RNA–Protein interactions for RNA: ENST00000562670.5

CLK3-209, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 544 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-209ENST00000562670 BRIP1Q9BX63 1249 aa17.07■□□□□ 0.32
CLK3-209ENST00000562670 BACH2Q9BYV9 841 aa17.07■□□□□ 0.32
CLK3-209ENST00000562670 SEC31BQ9NQW1 1179 aa17.07■□□□□ 0.32
CLK3-209ENST00000562670 BSDC1Q9NW68 430 aaPredicted RBP17.07■□□□□ 0.32
CLK3-209ENST00000562670 HOXA10P31260 410 aaPredicted RBP17.06■□□□□ 0.32
CLK3-209ENST00000562670 METTL24Q5JXM2 366 aa17.06■□□□□ 0.32
CLK3-209ENST00000562670 DDX46Q7L014 1031 aaKnown RBP17.06■□□□□ 0.32
CLK3-209ENST00000562670 DBNLQ9UJU6 430 aaKnown RBP17.06■□□□□ 0.32
CLK3-209ENST00000562670 LRRC37AA6NMS7 1700 aa17.05■□□□□ 0.32
CLK3-209ENST00000562670 PDE8BO95263 885 aa17.05■□□□□ 0.32
CLK3-209ENST00000562670 A0A1B0GUL7 405 aa17.04■□□□□ 0.32
CLK3-209ENST00000562670 GRAPQ13588 217 aa17.04■□□□□ 0.32
CLK3-209ENST00000562670 PUM3Q15397 648 aaKnown RBP17.04■□□□□ 0.32
CLK3-209ENST00000562670 GRAPLQ8TC17 118 aaPredicted RBP17.04■□□□□ 0.32
CLK3-209ENST00000562670 COL11A2P13942 1736 aaPredicted RBP17.04■□□□□ 0.32
CLK3-209ENST00000562670 C10orf71Q711Q0 1435 aa17.04■□□□□ 0.32
CLK3-209ENST00000562670 EIF5BO60841 1220 aaKnown RBP17.03■□□□□ 0.32
CLK3-209ENST00000562670 ATP5JP18859 108 aa17.03■□□□□ 0.32
CLK3-209ENST00000562670 FGFR2P21802 821 aa17.03■□□□□ 0.32
CLK3-209ENST00000562670 RPS8P62241 208 aaKnown RBP17.03■□□□□ 0.32
CLK3-209ENST00000562670 ATP2B3Q16720 1220 aa17.03■□□□□ 0.32
CLK3-209ENST00000562670 TMC4Q7Z404 712 aa17.03■□□□□ 0.32
CLK3-209ENST00000562670 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.03■□□□□ 0.32
CLK3-209ENST00000562670 RPGRQ92834 1020 aaKnown RBP17.03■□□□□ 0.32
CLK3-209ENST00000562670 CRAMP1Q96RY5 1269 aa17.03■□□□□ 0.32
CLK3-209ENST00000562670 CCDC8Q9H0W5 538 aaPredicted RBP17.03■□□□□ 0.32
CLK3-209ENST00000562670 TLR7Q9NYK1 1049 aaKnown RBP17.03■□□□□ 0.32
CLK3-209ENST00000562670 CDC45O75419 566 aa17.02■□□□□ 0.32
CLK3-209ENST00000562670 SDSP20132 328 aa17.02■□□□□ 0.32
CLK3-209ENST00000562670 PDE6BP35913 854 aa17.02■□□□□ 0.32
CLK3-209ENST00000562670 MSL1Q68DK7 614 aa17.02■□□□□ 0.32
CLK3-209ENST00000562670 TICAM2Q86XR7 235 aa17.02■□□□□ 0.32
CLK3-209ENST00000562670 LPIN2Q92539 896 aa17.02■□□□□ 0.32
CLK3-209ENST00000562670 CELF1Q92879 486 aaKnown RBP17.02■□□□□ 0.32
CLK3-209ENST00000562670 DBNDD2Q9BQY9 259 aa17.02■□□□□ 0.32
CLK3-209ENST00000562670 RFX7Q2KHR2 1363 aa17.02■□□□□ 0.31
CLK3-209ENST00000562670 ZBTB22O15209 634 aa17.01■□□□□ 0.31
CLK3-209ENST00000562670 CHRNDQ07001 517 aa17.01■□□□□ 0.31
CLK3-209ENST00000562670 TSHZ3Q63HK5 1081 aa17.01■□□□□ 0.31
CLK3-209ENST00000562670 CCDC24Q8N4L8 307 aa17.01■□□□□ 0.31
CLK3-209ENST00000562670 RBM17Q96I25 401 aaKnown RBP17.01■□□□□ 0.31
CLK3-209ENST00000562670 ZNF512BQ96KM6 892 aaPredicted RBP17.01■□□□□ 0.31
CLK3-209ENST00000562670 KIF13BQ9NQT8 1826 aa17■□□□□ 0.31
CLK3-209ENST00000562670 TAF1P21675 1872 aa17■□□□□ 0.31
CLK3-209ENST00000562670 ANKRD2Q9GZV1 360 aa17■□□□□ 0.31
CLK3-209ENST00000562670 TSHZ2Q9NRE2 1034 aa17■□□□□ 0.31
CLK3-209ENST00000562670 MINPP1Q9UNW1 487 aa17■□□□□ 0.31
CLK3-209ENST00000562670 DLEC1Q9Y238 1755 aa17■□□□□ 0.31
CLK3-209ENST00000562670 LTBP1Q14766 1721 aa16.99■□□□□ 0.31
CLK3-209ENST00000562670 BBOX1O75936 387 aa16.99■□□□□ 0.31
CLK3-209ENST00000562670 SRGNP10124 158 aa16.99■□□□□ 0.31
CLK3-209ENST00000562670 SLC5A1P13866 664 aa16.99■□□□□ 0.31
CLK3-209ENST00000562670 NPR1P16066 1061 aa16.99■□□□□ 0.31
CLK3-209ENST00000562670 UBE4AQ14139 1066 aa16.99■□□□□ 0.31
CLK3-209ENST00000562670 CNTROBQ8N137 903 aa16.99■□□□□ 0.31
CLK3-209ENST00000562670 XAGE2Q96GT9 111 aa16.99■□□□□ 0.31
CLK3-209ENST00000562670 AK9Q5TCS8 1911 aa16.99■□□□□ 0.31
CLK3-209ENST00000562670 IFIT1P09914 478 aaKnown RBP16.98■□□□□ 0.31
CLK3-209ENST00000562670 TIMM10P62072 90 aa16.98■□□□□ 0.31
CLK3-209ENST00000562670 EVI5LQ96CN4 794 aa16.98■□□□□ 0.31
CLK3-209ENST00000562670 NEUROD6Q96NK8 337 aa16.98■□□□□ 0.31
CLK3-209ENST00000562670 HAUS7Q99871 368 aa16.98■□□□□ 0.31
CLK3-209ENST00000562670 MTFR1LQ9H019 292 aa16.98■□□□□ 0.31
CLK3-209ENST00000562670 BCL11AQ9H165 835 aa16.98■□□□□ 0.31
CLK3-209ENST00000562670 CCDC158Q5M9N0 1113 aa16.97■□□□□ 0.31
CLK3-209ENST00000562670 CASC1Q6TDU7 716 aa16.97■□□□□ 0.31
CLK3-209ENST00000562670 TBC1D9Q6ZT07 1266 aa16.97■□□□□ 0.31
CLK3-209ENST00000562670 MASTLQ96GX5 879 aa16.97■□□□□ 0.31
CLK3-209ENST00000562670 PDGFDQ9GZP0 370 aaPredicted RBP16.97■□□□□ 0.31
CLK3-209ENST00000562670 ARID4AP29374 1257 aaPredicted RBP16.96■□□□□ 0.31
CLK3-209ENST00000562670 STYK1Q6J9G0 422 aa16.96■□□□□ 0.31
CLK3-209ENST00000562670 ZNF804BA4D1E1 1349 aa16.96■□□□□ 0.3
CLK3-209ENST00000562670 XDHP47989 1333 aa16.96■□□□□ 0.3
CLK3-209ENST00000562670 TRIM6-TRIM34B2RNG4 842 aa16.95■□□□□ 0.3
CLK3-209ENST00000562670 UQCRFS1P1P0C7P4 283 aa16.95■□□□□ 0.3
CLK3-209ENST00000562670 ADORA1P30542 326 aa16.95■□□□□ 0.3
CLK3-209ENST00000562670 ALDH1B1P30837 517 aa16.95■□□□□ 0.3
CLK3-209ENST00000562670 LEMD3Q9Y2U8 911 aa16.95■□□□□ 0.3
CLK3-209ENST00000562670 HIP1O00291 1037 aa16.94■□□□□ 0.3
CLK3-209ENST00000562670 TTC39AQ5SRH9 613 aa16.94■□□□□ 0.3
CLK3-209ENST00000562670 GORABQ5T7V8 394 aa16.94■□□□□ 0.3
CLK3-209ENST00000562670 C15orf52Q6ZUT6 534 aaKnown RBP16.94■□□□□ 0.3
CLK3-209ENST00000562670 HELBQ8NG08 1087 aaPredicted RBP16.94■□□□□ 0.3
CLK3-209ENST00000562670 BOLA2Q9H3K6 86 aa16.94■□□□□ 0.3
CLK3-209ENST00000562670 PODXL2Q9NZ53 605 aa16.94■□□□□ 0.3
CLK3-209ENST00000562670 TAF5LO75529 589 aa16.93■□□□□ 0.3
CLK3-209ENST00000562670 CCDC102BQ68D86 513 aa16.93■□□□□ 0.3
CLK3-209ENST00000562670 AKAP11Q9UKA4 1901 aa16.93■□□□□ 0.3
CLK3-209ENST00000562670 PDS5AQ29RF7 1337 aaKnown RBP16.93■□□□□ 0.3
CLK3-209ENST00000562670 IRS2Q9Y4H2 1338 aa16.93■□□□□ 0.3
CLK3-209ENST00000562670 H0YIN7 160 aa16.92■□□□□ 0.3
CLK3-209ENST00000562670 PPEF1O14829 653 aaPredicted RBP16.92■□□□□ 0.3
CLK3-209ENST00000562670 CHMLP26374 656 aa16.92■□□□□ 0.3
CLK3-209ENST00000562670 C2CD5Q86YS7 1000 aa16.92■□□□□ 0.3
CLK3-209ENST00000562670 SP8Q8IXZ3 490 aa16.92■□□□□ 0.3
CLK3-209ENST00000562670 RILPL2Q969X0 211 aa16.92■□□□□ 0.3
CLK3-209ENST00000562670 ATP6V0A2Q9Y487 856 aa16.92■□□□□ 0.3
CLK3-209ENST00000562670 DUOX1Q9NRD9 1551 aa16.92■□□□□ 0.3
CLK3-209ENST00000562670 KIAA1551Q9HCM1 1747 aa16.92■□□□□ 0.3
CLK3-209ENST00000562670 EPB41L2O43491 1005 aaKnown RBP16.91■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms