RNA–Protein interactions for RNA: ENST00000568029.5

VPS39-209, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 5

Gene VPS39, Length 791 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-209ENST00000568029 ATF3P18847 181 aa8.36□□□□□ -1.07
VPS39-209ENST00000568029 GNASQ5JWF2 1037 aa8.36□□□□□ -1.07
VPS39-209ENST00000568029 SLC27A3Q5K4L6 730 aa8.36□□□□□ -1.07
VPS39-209ENST00000568029 FOXD4L5Q5VV16 416 aaPredicted RBP8.36□□□□□ -1.07
VPS39-209ENST00000568029 USP3Q9Y6I4 520 aa8.36□□□□□ -1.07
VPS39-209ENST00000568029 CAMTA1Q9Y6Y1 1673 aa8.36□□□□□ -1.07
VPS39-209ENST00000568029 BLMP54132 1417 aaPredicted RBP8.36□□□□□ -1.07
VPS39-209ENST00000568029 TNKS1BP1Q9C0C2 1729 aaKnown RBP8.35□□□□□ -1.07
VPS39-209ENST00000568029 SERTM1A2A2V5 107 aa8.35□□□□□ -1.07
VPS39-209ENST00000568029 TSPY4P0CV99 314 aa8.35□□□□□ -1.07
VPS39-209ENST00000568029 TSPY10P0CW01 314 aa8.35□□□□□ -1.07
VPS39-209ENST00000568029 CTSOP43234 321 aaPredicted RBP8.35□□□□□ -1.07
VPS39-209ENST00000568029 TMEM214Q6NUQ4 689 aaKnown RBP8.35□□□□□ -1.07
VPS39-209ENST00000568029 TRIM46Q7Z4K8 759 aa8.35□□□□□ -1.07
VPS39-209ENST00000568029 RNF217Q8TC41 542 aa8.35□□□□□ -1.07
VPS39-209ENST00000568029 VTI1AQ96AJ9 217 aa8.35□□□□□ -1.07
VPS39-209ENST00000568029 PURBQ96QR8 312 aaKnown RBP8.35□□□□□ -1.07
VPS39-209ENST00000568029 C19orf44Q9H6X5 657 aa8.35□□□□□ -1.07
VPS39-209ENST00000568029 POLMQ9NP87 494 aaPredicted RBP8.35□□□□□ -1.07
VPS39-209ENST00000568029 DCCP43146 1447 aa8.35□□□□□ -1.07
VPS39-209ENST00000568029 SPHKAPQ2M3C7 1700 aa8.34□□□□□ -1.07
VPS39-209ENST00000568029 SOS2Q07890 1332 aaPredicted RBP8.34□□□□□ -1.07
VPS39-209ENST00000568029 MYOM2P54296 1465 aa8.34□□□□□ -1.07
VPS39-209ENST00000568029 LGR5O75473 907 aa8.34□□□□□ -1.07
VPS39-209ENST00000568029 NOS2P35228 1153 aa8.34□□□□□ -1.07
VPS39-209ENST00000568029 SND1Q7KZF4 910 aaKnown RBP eCLIP8.34□□□□□ -1.07
VPS39-209ENST00000568029 ZDHHC1Q8WTX9 485 aa8.34□□□□□ -1.07
VPS39-209ENST00000568029 MYO19Q96H55 970 aa8.34□□□□□ -1.07
VPS39-209ENST00000568029 GZF1Q9H116 711 aaPredicted RBP8.34□□□□□ -1.07
VPS39-209ENST00000568029 TRPC5Q9UL62 973 aaPredicted RBP8.34□□□□□ -1.07
VPS39-209ENST00000568029 HFM1A2PYH4 1435 aa8.34□□□□□ -1.07
VPS39-209ENST00000568029 RALGAPBQ86X10 1494 aa8.33□□□□□ -1.08
VPS39-209ENST00000568029 TTLL8A6PVC2 850 aa8.33□□□□□ -1.08
VPS39-209ENST00000568029 ABCC5O15440 1437 aa8.33□□□□□ -1.08
VPS39-209ENST00000568029 SF3B2Q13435 895 aaKnown RBP8.33□□□□□ -1.08
VPS39-209ENST00000568029 C1orf53Q5VUE5 145 aa8.33□□□□□ -1.08
VPS39-209ENST00000568029 L3MBTL2Q969R5 705 aa8.33□□□□□ -1.08
VPS39-209ENST00000568029 AAASQ9NRG9 546 aa8.33□□□□□ -1.08
VPS39-209ENST00000568029 RRP7BPQ9NSQ0 103 aa8.33□□□□□ -1.08
VPS39-209ENST00000568029 PODXL2Q9NZ53 605 aa8.33□□□□□ -1.08
VPS39-209ENST00000568029 CABP1Q9NZU7 370 aa8.33□□□□□ -1.08
VPS39-209ENST00000568029 GPC6Q9Y625 555 aaPredicted RBP8.33□□□□□ -1.08
VPS39-209ENST00000568029 PTPN23Q9H3S7 1636 aa8.32□□□□□ -1.08
VPS39-209ENST00000568029 SOWAHDA6NJG2 315 aa8.32□□□□□ -1.08
VPS39-209ENST00000568029 C4orf17Q53FE4 359 aa8.32□□□□□ -1.08
VPS39-209ENST00000568029 TBCELQ5QJ74 424 aa8.32□□□□□ -1.08
VPS39-209ENST00000568029 C6orf118Q5T5N4 469 aa8.32□□□□□ -1.08
VPS39-209ENST00000568029 LYSMD3Q7Z3D4 306 aa8.32□□□□□ -1.08
VPS39-209ENST00000568029 HELQQ8TDG4 1101 aa8.32□□□□□ -1.08
VPS39-209ENST00000568029 LRRC59Q96AG4 307 aaKnown RBP8.32□□□□□ -1.08
VPS39-209ENST00000568029 ZDHHC3Q9NYG2 299 aa8.32□□□□□ -1.08
VPS39-209ENST00000568029 TNS1Q9HBL0 1735 aaKnown RBP8.32□□□□□ -1.08
VPS39-209ENST00000568029 UTRNP46939 3433 aa8.31□□□□□ -1.08
VPS39-209ENST00000568029 E9PCH4 1651 aa8.31□□□□□ -1.08
VPS39-209ENST00000568029 PTCH1Q13635 1447 aa8.31□□□□□ -1.08
VPS39-209ENST00000568029 ADGRL3Q9HAR2 1447 aa8.31□□□□□ -1.08
VPS39-209ENST00000568029 BMP1P13497 986 aa8.31□□□□□ -1.08
VPS39-209ENST00000568029 NPR3P17342 541 aa8.31□□□□□ -1.08
VPS39-209ENST00000568029 YY1P25490 414 aa8.31□□□□□ -1.08
VPS39-209ENST00000568029 SERPINB4P48594 390 aa8.31□□□□□ -1.08
VPS39-209ENST00000568029 NEUROD1Q13562 356 aa8.31□□□□□ -1.08
VPS39-209ENST00000568029 C16orf46Q6P387 395 aa8.31□□□□□ -1.08
VPS39-209ENST00000568029 NBPF10Q6P3W6 841 aaKnown RBP8.31□□□□□ -1.08
VPS39-209ENST00000568029 GTF3C2Q8WUA4 911 aaPredicted RBP8.31□□□□□ -1.08
VPS39-209ENST00000568029 ZFP42Q96MM3 310 aa8.31□□□□□ -1.08
VPS39-209ENST00000568029 MKNK1Q9BUB5 465 aa8.31□□□□□ -1.08
VPS39-209ENST00000568029 SEPT3Q9UH03 358 aa8.31□□□□□ -1.08
VPS39-209ENST00000568029 AMOTL2Q9Y2J4 779 aa8.31□□□□□ -1.08
VPS39-209ENST00000568029 TBX22Q9Y458 520 aa8.31□□□□□ -1.08
VPS39-209ENST00000568029 C1orf167Q5SNV9 1468 aa8.31□□□□□ -1.08
VPS39-209ENST00000568029 PLCH1Q4KWH8 1693 aa8.3□□□□□ -1.08
VPS39-209ENST00000568029 NAIPQ13075 1403 aa8.3□□□□□ -1.08
VPS39-209ENST00000568029 LCE2BO14633 110 aa8.3□□□□□ -1.08
VPS39-209ENST00000568029 ICMTO60725 284 aa8.3□□□□□ -1.08
VPS39-209ENST00000568029 SCNN1AP37088 669 aa8.3□□□□□ -1.08
VPS39-209ENST00000568029 RTN1Q16799 776 aa8.3□□□□□ -1.08
VPS39-209ENST00000568029 ATP13A2Q9NQ11 1180 aa8.3□□□□□ -1.08
VPS39-209ENST00000568029 ZNF232Q9UNY5 417 aa8.3□□□□□ -1.08
VPS39-209ENST00000568029 FKBP4Q02790 459 aaKnown RBP eCLIP8.29□□□□□ -1.08
VPS39-209ENST00000568029 NBPF1Q3BBV0 1214 aa8.29□□□□□ -1.08
VPS39-209ENST00000568029 TMCO4Q5TGY1 634 aa8.29□□□□□ -1.08
VPS39-209ENST00000568029 CAPN12Q6ZSI9 719 aa8.29□□□□□ -1.08
VPS39-209ENST00000568029 ORAI2Q96SN7 254 aa8.29□□□□□ -1.08
VPS39-209ENST00000568029 SIN3AQ96ST3 1273 aa8.29□□□□□ -1.08
VPS39-209ENST00000568029 CCDC9Q9Y3X0 531 aaKnown RBP8.29□□□□□ -1.08
VPS39-209ENST00000568029 METP08581 1390 aa8.29□□□□□ -1.08
VPS39-209ENST00000568029 DAPK1P53355 1430 aa8.29□□□□□ -1.08
VPS39-209ENST00000568029 PXDNQ92626 1479 aa8.28□□□□□ -1.08
VPS39-209ENST00000568029 ROCK1Q13464 1354 aa8.28□□□□□ -1.08
VPS39-209ENST00000568029 KANK1Q14678 1352 aa8.28□□□□□ -1.08
VPS39-209ENST00000568029 PIK3R4Q99570 1358 aa8.28□□□□□ -1.08
VPS39-209ENST00000568029 A0A1B0GTH6 734 aa8.28□□□□□ -1.08
VPS39-209ENST00000568029 PLA2G4AP47712 749 aa8.28□□□□□ -1.08
VPS39-209ENST00000568029 R3HDM1Q15032 1099 aaKnown RBP8.28□□□□□ -1.08
VPS39-209ENST00000568029 HIF1AQ16665 826 aa8.28□□□□□ -1.08
VPS39-209ENST00000568029 ALDH16A1Q8IZ83 802 aa8.28□□□□□ -1.08
VPS39-209ENST00000568029 DNMT3AQ9Y6K1 912 aaPredicted RBP8.28□□□□□ -1.08
VPS39-209ENST00000568029 ABCA3Q99758 1704 aa8.28□□□□□ -1.08
VPS39-209ENST00000568029 USP32Q8NFA0 1604 aa8.28□□□□□ -1.08
VPS39-209ENST00000568029 RGPD1P0DJD0 1748 aa8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms