RNA–Protein interactions for RNA: ENST00000563911.5

HERPUD1-208, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

TSL 3

Gene HERPUD1, Length 844 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-208ENST00000563911 IDH3AP50213 366 aa9.28□□□□□ -0.92
HERPUD1-208ENST00000563911 IER5Q5VY09 327 aa9.28□□□□□ -0.92
HERPUD1-208ENST00000563911 GGT6Q6P531 493 aa9.28□□□□□ -0.92
HERPUD1-208ENST00000563911 NPAS4Q8IUM7 802 aa9.28□□□□□ -0.92
HERPUD1-208ENST00000563911 TTC16Q8NEE8 873 aa9.28□□□□□ -0.92
HERPUD1-208ENST00000563911 BCL2L13Q9BXK5 485 aa9.28□□□□□ -0.92
HERPUD1-208ENST00000563911 SENP2Q9HC62 589 aa9.28□□□□□ -0.92
HERPUD1-208ENST00000563911 MROH2AA6NES4 1674 aa9.28□□□□□ -0.92
HERPUD1-208ENST00000563911 NEURL4Q96JN8 1562 aa9.28□□□□□ -0.92
HERPUD1-208ENST00000563911 CDC42BPAQ5VT25 1732 aa9.28□□□□□ -0.92
HERPUD1-208ENST00000563911 ZNF142P52746 1687 aaPredicted RBP9.27□□□□□ -0.93
HERPUD1-208ENST00000563911 PDGFAP04085 211 aa9.27□□□□□ -0.93
HERPUD1-208ENST00000563911 USP5P45974 858 aa9.27□□□□□ -0.93
HERPUD1-208ENST00000563911 PDE3BQ13370 1112 aa9.27□□□□□ -0.93
HERPUD1-208ENST00000563911 RIPOR1Q6ZS17 1223 aa9.27□□□□□ -0.93
HERPUD1-208ENST00000563911 BTLAQ7Z6A9 289 aa9.27□□□□□ -0.93
HERPUD1-208ENST00000563911 PIK3R5Q8WYR1 880 aa9.27□□□□□ -0.93
HERPUD1-208ENST00000563911 CRISPLD1Q9H336 500 aa9.27□□□□□ -0.93
HERPUD1-208ENST00000563911 DMGDHQ9UI17 866 aaKnown RBP9.27□□□□□ -0.93
HERPUD1-208ENST00000563911 SPAG9O60271 1321 aaKnown RBP9.27□□□□□ -0.93
HERPUD1-208ENST00000563911 ZNF644Q9H582 1327 aaPredicted RBP9.27□□□□□ -0.93
HERPUD1-208ENST00000563911 DNMT1P26358 1616 aaKnown RBP9.27□□□□□ -0.93
HERPUD1-208ENST00000563911 SYCP2Q9BX26 1530 aa9.26□□□□□ -0.93
HERPUD1-208ENST00000563911 GPATCH8Q9UKJ3 1502 aaKnown RBP9.26□□□□□ -0.93
HERPUD1-208ENST00000563911 PLXNC1O60486 1568 aa9.26□□□□□ -0.93
HERPUD1-208ENST00000563911 SENP3-EIF4A1A0A087X0R7 540 aa9.26□□□□□ -0.93
HERPUD1-208ENST00000563911 OPLAHO14841 1288 aa9.26□□□□□ -0.93
HERPUD1-208ENST00000563911 PTSQ03393 145 aa9.26□□□□□ -0.93
HERPUD1-208ENST00000563911 KIFC2Q96AC6 838 aa9.26□□□□□ -0.93
HERPUD1-208ENST00000563911 NUDT16Q96DE0 195 aaKnown RBP9.26□□□□□ -0.93
HERPUD1-208ENST00000563911 CEP63Q96MT8 703 aa9.26□□□□□ -0.93
HERPUD1-208ENST00000563911 SHANK2Q9UPX8 1470 aa9.26□□□□□ -0.93
HERPUD1-208ENST00000563911 CLIP1P30622 1438 aa9.25□□□□□ -0.93
HERPUD1-208ENST00000563911 ARSDP51689 593 aa9.25□□□□□ -0.93
HERPUD1-208ENST00000563911 C8orf34Q49A92 452 aa9.25□□□□□ -0.93
HERPUD1-208ENST00000563911 EFHC2Q5JST6 749 aa9.25□□□□□ -0.93
HERPUD1-208ENST00000563911 DMRTB1Q96MA1 342 aa9.25□□□□□ -0.93
HERPUD1-208ENST00000563911 VWDEQ8N2E2 1590 aa9.24□□□□□ -0.93
HERPUD1-208ENST00000563911 A2ML1A8K2U0 1454 aa9.24□□□□□ -0.93
HERPUD1-208ENST00000563911 A2MP01023 1474 aa9.24□□□□□ -0.93
HERPUD1-208ENST00000563911 RBM47A0AV96 593 aaKnown RBP9.24□□□□□ -0.93
HERPUD1-208ENST00000563911 INPP5BP32019 993 aa9.24□□□□□ -0.93
HERPUD1-208ENST00000563911 PLCB3Q01970 1234 aa9.24□□□□□ -0.93
HERPUD1-208ENST00000563911 NLRP8Q86W28 1048 aa9.24□□□□□ -0.93
HERPUD1-208ENST00000563911 GJD3Q8N144 294 aa9.24□□□□□ -0.93
HERPUD1-208ENST00000563911 GIPC2Q8TF65 315 aa9.24□□□□□ -0.93
HERPUD1-208ENST00000563911 FAM129BQ96TA1 746 aa9.24□□□□□ -0.93
HERPUD1-208ENST00000563911 USP20Q9Y2K6 914 aa9.24□□□□□ -0.93
HERPUD1-208ENST00000563911 CASKIN1Q8WXD9 1431 aa9.23□□□□□ -0.93
HERPUD1-208ENST00000563911 ATP7AQ04656 1500 aa9.23□□□□□ -0.93
HERPUD1-208ENST00000563911 SLC35F4A4IF30 521 aa9.23□□□□□ -0.93
HERPUD1-208ENST00000563911 TREHO43280 583 aa9.23□□□□□ -0.93
HERPUD1-208ENST00000563911 TOM1O60784 492 aa9.23□□□□□ -0.93
HERPUD1-208ENST00000563911 RPLP1P05386 114 aaKnown RBP9.23□□□□□ -0.93
HERPUD1-208ENST00000563911 CMTR1Q8N1G2 835 aaKnown RBP9.23□□□□□ -0.93
HERPUD1-208ENST00000563911 TRIM47Q96LD4 638 aa9.23□□□□□ -0.93
HERPUD1-208ENST00000563911 GMPR2Q9P2T1 348 aaKnown RBP9.23□□□□□ -0.93
HERPUD1-208ENST00000563911 RTCBQ9Y3I0 505 aaKnown RBP9.23□□□□□ -0.93
HERPUD1-208ENST00000563911 INO80Q9ULG1 1556 aaPredicted RBP9.23□□□□□ -0.93
HERPUD1-208ENST00000563911 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.23□□□□□ -0.93
HERPUD1-208ENST00000563911 STRCP1A6NGW2 1772 aa9.22□□□□□ -0.93
HERPUD1-208ENST00000563911 EPB42P16452 691 aa9.22□□□□□ -0.93
HERPUD1-208ENST00000563911 EAPPQ56P03 285 aaPredicted RBP9.22□□□□□ -0.93
HERPUD1-208ENST00000563911 ZNF326Q5BKZ1 582 aaKnown RBP9.22□□□□□ -0.93
HERPUD1-208ENST00000563911 Q6ZNB5 142 aa9.22□□□□□ -0.93
HERPUD1-208ENST00000563911 CCDC155Q8N6L0 562 aa9.22□□□□□ -0.93
HERPUD1-208ENST00000563911 NIF3L1Q9GZT8 377 aa9.22□□□□□ -0.93
HERPUD1-208ENST00000563911 GGNBP2Q9H3C7 697 aa9.22□□□□□ -0.93
HERPUD1-208ENST00000563911 GPR182O15218 404 aa9.21□□□□□ -0.94
HERPUD1-208ENST00000563911 TYRO3Q06418 890 aa9.21□□□□□ -0.94
HERPUD1-208ENST00000563911 EHHADHQ08426 723 aa9.21□□□□□ -0.94
HERPUD1-208ENST00000563911 LBRQ14739 615 aaKnown RBP9.21□□□□□ -0.94
HERPUD1-208ENST00000563911 COL19A1Q14993 1142 aa9.21□□□□□ -0.94
HERPUD1-208ENST00000563911 ZCCHC2Q9C0B9 1178 aaKnown RBP9.21□□□□□ -0.94
HERPUD1-208ENST00000563911 FNDC3AQ9Y2H6 1198 aaKnown RBP9.21□□□□□ -0.94
HERPUD1-208ENST00000563911 KIAA1107Q9UPP5 1409 aa9.21□□□□□ -0.94
HERPUD1-208ENST00000563911 MBD5Q9P267 1494 aa9.21□□□□□ -0.94
HERPUD1-208ENST00000563911 CPS1P31327 1500 aa9.21□□□□□ -0.94
HERPUD1-208ENST00000563911 A6NHS1 94 aa9.2□□□□□ -0.94
HERPUD1-208ENST00000563911 H7C1W4 665 aa9.2□□□□□ -0.94
HERPUD1-208ENST00000563911 P4HBP07237 508 aaKnown RBP9.2□□□□□ -0.94
HERPUD1-208ENST00000563911 ZNF16P17020 682 aaPredicted RBP9.2□□□□□ -0.94
HERPUD1-208ENST00000563911 MAPK8P45983 427 aa9.2□□□□□ -0.94
HERPUD1-208ENST00000563911 DSC3Q14574 896 aa9.2□□□□□ -0.94
HERPUD1-208ENST00000563911 FIGNL1Q6PIW4 674 aa9.2□□□□□ -0.94
HERPUD1-208ENST00000563911 NUCKS1Q9H1E3 243 aaKnown RBP9.2□□□□□ -0.94
HERPUD1-208ENST00000563911 BRD7Q9NPI1 651 aa9.2□□□□□ -0.94
HERPUD1-208ENST00000563911 LRRC7Q96NW7 1537 aa9.2□□□□□ -0.94
HERPUD1-208ENST00000563911 ATXN7O15265 892 aaPredicted RBP9.19□□□□□ -0.94
HERPUD1-208ENST00000563911 IGHA2P01877 340 aa9.19□□□□□ -0.94
HERPUD1-208ENST00000563911 SNRPBP14678 240 aaKnown RBP9.19□□□□□ -0.94
HERPUD1-208ENST00000563911 SAMD5Q5TGI4 173 aa9.19□□□□□ -0.94
HERPUD1-208ENST00000563911 FBXO33Q7Z6M2 555 aa9.19□□□□□ -0.94
HERPUD1-208ENST00000563911 TNRQ92752 1358 aa9.19□□□□□ -0.94
HERPUD1-208ENST00000563911 C11orf95C9JLR9 678 aaPredicted RBP9.18□□□□□ -0.94
HERPUD1-208ENST00000563911 E9PSI1 815 aa9.18□□□□□ -0.94
HERPUD1-208ENST00000563911 TAGLNQ01995 201 aaKnown RBP9.18□□□□□ -0.94
HERPUD1-208ENST00000563911 FMR1Q06787 632 aaKnown RBP eCLIP9.18□□□□□ -0.94
HERPUD1-208ENST00000563911 DBN1Q16643 649 aa9.18□□□□□ -0.94
HERPUD1-208ENST00000563911 DHX29Q7Z478 1369 aaKnown RBP9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 121.7 ms