RNA–Protein interactions for RNA: ENST00000563854.1

NME3-205, Transcript of NME/NM23 nucleoside diphosphate kinase 3, humanhuman

TSL 5

Gene NME3, Length 583 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME3-205ENST00000563854 SPEF2Q9C093 1822 aa22.57■■□□□ 1.2
NME3-205ENST00000563854 CDC5LQ99459 802 aaKnown RBP22.57■■□□□ 1.2
NME3-205ENST00000563854 ZC3H12CQ9C0D7 883 aaKnown RBP22.57■■□□□ 1.2
NME3-205ENST00000563854 GREM2Q9H772 168 aa22.57■■□□□ 1.2
NME3-205ENST00000563854 ZBTB12Q9Y330 459 aaPredicted RBP22.57■■□□□ 1.2
NME3-205ENST00000563854 CNTNAP1P78357 1384 aa22.56■■□□□ 1.2
NME3-205ENST00000563854 SHTN1A0MZ66 631 aa22.56■■□□□ 1.2
NME3-205ENST00000563854 PSMD14O00487 310 aa22.56■■□□□ 1.2
NME3-205ENST00000563854 HSPA1AP0DMV8 641 aaKnown RBP22.56■■□□□ 1.2
NME3-205ENST00000563854 HSPA1BP0DMV9 641 aaKnown RBP22.56■■□□□ 1.2
NME3-205ENST00000563854 FMR1Q06787 632 aaKnown RBP eCLIP22.56■■□□□ 1.2
NME3-205ENST00000563854 TTLL11Q8NHH1 800 aa22.56■■□□□ 1.2
NME3-205ENST00000563854 MYH3P11055 1940 aa22.56■■□□□ 1.2
NME3-205ENST00000563854 TRAF5O00463 557 aa22.55■■□□□ 1.2
NME3-205ENST00000563854 GCKRQ14397 625 aa22.55■■□□□ 1.2
NME3-205ENST00000563854 MICALL2Q8IY33 904 aa22.55■■□□□ 1.2
NME3-205ENST00000563854 PODXL2Q9NZ53 605 aa22.55■■□□□ 1.2
NME3-205ENST00000563854 CNOT7Q9UIV1 285 aaKnown RBP22.55■■□□□ 1.2
NME3-205ENST00000563854 ABT1Q9ULW3 272 aaKnown RBP22.55■■□□□ 1.2
NME3-205ENST00000563854 F6X3S4 739 aa22.54■■□□□ 1.2
NME3-205ENST00000563854 H7C1W4 665 aa22.54■■□□□ 1.2
NME3-205ENST00000563854 TRPM4Q8TD43 1214 aa22.54■■□□□ 1.2
NME3-205ENST00000563854 KCNQ5Q9NR82 932 aa22.54■■□□□ 1.2
NME3-205ENST00000563854 XDHP47989 1333 aa22.54■■□□□ 1.2
NME3-205ENST00000563854 H7C1D1 291 aa22.53■■□□□ 1.2
NME3-205ENST00000563854 LINS1Q8NG48 757 aa22.53■■□□□ 1.2
NME3-205ENST00000563854 PCNTO95613 3336 aa22.52■■□□□ 1.2
NME3-205ENST00000563854 CACNA1FO60840 1977 aa22.52■■□□□ 1.2
NME3-205ENST00000563854 RTL9Q8NET4 1388 aa22.51■■□□□ 1.19
NME3-205ENST00000563854 FAM161AQ3B820 660 aa22.51■■□□□ 1.19
NME3-205ENST00000563854 PAXIP1Q6ZW49 1069 aaPredicted RBP22.51■■□□□ 1.19
NME3-205ENST00000563854 ATP2B4P23634 1241 aa22.5■■□□□ 1.19
NME3-205ENST00000563854 IGHMBP2P38935 993 aaKnown RBP22.5■■□□□ 1.19
NME3-205ENST00000563854 VEGFBP49765 207 aa22.5■■□□□ 1.19
NME3-205ENST00000563854 HIRAP54198 1017 aaPredicted RBP22.5■■□□□ 1.19
NME3-205ENST00000563854 GLIS2Q9BZE0 524 aaPredicted RBP22.5■■□□□ 1.19
NME3-205ENST00000563854 ITGA6P23229 1130 aa22.49■■□□□ 1.19
NME3-205ENST00000563854 DEFB115Q30KQ5 88 aa22.49■■□□□ 1.19
NME3-205ENST00000563854 TBC1D10BQ4KMP7 808 aaPredicted RBP22.49■■□□□ 1.19
NME3-205ENST00000563854 RBM26Q5T8P6 1007 aaKnown RBP22.49■■□□□ 1.19
NME3-205ENST00000563854 SAMD7Q7Z3H4 446 aa22.49■■□□□ 1.19
NME3-205ENST00000563854 DPF2Q92785 391 aa22.49■■□□□ 1.19
NME3-205ENST00000563854 ZNF408Q9H9D4 720 aa22.49■■□□□ 1.19
NME3-205ENST00000563854 BSDC1Q9NW68 430 aaPredicted RBP22.49■■□□□ 1.19
NME3-205ENST00000563854 RPS12P25398 132 aaKnown RBP22.48■■□□□ 1.19
NME3-205ENST00000563854 CASP7P55210 303 aa22.48■■□□□ 1.19
NME3-205ENST00000563854 GRM1Q13255 1194 aa22.48■■□□□ 1.19
NME3-205ENST00000563854 MINPP1Q9UNW1 487 aa22.48■■□□□ 1.19
NME3-205ENST00000563854 CHMP3Q9Y3E7 222 aa22.48■■□□□ 1.19
NME3-205ENST00000563854 SCN9AQ15858 1988 aa22.48■■□□□ 1.19
NME3-205ENST00000563854 WTIPA6NIX2 430 aaPredicted RBP22.47■■□□□ 1.19
NME3-205ENST00000563854 RASSF10A6NK89 507 aa22.47■■□□□ 1.19
NME3-205ENST00000563854 COL13A1Q5TAT6 717 aaPredicted RBP22.47■■□□□ 1.19
NME3-205ENST00000563854 SLC4A10Q6U841 1118 aa22.47■■□□□ 1.19
NME3-205ENST00000563854 PLA2G12BQ9BX93 195 aa22.47■■□□□ 1.19
NME3-205ENST00000563854 ZNF521Q96K83 1311 aa22.47■■□□□ 1.19
NME3-205ENST00000563854 TRPM7Q96QT4 1865 aa22.47■■□□□ 1.19
NME3-205ENST00000563854 CELF2O95319 508 aaKnown RBP22.46■■□□□ 1.19
NME3-205ENST00000563854 BEND3Q5T5X7 828 aa22.46■■□□□ 1.19
NME3-205ENST00000563854 MPHOSPH8Q99549 860 aa22.46■■□□□ 1.19
NME3-205ENST00000563854 EGFRP00533 1210 aa22.45■■□□□ 1.18
NME3-205ENST00000563854 CCT4P50991 539 aaKnown RBP22.45■■□□□ 1.18
NME3-205ENST00000563854 CST9Q5W186 159 aa22.45■■□□□ 1.18
NME3-205ENST00000563854 ZC3H15Q8WU90 426 aaKnown RBP22.45■■□□□ 1.18
NME3-205ENST00000563854 FBXW7Q969H0 707 aa22.45■■□□□ 1.18
NME3-205ENST00000563854 VIL1P09327 827 aaKnown RBP22.44■■□□□ 1.18
NME3-205ENST00000563854 KIF4BQ2VIQ3 1234 aa22.44■■□□□ 1.18
NME3-205ENST00000563854 MED23Q9ULK4 1368 aa22.44■■□□□ 1.18
NME3-205ENST00000563854 WDR33Q9C0J8 1336 aaKnown RBP22.43■■□□□ 1.18
NME3-205ENST00000563854 ANKRD18BA2A2Z9 1011 aa22.43■■□□□ 1.18
NME3-205ENST00000563854 CSF1RP07333 972 aa22.43■■□□□ 1.18
NME3-205ENST00000563854 RSBN1LQ6PCB5 846 aaPredicted RBP22.43■■□□□ 1.18
NME3-205ENST00000563854 CDC37L1Q7L3B6 337 aa22.43■■□□□ 1.18
NME3-205ENST00000563854 USP48Q86UV5 1035 aa22.43■■□□□ 1.18
NME3-205ENST00000563854 AIDAQ96BJ3 306 aa22.43■■□□□ 1.18
NME3-205ENST00000563854 PGAP2Q9UHJ9 254 aa22.43■■□□□ 1.18
NME3-205ENST00000563854 KCNJ4P48050 445 aa22.42■■□□□ 1.18
NME3-205ENST00000563854 C9orf78Q9NZ63 289 aaPredicted RBP22.42■■□□□ 1.18
NME3-205ENST00000563854 USP17L3A6NCW0 530 aa22.41■■□□□ 1.18
NME3-205ENST00000563854 USP17L4A6NCW7 530 aa22.41■■□□□ 1.18
NME3-205ENST00000563854 E9PSI1 815 aa22.41■■□□□ 1.18
NME3-205ENST00000563854 GRM8O00222 908 aa22.41■■□□□ 1.18
NME3-205ENST00000563854 FOXO4P98177 505 aa22.41■■□□□ 1.18
NME3-205ENST00000563854 IFIT5Q13325 482 aaKnown RBP22.41■■□□□ 1.18
NME3-205ENST00000563854 CYP4F22Q6NT55 531 aa22.41■■□□□ 1.18
NME3-205ENST00000563854 DLK2Q6UY11 383 aa22.41■■□□□ 1.18
NME3-205ENST00000563854 USP17L1Q7RTZ2 530 aa22.41■■□□□ 1.18
NME3-205ENST00000563854 ANKRD2Q9GZV1 360 aa22.41■■□□□ 1.18
NME3-205ENST00000563854 TLL2Q9Y6L7 1015 aa22.41■■□□□ 1.18
NME3-205ENST00000563854 ZNF804BA4D1E1 1349 aa22.4■■□□□ 1.18
NME3-205ENST00000563854 FOXN1O15353 648 aa22.4■■□□□ 1.18
NME3-205ENST00000563854 KRT26Q7Z3Y9 468 aa22.4■■□□□ 1.18
NME3-205ENST00000563854 PODNQ7Z5L7 613 aa22.4■■□□□ 1.18
NME3-205ENST00000563854 DCPSQ96C86 337 aaKnown RBP22.4■■□□□ 1.18
NME3-205ENST00000563854 CAPNS2Q96L46 248 aa22.4■■□□□ 1.18
NME3-205ENST00000563854 SRCIN1Q9C0H9 1055 aa22.4■■□□□ 1.18
NME3-205ENST00000563854 LEMD3Q9Y2U8 911 aa22.4■■□□□ 1.18
NME3-205ENST00000563854 PSME4Q14997 1843 aa22.4■■□□□ 1.18
NME3-205ENST00000563854 ADM5C9JUS6 153 aa22.39■■□□□ 1.17
NME3-205ENST00000563854 KLRK1P26718 216 aa22.39■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms