RNA–Protein interactions for RNA: ENST00000566126.5

CLK3-217, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 732 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-217ENST00000566126 SCAF8Q9UPN6 1271 aaKnown RBP22.21■■□□□ 1.15
CLK3-217ENST00000566126 ZNF280AP59817 542 aaPredicted RBP22.2■■□□□ 1.14
CLK3-217ENST00000566126 SREBF2Q12772 1141 aa22.2■■□□□ 1.14
CLK3-217ENST00000566126 TAF7Q15545 349 aaPredicted RBP22.2■■□□□ 1.14
CLK3-217ENST00000566126 CC2D1BQ5T0F9 858 aaKnown RBP22.19■■□□□ 1.14
CLK3-217ENST00000566126 TMC4Q7Z404 712 aa22.19■■□□□ 1.14
CLK3-217ENST00000566126 ARMC5Q96C12 935 aa22.19■■□□□ 1.14
CLK3-217ENST00000566126 NSFL1CQ9UNZ2 370 aaKnown RBP22.19■■□□□ 1.14
CLK3-217ENST00000566126 H0YGN5 161 aa22.18■■□□□ 1.14
CLK3-217ENST00000566126 EIF4G2P78344 907 aaKnown RBP eCLIP22.18■■□□□ 1.14
CLK3-217ENST00000566126 PRAMEF18Q5VWM3 479 aa22.18■■□□□ 1.14
CLK3-217ENST00000566126 COL4A1P02462 1669 aa22.17■■□□□ 1.14
CLK3-217ENST00000566126 PITPNM2Q9BZ72 1349 aa22.17■■□□□ 1.14
CLK3-217ENST00000566126 C6orf229H3BNL8 230 aa22.17■■□□□ 1.14
CLK3-217ENST00000566126 PTPN22Q9Y2R2 807 aa22.17■■□□□ 1.14
CLK3-217ENST00000566126 ZNF609O15014 1411 aa22.16■■□□□ 1.14
CLK3-217ENST00000566126 PSME4Q14997 1843 aa22.16■■□□□ 1.14
CLK3-217ENST00000566126 GPSM2P81274 684 aa22.16■■□□□ 1.14
CLK3-217ENST00000566126 PER1O15534 1290 aaPredicted RBP22.15■■□□□ 1.14
CLK3-217ENST00000566126 LRP10Q7Z4F1 713 aa22.15■■□□□ 1.14
CLK3-217ENST00000566126 HTATSF1O43719 755 aaKnown RBP22.14■■□□□ 1.13
CLK3-217ENST00000566126 EIF4A1P60842 406 aaKnown RBP22.14■■□□□ 1.13
CLK3-217ENST00000566126 TTLL12Q14166 644 aaPredicted RBP22.14■■□□□ 1.13
CLK3-217ENST00000566126 ALDH1A1P00352 501 aa22.13■■□□□ 1.13
CLK3-217ENST00000566126 CHRDL2Q6WN34 429 aa22.13■■□□□ 1.13
CLK3-217ENST00000566126 NLRP10Q86W26 655 aa22.13■■□□□ 1.13
CLK3-217ENST00000566126 CELF1Q92879 486 aaKnown RBP22.13■■□□□ 1.13
CLK3-217ENST00000566126 EYA3Q99504 573 aa22.13■■□□□ 1.13
CLK3-217ENST00000566126 THUMPD2Q9BTF0 503 aaKnown RBP22.13■■□□□ 1.13
CLK3-217ENST00000566126 PTPN12Q05209 780 aaKnown RBP22.12■■□□□ 1.13
CLK3-217ENST00000566126 AGBL3Q8NEM8 1001 aa22.12■■□□□ 1.13
CLK3-217ENST00000566126 TBC1D16Q8TBP0 767 aa22.12■■□□□ 1.13
CLK3-217ENST00000566126 MYOZ2Q9NPC6 264 aa22.12■■□□□ 1.13
CLK3-217ENST00000566126 SPRYD7Q5W111 196 aa22.11■■□□□ 1.13
CLK3-217ENST00000566126 RSBN1LQ6PCB5 846 aaPredicted RBP22.11■■□□□ 1.13
CLK3-217ENST00000566126 GMLQ99445 158 aa22.11■■□□□ 1.13
CLK3-217ENST00000566126 RBM27Q9P2N5 1060 aaKnown RBP22.11■■□□□ 1.13
CLK3-217ENST00000566126 ERBB4Q15303 1308 aa22.1■■□□□ 1.13
CLK3-217ENST00000566126 LAMB1P07942 1786 aa22.1■■□□□ 1.13
CLK3-217ENST00000566126 CAP1Q01518 475 aa22.1■■□□□ 1.13
CLK3-217ENST00000566126 CD99L2Q8TCZ2 262 aa22.1■■□□□ 1.13
CLK3-217ENST00000566126 ZNF333Q96JL9 665 aa22.1■■□□□ 1.13
CLK3-217ENST00000566126 TRMT112Q9UI30 125 aaKnown RBP22.1■■□□□ 1.13
CLK3-217ENST00000566126 TIMELESSQ9UNS1 1208 aa22.1■■□□□ 1.13
CLK3-217ENST00000566126 SH3TC1Q8TE82 1336 aa22.09■■□□□ 1.13
CLK3-217ENST00000566126 PDIA6Q15084 440 aa22.09■■□□□ 1.13
CLK3-217ENST00000566126 IFNL1Q8IU54 200 aa22.09■■□□□ 1.13
CLK3-217ENST00000566126 NECTIN2Q92692 538 aa22.09■■□□□ 1.13
CLK3-217ENST00000566126 ERO1AQ96HE7 468 aa22.09■■□□□ 1.13
CLK3-217ENST00000566126 TMEM106CQ9BVX2 250 aa22.09■■□□□ 1.13
CLK3-217ENST00000566126 USP17L8P0C7I0 530 aa22.08■■□□□ 1.13
CLK3-217ENST00000566126 TCIRG1Q13488 830 aa22.08■■□□□ 1.13
CLK3-217ENST00000566126 NBPF9Q3BBW0 867 aa22.08■■□□□ 1.13
CLK3-217ENST00000566126 ZC3H12CQ9C0D7 883 aaKnown RBP22.08■■□□□ 1.13
CLK3-217ENST00000566126 DLG5Q8TDM6 1919 aa22.08■■□□□ 1.12
CLK3-217ENST00000566126 IGF2BP3O00425 579 aaKnown RBP eCLIP22.07■■□□□ 1.12
CLK3-217ENST00000566126 PNISRQ8TF01 805 aaKnown RBP22.07■■□□□ 1.12
CLK3-217ENST00000566126 EFCC1Q9HA90 598 aa22.07■■□□□ 1.12
CLK3-217ENST00000566126 PROSER3Q2NL68 480 aa22.06■■□□□ 1.12
CLK3-217ENST00000566126 LDLRAD1Q5T700 205 aa22.06■■□□□ 1.12
CLK3-217ENST00000566126 MANSC4A6NHS7 340 aaPredicted RBP22.05■■□□□ 1.12
CLK3-217ENST00000566126 ANXA1P04083 346 aa22.05■■□□□ 1.12
CLK3-217ENST00000566126 NF2P35240 595 aa22.05■■□□□ 1.12
CLK3-217ENST00000566126 PRKG1Q13976 671 aa22.05■■□□□ 1.12
CLK3-217ENST00000566126 ZNF428Q96B54 188 aa22.05■■□□□ 1.12
CLK3-217ENST00000566126 INHBEP58166 350 aa22.04■■□□□ 1.12
CLK3-217ENST00000566126 SF3B3Q15393 1217 aaKnown RBP22.04■■□□□ 1.12
CLK3-217ENST00000566126 HSP90AB3PQ58FF7 597 aa22.04■■□□□ 1.12
CLK3-217ENST00000566126 ARMC9Q7Z3E5 817 aa22.04■■□□□ 1.12
CLK3-217ENST00000566126 MNX1P50219 401 aaPredicted RBP22.03■■□□□ 1.12
CLK3-217ENST00000566126 CNGB1Q14028 1251 aaPredicted RBP22.03■■□□□ 1.12
CLK3-217ENST00000566126 PODXL2Q9NZ53 605 aa22.03■■□□□ 1.12
CLK3-217ENST00000566126 LAMA3Q16787 3333 aa22.02■■□□□ 1.12
CLK3-217ENST00000566126 G3V3G9 751 aa22.02■■□□□ 1.12
CLK3-217ENST00000566126 U2AF1L5P0DN76 240 aaPredicted RBP22.02■■□□□ 1.12
CLK3-217ENST00000566126 U2AF1Q01081 240 aaKnown RBP eCLIP22.02■■□□□ 1.12
CLK3-217ENST00000566126 CRHR2Q13324 411 aa22.02■■□□□ 1.12
CLK3-217ENST00000566126 DCAF8Q5TAQ9 597 aa22.02■■□□□ 1.12
CLK3-217ENST00000566126 PRO3102Q9H379 93 aa22.02■■□□□ 1.12
CLK3-217ENST00000566126 FZD1Q9UP38 647 aa22.02■■□□□ 1.12
CLK3-217ENST00000566126 ZNF646O15015 1829 aaPredicted RBP22.01■■□□□ 1.11
CLK3-217ENST00000566126 UFL1O94874 794 aa22.01■■□□□ 1.11
CLK3-217ENST00000566126 WNT10BO00744 389 aa22■■□□□ 1.11
CLK3-217ENST00000566126 SLC4A8Q2Y0W8 1093 aa22■■□□□ 1.11
CLK3-217ENST00000566126 ANGEL1Q9UNK9 670 aaKnown RBP22■■□□□ 1.11
CLK3-217ENST00000566126 RPS8P62241 208 aaKnown RBP21.99■■□□□ 1.11
CLK3-217ENST00000566126 SP3Q02447 781 aa21.99■■□□□ 1.11
CLK3-217ENST00000566126 COPS6Q7L5N1 327 aa21.99■■□□□ 1.11
CLK3-217ENST00000566126 NUDCQ9Y266 331 aa21.99■■□□□ 1.11
CLK3-217ENST00000566126 PTCH2Q9Y6C5 1203 aa21.99■■□□□ 1.11
CLK3-217ENST00000566126 ZBTB48P10074 688 aaPredicted RBP21.98■■□□□ 1.11
CLK3-217ENST00000566126 EIF2S2P20042 333 aaKnown RBP21.98■■□□□ 1.11
CLK3-217ENST00000566126 SLC9C1Q4G0N8 1177 aa21.98■■□□□ 1.11
CLK3-217ENST00000566126 SLC10A4Q96EP9 437 aa21.98■■□□□ 1.11
CLK3-217ENST00000566126 CFAP53Q96M91 514 aa21.98■■□□□ 1.11
CLK3-217ENST00000566126 USP17L3A6NCW0 530 aa21.97■■□□□ 1.11
CLK3-217ENST00000566126 USP17L4A6NCW7 530 aa21.97■■□□□ 1.11
CLK3-217ENST00000566126 AIMP1Q12904 312 aaKnown RBP21.97■■□□□ 1.11
CLK3-217ENST00000566126 USP17L1Q7RTZ2 530 aa21.97■■□□□ 1.11
CLK3-217ENST00000566126 NBPF11Q86T75 865 aa21.97■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 82.9 ms