RNA–Protein interactions for RNA: ENST00000564641.1

CHD9-212, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 4

Gene CHD9, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-212ENST00000564641 TTC39BQ5VTQ0 682 aaPredicted RBP8.84□□□□□ -0.99
CHD9-212ENST00000564641 NSUN5Q96P11 429 aaKnown RBP8.84□□□□□ -0.99
CHD9-212ENST00000564641 MUC3BQ9H195 1237 aa8.84□□□□□ -0.99
CHD9-212ENST00000564641 J3QW42 95 aa8.83□□□□□ -1
CHD9-212ENST00000564641 FAM26DQ5JW98 314 aa8.83□□□□□ -1
CHD9-212ENST00000564641 PDE12Q6L8Q7 609 aaKnown RBP8.83□□□□□ -1
CHD9-212ENST00000564641 CCDC82Q8N4S0 544 aa8.83□□□□□ -1
CHD9-212ENST00000564641 SPACA7Q96KW9 195 aa8.83□□□□□ -1
CHD9-212ENST00000564641 H2AFB1P0C5Y9 115 aa8.82□□□□□ -1
CHD9-212ENST00000564641 H2AFB2P0C5Z0 115 aa8.82□□□□□ -1
CHD9-212ENST00000564641 PCSK2P16519 638 aa8.82□□□□□ -1
CHD9-212ENST00000564641 HYAL2Q12891 473 aa8.82□□□□□ -1
CHD9-212ENST00000564641 SHISA2Q6UWI4 295 aa8.82□□□□□ -1
CHD9-212ENST00000564641 HELQQ8TDG4 1101 aa8.82□□□□□ -1
CHD9-212ENST00000564641 GPR152Q8TDT2 470 aa8.82□□□□□ -1
CHD9-212ENST00000564641 SLAIN2Q9P270 581 aa8.82□□□□□ -1
CHD9-212ENST00000564641 ABI2Q9NYB9 513 aaPredicted RBP8.81□□□□□ -1
CHD9-212ENST00000564641 MTMR7Q9Y216 660 aa8.81□□□□□ -1
CHD9-212ENST00000564641 ZBTB39O15060 712 aa8.8□□□□□ -1
CHD9-212ENST00000564641 DYRK3O43781 588 aa8.8□□□□□ -1
CHD9-212ENST00000564641 SCNN1AP37088 669 aa8.8□□□□□ -1
CHD9-212ENST00000564641 GDF6Q6KF10 455 aaPredicted RBP8.8□□□□□ -1
CHD9-212ENST00000564641 IL22RA1Q8N6P7 574 aa8.8□□□□□ -1
CHD9-212ENST00000564641 SEPT3Q9UH03 358 aa8.8□□□□□ -1
CHD9-212ENST00000564641 TTC16Q8NEE8 873 aa8.79□□□□□ -1
CHD9-212ENST00000564641 DLL1O00548 723 aa8.78□□□□□ -1
CHD9-212ENST00000564641 SMNDC1O75940 238 aaKnown RBP eCLIP8.78□□□□□ -1
CHD9-212ENST00000564641 SSFA2P28290 1259 aa8.78□□□□□ -1
CHD9-212ENST00000564641 NOM1Q5C9Z4 860 aaKnown RBP8.78□□□□□ -1
CHD9-212ENST00000564641 ALKBH2Q6NS38 261 aa8.78□□□□□ -1
CHD9-212ENST00000564641 NUDT16Q96DE0 195 aaKnown RBP8.78□□□□□ -1
CHD9-212ENST00000564641 MRPL18Q9H0U6 180 aaKnown RBP8.78□□□□□ -1
CHD9-212ENST00000564641 PPME1Q9Y570 386 aa8.78□□□□□ -1
CHD9-212ENST00000564641 TMEM88BA6NKF7 163 aa8.77□□□□□ -1.01
CHD9-212ENST00000564641 DEAF1O75398 565 aaPredicted RBP8.77□□□□□ -1.01
CHD9-212ENST00000564641 KIF4AO95239 1232 aa8.77□□□□□ -1.01
CHD9-212ENST00000564641 ITGB7P26010 798 aa8.77□□□□□ -1.01
CHD9-212ENST00000564641 XKR5Q6UX68 686 aa8.77□□□□□ -1.01
CHD9-212ENST00000564641 ZNF438Q7Z4V0 828 aa8.77□□□□□ -1.01
CHD9-212ENST00000564641 WFDC12Q8WWY7 111 aa8.77□□□□□ -1.01
CHD9-212ENST00000564641 TP53INP1Q96A56 240 aa8.77□□□□□ -1.01
CHD9-212ENST00000564641 ELP3Q9H9T3 547 aa8.77□□□□□ -1.01
CHD9-212ENST00000564641 C14orf37Q86TY3 774 aa8.76□□□□□ -1.01
CHD9-212ENST00000564641 TMEM130Q8N3G9 435 aa8.76□□□□□ -1.01
CHD9-212ENST00000564641 SSBP4Q9BWG4 385 aaPredicted RBP8.76□□□□□ -1.01
CHD9-212ENST00000564641 FAM177BA6PVY3 158 aa8.75□□□□□ -1.01
CHD9-212ENST00000564641 MZF1P28698 734 aaPredicted RBP8.75□□□□□ -1.01
CHD9-212ENST00000564641 ERICH6Q7L0X2 663 aa8.75□□□□□ -1.01
CHD9-212ENST00000564641 NCAPG2Q86XI2 1143 aa8.75□□□□□ -1.01
CHD9-212ENST00000564641 Q8N3U1 123 aa8.75□□□□□ -1.01
CHD9-212ENST00000564641 GTF3C2Q8WUA4 911 aaPredicted RBP8.75□□□□□ -1.01
CHD9-212ENST00000564641 PMEPA1Q969W9 287 aa8.75□□□□□ -1.01
CHD9-212ENST00000564641 TRIM33Q9UPN9 1127 aa8.75□□□□□ -1.01
CHD9-212ENST00000564641 IREB2P48200 963 aaKnown RBP8.74□□□□□ -1.01
CHD9-212ENST00000564641 ZMYM1Q5SVZ6 1142 aa8.74□□□□□ -1.01
CHD9-212ENST00000564641 CEP135Q66GS9 1140 aa8.74□□□□□ -1.01
CHD9-212ENST00000564641 AKTIPQ9H8T0 292 aa8.74□□□□□ -1.01
CHD9-212ENST00000564641 NOS3P29474 1203 aa8.73□□□□□ -1.01
CHD9-212ENST00000564641 USP5P45974 858 aa8.73□□□□□ -1.01
CHD9-212ENST00000564641 DNM1Q05193 864 aaKnown RBP8.73□□□□□ -1.01
CHD9-212ENST00000564641 SETDB1Q15047 1291 aa8.73□□□□□ -1.01
CHD9-212ENST00000564641 PRSS36Q5K4E3 855 aa8.73□□□□□ -1.01
CHD9-212ENST00000564641 COL13A1Q5TAT6 717 aaPredicted RBP8.73□□□□□ -1.01
CHD9-212ENST00000564641 ATCAYQ86WG3 371 aa8.73□□□□□ -1.01
CHD9-212ENST00000564641 EDEM1Q92611 657 aa8.73□□□□□ -1.01
CHD9-212ENST00000564641 PBX4Q9BYU1 374 aa8.73□□□□□ -1.01
CHD9-212ENST00000564641 TMEM63CQ9P1W3 806 aa8.73□□□□□ -1.01
CHD9-212ENST00000564641 FAM13AO94988 1023 aa8.72□□□□□ -1.01
CHD9-212ENST00000564641 PDGFAP04085 211 aa8.72□□□□□ -1.01
CHD9-212ENST00000564641 NPR3P17342 541 aa8.72□□□□□ -1.01
CHD9-212ENST00000564641 CDC27P30260 824 aa8.72□□□□□ -1.01
CHD9-212ENST00000564641 EIF1AXP47813 144 aaKnown RBP8.72□□□□□ -1.01
CHD9-212ENST00000564641 EHHADHQ08426 723 aa8.72□□□□□ -1.01
CHD9-212ENST00000564641 SF3B2Q13435 895 aaKnown RBP8.72□□□□□ -1.01
CHD9-212ENST00000564641 B4GALNT3Q6L9W6 998 aa8.72□□□□□ -1.01
CHD9-212ENST00000564641 FAM117BQ6P1L5 589 aa8.72□□□□□ -1.01
CHD9-212ENST00000564641 CEP120Q8N960 986 aa8.72□□□□□ -1.01
CHD9-212ENST00000564641 C1orf115Q9H7X2 142 aa8.72□□□□□ -1.01
CHD9-212ENST00000564641 PTPRAP18433 802 aa8.71□□□□□ -1.02
CHD9-212ENST00000564641 CES1P23141 567 aa8.71□□□□□ -1.02
CHD9-212ENST00000564641 MPSTP25325 297 aa8.71□□□□□ -1.02
CHD9-212ENST00000564641 ATP11AP98196 1134 aa8.71□□□□□ -1.02
CHD9-212ENST00000564641 XP32Q5T750 250 aa8.71□□□□□ -1.02
CHD9-212ENST00000564641 SLC51AQ86UW1 340 aa8.71□□□□□ -1.02
CHD9-212ENST00000564641 RASSF4Q9H2L5 321 aa8.71□□□□□ -1.02
CHD9-212ENST00000564641 USTQ9Y2C2 406 aa8.71□□□□□ -1.02
CHD9-212ENST00000564641 F8W735 103 aaPredicted RBP8.7□□□□□ -1.02
CHD9-212ENST00000564641 C8orf34Q49A92 452 aa8.7□□□□□ -1.02
CHD9-212ENST00000564641 DZIP1LQ8IYY4 767 aaKnown RBP8.7□□□□□ -1.02
CHD9-212ENST00000564641 KLHL23Q8NBE8 558 aa8.7□□□□□ -1.02
CHD9-212ENST00000564641 SALL4Q9UJQ4 1053 aa8.7□□□□□ -1.02
CHD9-212ENST00000564641 CYP2E1P05181 493 aaPredicted RBP8.69□□□□□ -1.02
CHD9-212ENST00000564641 AAMPQ13685 434 aa8.69□□□□□ -1.02
CHD9-212ENST00000564641 WNT8BQ93098 351 aa8.69□□□□□ -1.02
CHD9-212ENST00000564641 LACRTQ9GZZ8 138 aa8.69□□□□□ -1.02
CHD9-212ENST00000564641 LINC01387J3KSC0 135 aa8.68□□□□□ -1.02
CHD9-212ENST00000564641 CD68P34810 354 aaPredicted RBP8.68□□□□□ -1.02
CHD9-212ENST00000564641 CABP4P57796 275 aa8.68□□□□□ -1.02
CHD9-212ENST00000564641 FKBP4Q02790 459 aaKnown RBP eCLIP8.68□□□□□ -1.02
CHD9-212ENST00000564641 ADAM19Q9H013 955 aa8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 69.2 ms