RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 VAMP4O75379 141 aa22.07■■□□□ 1.12
VPS9D1-203ENST00000563798 FMR1Q06787 632 aaKnown RBP eCLIP22.07■■□□□ 1.12
VPS9D1-203ENST00000563798 ANKRD18AQ8IVF6 992 aa22.07■■□□□ 1.12
VPS9D1-203ENST00000563798 TTLL11Q8NHH1 800 aa22.07■■□□□ 1.12
VPS9D1-203ENST00000563798 ZC3H12CQ9C0D7 883 aaKnown RBP22.07■■□□□ 1.12
VPS9D1-203ENST00000563798 GGA1Q9UJY5 639 aa22.07■■□□□ 1.12
VPS9D1-203ENST00000563798 TRAF5O00463 557 aa22.06■■□□□ 1.12
VPS9D1-203ENST00000563798 FLIIQ13045 1269 aa22.06■■□□□ 1.12
VPS9D1-203ENST00000563798 CWF19L2Q2TBE0 894 aaKnown RBP22.06■■□□□ 1.12
VPS9D1-203ENST00000563798 MICALL2Q8IY33 904 aa22.06■■□□□ 1.12
VPS9D1-203ENST00000563798 TRPM4Q8TD43 1214 aa22.06■■□□□ 1.12
VPS9D1-203ENST00000563798 CDC5LQ99459 802 aaKnown RBP22.06■■□□□ 1.12
VPS9D1-203ENST00000563798 WBP1LQ9NX94 342 aa22.06■■□□□ 1.12
VPS9D1-203ENST00000563798 ANKIB1Q9P2G1 1089 aa22.06■■□□□ 1.12
VPS9D1-203ENST00000563798 ABT1Q9ULW3 272 aaKnown RBP22.06■■□□□ 1.12
VPS9D1-203ENST00000563798 TRPM7Q96QT4 1865 aa22.06■■□□□ 1.12
VPS9D1-203ENST00000563798 XDHP47989 1333 aa22.06■■□□□ 1.12
VPS9D1-203ENST00000563798 UFL1O94874 794 aa22.05■■□□□ 1.12
VPS9D1-203ENST00000563798 DOK7Q18PE1 504 aa22.05■■□□□ 1.12
VPS9D1-203ENST00000563798 PLA2G12BQ9BX93 195 aa22.05■■□□□ 1.12
VPS9D1-203ENST00000563798 ZBTB12Q9Y330 459 aaPredicted RBP22.05■■□□□ 1.12
VPS9D1-203ENST00000563798 TLL2Q9Y6L7 1015 aa22.05■■□□□ 1.12
VPS9D1-203ENST00000563798 ZNF609O15014 1411 aa22.05■■□□□ 1.12
VPS9D1-203ENST00000563798 WDR33Q9C0J8 1336 aaKnown RBP22.05■■□□□ 1.12
VPS9D1-203ENST00000563798 SHTN1A0MZ66 631 aa22.04■■□□□ 1.12
VPS9D1-203ENST00000563798 VIL1P09327 827 aaKnown RBP22.04■■□□□ 1.12
VPS9D1-203ENST00000563798 CDC37L1Q7L3B6 337 aa22.04■■□□□ 1.12
VPS9D1-203ENST00000563798 GPR101Q96P66 508 aaPredicted RBP22.04■■□□□ 1.12
VPS9D1-203ENST00000563798 CCDC85AQ96PX6 553 aaPredicted RBP22.04■■□□□ 1.12
VPS9D1-203ENST00000563798 KCNQ5Q9NR82 932 aa22.04■■□□□ 1.12
VPS9D1-203ENST00000563798 BSDC1Q9NW68 430 aaPredicted RBP22.04■■□□□ 1.12
VPS9D1-203ENST00000563798 CACNA1FO60840 1977 aa22.04■■□□□ 1.12
VPS9D1-203ENST00000563798 FOXN1O15353 648 aa22.03■■□□□ 1.12
VPS9D1-203ENST00000563798 ATP2B4P23634 1241 aa22.03■■□□□ 1.12
VPS9D1-203ENST00000563798 GCKRQ14397 625 aa22.03■■□□□ 1.12
VPS9D1-203ENST00000563798 LINS1Q8NG48 757 aa22.03■■□□□ 1.12
VPS9D1-203ENST00000563798 DNAAF4Q8WXU2 420 aa22.03■■□□□ 1.12
VPS9D1-203ENST00000563798 GLIS2Q9BZE0 524 aaPredicted RBP22.03■■□□□ 1.12
VPS9D1-203ENST00000563798 CASP7P55210 303 aa22.02■■□□□ 1.12
VPS9D1-203ENST00000563798 EXOSC9Q06265 439 aaKnown RBP22.02■■□□□ 1.12
VPS9D1-203ENST00000563798 TNS4Q8IZW8 715 aa22.02■■□□□ 1.12
VPS9D1-203ENST00000563798 HHIPL1Q96JK4 782 aa22.02■■□□□ 1.12
VPS9D1-203ENST00000563798 GREM2Q9H772 168 aa22.02■■□□□ 1.12
VPS9D1-203ENST00000563798 PRDM10Q9NQV6 1147 aa22.02■■□□□ 1.12
VPS9D1-203ENST00000563798 THSD7BQ9C0I4 1608 aa22.02■■□□□ 1.11
VPS9D1-203ENST00000563798 ECE1P42892 770 aa22.01■■□□□ 1.11
VPS9D1-203ENST00000563798 FKBP5Q13451 457 aaPredicted RBP22.01■■□□□ 1.11
VPS9D1-203ENST00000563798 UBE3BQ7Z3V4 1068 aa22.01■■□□□ 1.11
VPS9D1-203ENST00000563798 MYH3P11055 1940 aa22.01■■□□□ 1.11
VPS9D1-203ENST00000563798 SCN9AQ15858 1988 aa22■■□□□ 1.11
VPS9D1-203ENST00000563798 CTCFP49711 727 aaPredicted RBP22■■□□□ 1.11
VPS9D1-203ENST00000563798 MAP2K1Q02750 393 aaPredicted RBP22■■□□□ 1.11
VPS9D1-203ENST00000563798 SAMD7Q7Z3H4 446 aa22■■□□□ 1.11
VPS9D1-203ENST00000563798 SAPCD2Q86UD0 394 aa22■■□□□ 1.11
VPS9D1-203ENST00000563798 AIDAQ96BJ3 306 aa22■■□□□ 1.11
VPS9D1-203ENST00000563798 CAPNS2Q96L46 248 aa22■■□□□ 1.11
VPS9D1-203ENST00000563798 MYH16Q9H6N6 1097 aa22■■□□□ 1.11
VPS9D1-203ENST00000563798 SPINK5Q9NQ38 1064 aaPredicted RBP22■■□□□ 1.11
VPS9D1-203ENST00000563798 MINPP1Q9UNW1 487 aa22■■□□□ 1.11
VPS9D1-203ENST00000563798 SALL2Q9Y467 1007 aaPredicted RBP22■■□□□ 1.11
VPS9D1-203ENST00000563798 CELF2O95319 508 aaKnown RBP21.99■■□□□ 1.11
VPS9D1-203ENST00000563798 CSF1RP07333 972 aa21.99■■□□□ 1.11
VPS9D1-203ENST00000563798 PODNQ7Z5L7 613 aa21.99■■□□□ 1.11
VPS9D1-203ENST00000563798 AGBL3Q8NEM8 1001 aa21.99■■□□□ 1.11
VPS9D1-203ENST00000563798 MED23Q9ULK4 1368 aa21.99■■□□□ 1.11
VPS9D1-203ENST00000563798 G3V3G9 751 aa21.98■■□□□ 1.11
VPS9D1-203ENST00000563798 EGFRP00533 1210 aa21.98■■□□□ 1.11
VPS9D1-203ENST00000563798 ZNF280AP59817 542 aaPredicted RBP21.98■■□□□ 1.11
VPS9D1-203ENST00000563798 DCAF8Q5TAQ9 597 aa21.98■■□□□ 1.11
VPS9D1-203ENST00000563798 TBC1D10BQ4KMP7 808 aaPredicted RBP21.97■■□□□ 1.11
VPS9D1-203ENST00000563798 RSBN1LQ6PCB5 846 aaPredicted RBP21.97■■□□□ 1.11
VPS9D1-203ENST00000563798 GMLQ99445 158 aa21.97■■□□□ 1.11
VPS9D1-203ENST00000563798 PSME4Q14997 1843 aa21.96■■□□□ 1.11
VPS9D1-203ENST00000563798 MAP2K2P36507 400 aa21.96■■□□□ 1.11
VPS9D1-203ENST00000563798 CYP4F22Q6NT55 531 aa21.96■■□□□ 1.11
VPS9D1-203ENST00000563798 CCT4P50991 539 aaKnown RBP21.95■■□□□ 1.1
VPS9D1-203ENST00000563798 BEND3Q5T5X7 828 aa21.95■■□□□ 1.1
VPS9D1-203ENST00000563798 USP48Q86UV5 1035 aa21.95■■□□□ 1.1
VPS9D1-203ENST00000563798 FAM9BQ8IZU0 186 aa21.95■■□□□ 1.1
VPS9D1-203ENST00000563798 LEMD3Q9Y2U8 911 aa21.95■■□□□ 1.1
VPS9D1-203ENST00000563798 ZNF521Q96K83 1311 aa21.95■■□□□ 1.1
VPS9D1-203ENST00000563798 WTIPA6NIX2 430 aaPredicted RBP21.94■■□□□ 1.1
VPS9D1-203ENST00000563798 ITGA6P23229 1130 aa21.94■■□□□ 1.1
VPS9D1-203ENST00000563798 IGHMBP2P38935 993 aaKnown RBP21.94■■□□□ 1.1
VPS9D1-203ENST00000563798 KIF4BQ2VIQ3 1234 aa21.94■■□□□ 1.1
VPS9D1-203ENST00000563798 KRT26Q7Z3Y9 468 aa21.94■■□□□ 1.1
VPS9D1-203ENST00000563798 DCPSQ96C86 337 aaKnown RBP21.94■■□□□ 1.1
VPS9D1-203ENST00000563798 USP17L3A6NCW0 530 aa21.93■■□□□ 1.1
VPS9D1-203ENST00000563798 USP17L4A6NCW7 530 aa21.93■■□□□ 1.1
VPS9D1-203ENST00000563798 FAM161AQ3B820 660 aa21.93■■□□□ 1.1
VPS9D1-203ENST00000563798 USP17L1Q7RTZ2 530 aa21.93■■□□□ 1.1
VPS9D1-203ENST00000563798 ANKRD2Q9GZV1 360 aa21.93■■□□□ 1.1
VPS9D1-203ENST00000563798 HSPA8P11142 646 aaKnown RBP21.92■■□□□ 1.1
VPS9D1-203ENST00000563798 RBM26Q5T8P6 1007 aaKnown RBP21.92■■□□□ 1.1
VPS9D1-203ENST00000563798 PAXIP1Q6ZW49 1069 aaPredicted RBP21.92■■□□□ 1.1
VPS9D1-203ENST00000563798 COA1Q9GZY4 146 aa21.92■■□□□ 1.1
VPS9D1-203ENST00000563798 USP17L8P0C7I0 530 aa21.91■■□□□ 1.1
VPS9D1-203ENST00000563798 LBX1P52954 281 aa21.91■■□□□ 1.1
VPS9D1-203ENST00000563798 FOXO4P98177 505 aa21.91■■□□□ 1.1
VPS9D1-203ENST00000563798 SPEF2Q9C093 1822 aa21.9■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms