RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 C3orf67Q6ZVT6 689 aa21.84■■□□□ 1.09
CLN3-217ENST00000565354 FAM89AQ96GI7 184 aa21.84■■□□□ 1.09
CLN3-217ENST00000565354 NLRP3Q96P20 1036 aa21.84■■□□□ 1.09
CLN3-217ENST00000565354 NEURL1BA8MQ27 555 aa21.83■■□□□ 1.09
CLN3-217ENST00000565354 IGKV5-2P06315 115 aa21.83■■□□□ 1.09
CLN3-217ENST00000565354 ZBTB38Q8NAP3 1195 aaPredicted RBP21.83■■□□□ 1.09
CLN3-217ENST00000565354 LINS1Q8NG48 757 aa21.83■■□□□ 1.09
CLN3-217ENST00000565354 TMX4Q9H1E5 349 aaPredicted RBP21.83■■□□□ 1.09
CLN3-217ENST00000565354 CELF2O95319 508 aaKnown RBP21.82■■□□□ 1.08
CLN3-217ENST00000565354 HCLS1P14317 486 aaPredicted RBP21.82■■□□□ 1.08
CLN3-217ENST00000565354 HSP90B1P14625 803 aaKnown RBP21.82■■□□□ 1.08
CLN3-217ENST00000565354 CXCL9Q07325 125 aa21.82■■□□□ 1.08
CLN3-217ENST00000565354 HHIPL1Q96JK4 782 aa21.82■■□□□ 1.08
CLN3-217ENST00000565354 ZNRF3Q9ULT6 936 aa21.82■■□□□ 1.08
CLN3-217ENST00000565354 NOB1Q9ULX3 412 aaKnown RBP21.82■■□□□ 1.08
CLN3-217ENST00000565354 ATP6V0A2Q9Y487 856 aa21.82■■□□□ 1.08
CLN3-217ENST00000565354 PCCAP05165 728 aaPredicted RBP21.81■■□□□ 1.08
CLN3-217ENST00000565354 API5Q9BZZ5 524 aaKnown RBP21.81■■□□□ 1.08
CLN3-217ENST00000565354 SRCIN1Q9C0H9 1055 aa21.81■■□□□ 1.08
CLN3-217ENST00000565354 IRS4O14654 1257 aaPredicted RBP21.8■■□□□ 1.08
CLN3-217ENST00000565354 IPO8O15397 1037 aaKnown RBP21.8■■□□□ 1.08
CLN3-217ENST00000565354 GMPSP49915 693 aaPredicted RBP21.8■■□□□ 1.08
CLN3-217ENST00000565354 BRPF1P55201 1214 aaPredicted RBP21.8■■□□□ 1.08
CLN3-217ENST00000565354 SLC10A5Q5PT55 438 aa21.8■■□□□ 1.08
CLN3-217ENST00000565354 SUPT20HQ8NEM7 779 aa21.8■■□□□ 1.08
CLN3-217ENST00000565354 FRAT1Q92837 279 aaPredicted RBP21.8■■□□□ 1.08
CLN3-217ENST00000565354 GLIS2Q9BZE0 524 aaPredicted RBP21.8■■□□□ 1.08
CLN3-217ENST00000565354 PGAP2Q9UHJ9 254 aa21.8■■□□□ 1.08
CLN3-217ENST00000565354 PDE4DIPQ5VU43 2346 aa21.8■■□□□ 1.08
CLN3-217ENST00000565354 BCAR3O75815 825 aa21.79■■□□□ 1.08
CLN3-217ENST00000565354 GCKRQ14397 625 aa21.79■■□□□ 1.08
CLN3-217ENST00000565354 BEND3Q5T5X7 828 aa21.79■■□□□ 1.08
CLN3-217ENST00000565354 JARID2Q92833 1246 aaPredicted RBP21.79■■□□□ 1.08
CLN3-217ENST00000565354 RTFDC1Q9BY42 306 aaPredicted RBP21.79■■□□□ 1.08
CLN3-217ENST00000565354 MCOLN1Q9GZU1 580 aa21.79■■□□□ 1.08
CLN3-217ENST00000565354 LAMB2P55268 1798 aa21.79■■□□□ 1.08
CLN3-217ENST00000565354 CDHR2Q9BYE9 1310 aa21.79■■□□□ 1.08
CLN3-217ENST00000565354 TNRC18O15417 2968 aaPredicted RBP21.77■■□□□ 1.08
CLN3-217ENST00000565354 ALDH1L1O75891 902 aa21.77■■□□□ 1.08
CLN3-217ENST00000565354 ZC3H15Q8WU90 426 aaKnown RBP21.77■■□□□ 1.08
CLN3-217ENST00000565354 C9orf78Q9NZ63 289 aaPredicted RBP21.77■■□□□ 1.08
CLN3-217ENST00000565354 ABCC4O15439 1325 aa21.77■■□□□ 1.07
CLN3-217ENST00000565354 CIAPIN1Q6FI81 312 aa21.76■■□□□ 1.07
CLN3-217ENST00000565354 UBE3BQ7Z3V4 1068 aa21.76■■□□□ 1.07
CLN3-217ENST00000565354 DDX60Q8IY21 1712 aaKnown RBP21.75■■□□□ 1.07
CLN3-217ENST00000565354 PDE8AO60658 829 aa21.75■■□□□ 1.07
CLN3-217ENST00000565354 BBOX1O75936 387 aa21.75■■□□□ 1.07
CLN3-217ENST00000565354 HIRAP54198 1017 aaPredicted RBP21.75■■□□□ 1.07
CLN3-217ENST00000565354 KIAA2012Q0VF49 1180 aa21.75■■□□□ 1.07
CLN3-217ENST00000565354 TNIP1Q15025 636 aa21.75■■□□□ 1.07
CLN3-217ENST00000565354 DPP8Q6V1X1 898 aaPredicted RBP21.75■■□□□ 1.07
CLN3-217ENST00000565354 ARHGAP45Q92619 1136 aa21.75■■□□□ 1.07
CLN3-217ENST00000565354 ZNF408Q9H9D4 720 aa21.75■■□□□ 1.07
CLN3-217ENST00000565354 DDX46Q7L014 1031 aaKnown RBP21.74■■□□□ 1.07
CLN3-217ENST00000565354 CDC37L1Q7L3B6 337 aa21.74■■□□□ 1.07
CLN3-217ENST00000565354 SP8Q8IXZ3 490 aa21.74■■□□□ 1.07
CLN3-217ENST00000565354 H7C1W4 665 aa21.73■■□□□ 1.07
CLN3-217ENST00000565354 RAD17O75943 681 aa21.73■■□□□ 1.07
CLN3-217ENST00000565354 CCT4P50991 539 aaKnown RBP21.73■■□□□ 1.07
CLN3-217ENST00000565354 NOGQ13253 232 aa21.73■■□□□ 1.07
CLN3-217ENST00000565354 DGKZQ13574 1117 aa21.73■■□□□ 1.07
CLN3-217ENST00000565354 ZKSCAN2Q63HK3 967 aa21.73■■□□□ 1.07
CLN3-217ENST00000565354 MPNDQ8N594 471 aa21.73■■□□□ 1.07
CLN3-217ENST00000565354 TRPM4Q8TD43 1214 aa21.73■■□□□ 1.07
CLN3-217ENST00000565354 RCAN3Q9UKA8 241 aa21.73■■□□□ 1.07
CLN3-217ENST00000565354 TAF1P21675 1872 aa21.73■■□□□ 1.07
CLN3-217ENST00000565354 POLR2AP24928 1970 aaKnown RBP21.72■■□□□ 1.07
CLN3-217ENST00000565354 GRM8O00222 908 aa21.72■■□□□ 1.07
CLN3-217ENST00000565354 ATF7IPQ6VMQ6 1270 aa21.72■■□□□ 1.07
CLN3-217ENST00000565354 CCDC152Q4G0S7 254 aa21.71■■□□□ 1.07
CLN3-217ENST00000565354 PCDH10Q9P2E7 1040 aa21.71■■□□□ 1.07
CLN3-217ENST00000565354 CNOT7Q9UIV1 285 aaKnown RBP21.71■■□□□ 1.07
CLN3-217ENST00000565354 SF3B3Q15393 1217 aaKnown RBP21.7■■□□□ 1.06
CLN3-217ENST00000565354 FTSJ3Q8IY81 847 aaKnown RBP21.7■■□□□ 1.06
CLN3-217ENST00000565354 CCDC85AQ96PX6 553 aaPredicted RBP21.7■■□□□ 1.06
CLN3-217ENST00000565354 ZIC5Q96T25 663 aa21.7■■□□□ 1.06
CLN3-217ENST00000565354 SHTN1A0MZ66 631 aa21.69■■□□□ 1.06
CLN3-217ENST00000565354 YDJCA8MPS7 323 aa21.69■■□□□ 1.06
CLN3-217ENST00000565354 H7C1D1 291 aa21.69■■□□□ 1.06
CLN3-217ENST00000565354 TRIM27P14373 513 aa21.69■■□□□ 1.06
CLN3-217ENST00000565354 CTSWP56202 376 aa21.69■■□□□ 1.06
CLN3-217ENST00000565354 HUNKP57058 714 aa21.69■■□□□ 1.06
CLN3-217ENST00000565354 USP48Q86UV5 1035 aa21.69■■□□□ 1.06
CLN3-217ENST00000565354 CLUAP1Q96AJ1 413 aa21.69■■□□□ 1.06
CLN3-217ENST00000565354 MICALL2Q8IY33 904 aa21.68■■□□□ 1.06
CLN3-217ENST00000565354 DUOX1Q9NRD9 1551 aa21.68■■□□□ 1.06
CLN3-217ENST00000565354 LRRC37AA6NMS7 1700 aa21.68■■□□□ 1.06
CLN3-217ENST00000565354 CASP7P55210 303 aa21.67■■□□□ 1.06
CLN3-217ENST00000565354 GRAPQ13588 217 aa21.67■■□□□ 1.06
CLN3-217ENST00000565354 GRAPLQ8TC17 118 aaPredicted RBP21.67■■□□□ 1.06
CLN3-217ENST00000565354 CHMP3Q9Y3E7 222 aa21.67■■□□□ 1.06
CLN3-217ENST00000565354 MYH3P11055 1940 aa21.67■■□□□ 1.06
CLN3-217ENST00000565354 AKAP11Q9UKA4 1901 aa21.67■■□□□ 1.06
CLN3-217ENST00000565354 PLA2G12BQ9BX93 195 aa21.66■■□□□ 1.06
CLN3-217ENST00000565354 DLK2Q6UY11 383 aa21.65■■□□□ 1.06
CLN3-217ENST00000565354 TMC4Q7Z404 712 aa21.65■■□□□ 1.06
CLN3-217ENST00000565354 DZIP1LQ8IYY4 767 aaKnown RBP21.65■■□□□ 1.06
CLN3-217ENST00000565354 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.65■■□□□ 1.06
CLN3-217ENST00000565354 DPF2Q92785 391 aa21.65■■□□□ 1.06
CLN3-217ENST00000565354 TNNQ9UQP3 1299 aa21.65■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms