 aa5.78□□□□□ -1.48
VPS35-207ENST00000568191 ABI2Q9NYB9 513 aaPredicted RBP5.78□□□□□ -1.48
VPS35-207ENST00000568191 SEPT3Q9UH03 358 aa5.78□□□□□ -1.48
VPS35-207ENST00000568191 FAM13AO94988 1023 aa5.77□□□□□ -1.49
VPS35-207ENST00000568191 ADGRE1Q14246 886 aa5.77□□□□□ -1.49
VPS35-207ENST00000568191 NCAPG2Q86XI2 1143 aa5.77□□□□□ -1.49
VPS35-207ENST00000568191 GTF3C2Q8WUA4 911 aaPredicted RBP5.77□□□□□ -1.49
VPS35-207ENST00000568191 NUDT16Q96DE0 195 aaKnown RBP5.77□□□□□ -1.49
VPS35-207ENST00000568191 ELP3Q9H9T3 547 aa5.77□□□□□ -1.49
VPS35-207ENST00000568191 SELPP16109 830 aa5.76□□□□□ -1.49
VPS35-207ENST00000568191 SSFA2P28290 1259 aa5.76□□□□□ -1.49
VPS35-207ENST00000568191 USP5P45974 858 aa5.76□□□□□ -1.49
VPS35-207ENST00000568191 DNM1Q05193 864 aaKnown RBP5.76□□□□□ -1.49
VPS35-207ENST00000568191 MBTPS1Q14703 1052 aa5.76□□□□□ -1.49
VPS35-207ENST00000568191 TRIP4Q15650 581 aaPredicted RBP5.76□□□□□ -1.49
VPS35-207ENST00000568191 GRIK5Q16478 980 aa5.76□□□□□ -1.49
VPS35-207ENST00000568191 C8orf34Q49A92 452 aa5.76□□□□□ -1.49
VPS35-207ENST00000568191 PPME1Q9Y570 386 aa5.76□□□□□ -1.49
VPS35-207ENST00000568191 ZBTB39O15060 712 aa5.75□□□□□ -1.49
VPS35-207ENST00000568191 MZF1P28698 734 aaPredicted RBP5.75□□□□□ -1.49
VPS35-207ENST00000568191 EHHADHQ08426 723 aa5.75□□□□□ -1.49
VPS35-207ENST00000568191 SF3B2Q13435 895 aaKnown RBP5.75□□□□□ -1.49
VPS35-207ENST00000568191 CEP135Q66GS9 1140 aa5.75□□□□□ -1.49
VPS35-207ENST00000568191 SHISA2Q6UWI4 295 aa5.75□□□□□ -1.49
VPS35-207ENST00000568191 EDEM1Q92611 657 aa5.75□□□□□ -1.49
VPS35-207ENST00000568191 MRPL18Q9H0U6 180 aaKnown RBP5.75□□□□□ -1.49
VPS35-207ENST00000568191 TPSG1Q9NRR2 321 aa5.75□□□□□ -1.49
VPS35-207ENST00000568191 H2AFB1P0C5Y9 115 aa5.74□□□□□ -1.49
VPS35-207ENST00000568191 H2AFB2P0C5Z0 115 aa5.74□□□□□ -1.49
VPS35-207ENST00000568191 CES1P23141 567 aa5.74□□□□□ -1.49
VPS35-207ENST00000568191 CDC27P30260 824 aa5.74□□□□□ -1.49
VPS35-207ENST00000568191 CABP4P57796 275 aa5.74□□□□□ -1.49
VPS35-207ENST00000568191 FKBP4Q02790 459 aaKnown RBP eCLIP5.74□□□□□ -1.49
VPS35-207ENST00000568191 XKR5Q6UX68 686 aa5.74□□□□□ -1.49
VPS35-207ENST00000568191 TP53INP1Q96A56 240 aa5.74□□□□□ -1.49
VPS35-207ENST00000568191 USTQ9Y2C2 406 aa5.74□□□□□ -1.49
VPS35-207ENST00000568191 TMEM88BA6NKF7 163 aa5.73□□□□□ -1.49
VPS35-207ENST00000568191 ABL1P00519 1130 aa5.73□□□□□ -1.49
VPS35-207ENST00000568191 PTPRAP18433 802 aa5.73□□□□□ -1.49
VPS35-207ENST00000568191 EIF1AXP47813 144 aaKnown RBP5.73□□□□□ -1.49
VPS35-207ENST00000568191 RSPO4Q2I0M5 234 aaPredicted RBP5.73□□□□□ -1.49
VPS35-207ENST00000568191 FAM26DQ5JW98 314 aa5.73□□□□□ -1.49
VPS35-207ENST00000568191 ATCAYQ86WG3 371 aa5.73□□□□□ -1.49
VPS35-207ENST00000568191 WFDC12Q8WWY7 111 aa5.73□□□□□ -1.49
VPS35-207ENST00000568191 AKTIPQ9H8T0 292 aa5.73□□□□□ -1.49
VPS35-207ENST00000568191 SLAIN2Q9P270 581 aa5.73□□□□□ -1.49
VPS35-207ENST00000568191 DLL1O00548 723 aa5.72□□□□□ -1.49
VPS35-207ENST00000568191 DYRK3O43781 588 aa5.72□□□□□ -1.49
VPS35-207ENST00000568191 KIF4AO95239 1232 aa5.72□□□□□ -1.49
VPS35-207ENST00000568191 PDGFAP04085 211 aa5.72□□□□□ -1.49
VPS35-207ENST00000568191 MPSTP25325 297 aa5.72□□□□□ -1.49
VPS35-207ENST00000568191 IREB2P48200 963 aaKnown RBP5.72□□□□□ -1.49
VPS35-207ENST00000568191 NKAPLQ5M9Q1 402 aa5.72□□□□□ -1.49
VPS35-207ENST00000568191 ILDR2Q71H61 639 aa5.72□□□□□ -1.49
VPS35-207ENST00000568191 PBX4Q9BYU1 374 aa5.72□□□□□ -1.49
VPS35-207ENST00000568191 LACRTQ9GZZ8 138 aa5.72□□□□□ -1.49
VPS35-207ENST00000568191 TRIM33Q9UPN9 1127 aa5.72□□□□□ -1.49
VPS35-207ENST00000568191 NEFLP07196 543 aa5.71□□□□□ -1.5
VPS35-207ENST00000568191 ARL4DP49703 201 aa5.71□□□□□ -1.5
VPS35-207ENST00000568191 XP32Q5T750 250 aa5.71□□□□□ -1.5
VPS35-207ENST00000568191 TMEM130Q8N3G9 435 aa5.71□□□□□ -1.5
VPS35-207ENST00000568191 KLHL23Q8NBE8 558 aa5.71□□□□□ -1.5
VPS35-207ENST00000568191 C1orf115Q9H7X2 142 aa5.71□□□□□ -1.5
VPS35-207ENST00000568191 LINC01387J3KSC0 135 aa5.7□□□□□ -1.5
VPS35-207ENST00000568191 EIF4EBP3O60516 100 aaPredicted RBP5.7□□□□□ -1.5
VPS35-207ENST00000568191 PHACTR2O75167 634 aa5.7□□□□□ -1.5
VPS35-207ENST00000568191 DEAF1O75398 565 aaPredicted RBP5.7□□□□□ -1.5
VPS35-207ENST00000568191 EDN3P14138 238 aa5.7□□□□□ -1.5
VPS35-207ENST00000568191 CD68P34810 354 aaPredicted RBP5.7□□□□□ -1.5
VPS35-207ENST00000568191 ATP11AP98196 1134 aa5.7□□□□□ -1.5
VPS35-207ENST00000568191 SETDB1Q15047 1291 aa5.7□□□□□ -1.5
VPS35-207ENST00000568191 ZMYM1Q5SVZ6 1142 aa5.7□□□□□ -1.5
VPS35-207ENST00000568191 CEP120Q8N960 986 aa5.7□□□□□ -1.5
VPS35-207ENST00000568191 CEP41Q9BYV8 373 aa5.7□□□□□ -1.5
VPS35-207ENST00000568191 RASSF4Q9H2L5 321 aa5.7□□□□□ -1.5
VPS35-207ENST00000568191 TMEM63CQ9P1W3 806 aa5.7□□□□□ -1.5
VPS35-207ENST00000568191 SCO2A0A1W2PP80 73 aa5.69□□□□□ -1.5
VPS35-207ENST00000568191 CYP2E1P05181 493 aaPredicted RBP5.69□□□□□ -1.5
VPS35-207ENST00000568191 NPR3P17342 541 aa5.69□□□□□ -1.5
VPS35-207ENST00000568191 COL13A1Q5TAT6 717 aaPredicted RBP5.69□□□□□ -1.5
VPS35-207ENST00000568191 SLC51AQ86UW1 340 aa5.69□□□□□ -1.5
VPS35-207ENST00000568191 SNX29Q8TEQ0 813 aa5.69□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms