RNA–Protein interactions for RNA: ENST00000562662.1

VPS39-206, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 526 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-206ENST00000562662 PI4K2BQ8TCG2 481 aa16.66■□□□□ 0.26
VPS39-206ENST00000562662 SLC16A10Q8TF71 515 aa16.66■□□□□ 0.26
VPS39-206ENST00000562662 CELF1Q92879 486 aaKnown RBP16.66■□□□□ 0.26
VPS39-206ENST00000562662 TTC41PQ6P2S7 1318 aa16.66■□□□□ 0.26
VPS39-206ENST00000562662 MROH5Q6ZUA9 1318 aa16.66■□□□□ 0.26
VPS39-206ENST00000562662 CACNA1SQ13698 1873 aa16.65■□□□□ 0.26
VPS39-206ENST00000562662 LRRC37AA6NMS7 1700 aa16.65■□□□□ 0.26
VPS39-206ENST00000562662 METTL24Q5JXM2 366 aa16.65■□□□□ 0.26
VPS39-206ENST00000562662 ANKRD18AQ8IVF6 992 aa16.65■□□□□ 0.26
VPS39-206ENST00000562662 MPHOSPH8Q99549 860 aa16.65■□□□□ 0.26
VPS39-206ENST00000562662 DBNLQ9UJU6 430 aaKnown RBP16.65■□□□□ 0.26
VPS39-206ENST00000562662 KIF13BQ9NQT8 1826 aa16.64■□□□□ 0.25
VPS39-206ENST00000562662 DDX46Q7L014 1031 aaKnown RBP16.64■□□□□ 0.25
VPS39-206ENST00000562662 BRIP1Q9BX63 1249 aa16.64■□□□□ 0.25
VPS39-206ENST00000562662 BSDC1Q9NW68 430 aaPredicted RBP16.64■□□□□ 0.25
VPS39-206ENST00000562662 A0A1B0GUL7 405 aa16.63■□□□□ 0.25
VPS39-206ENST00000562662 PDE8BO95263 885 aa16.63■□□□□ 0.25
VPS39-206ENST00000562662 RPS8P62241 208 aaKnown RBP16.63■□□□□ 0.25
VPS39-206ENST00000562662 DBNDD2Q9BQY9 259 aa16.63■□□□□ 0.25
VPS39-206ENST00000562662 BACH2Q9BYV9 841 aa16.63■□□□□ 0.25
VPS39-206ENST00000562662 ECHDC1Q9NTX5 307 aa16.63■□□□□ 0.25
VPS39-206ENST00000562662 AKAP2Q9Y2D5 859 aa16.63■□□□□ 0.25
VPS39-206ENST00000562662 DLEC1Q9Y238 1755 aa16.63■□□□□ 0.25
VPS39-206ENST00000562662 HOXA10P31260 410 aaPredicted RBP16.62■□□□□ 0.25
VPS39-206ENST00000562662 TIMM10P62072 90 aa16.62■□□□□ 0.25
VPS39-206ENST00000562662 CHRNDQ07001 517 aa16.62■□□□□ 0.25
VPS39-206ENST00000562662 GRAPQ13588 217 aa16.62■□□□□ 0.25
VPS39-206ENST00000562662 GRAPLQ8TC17 118 aaPredicted RBP16.62■□□□□ 0.25
VPS39-206ENST00000562662 GPATCH3Q96I76 525 aa16.62■□□□□ 0.25
VPS39-206ENST00000562662 AKAP11Q9UKA4 1901 aa16.62■□□□□ 0.25
VPS39-206ENST00000562662 GLRX3O76003 335 aaKnown RBP16.61■□□□□ 0.25
VPS39-206ENST00000562662 SDSP20132 328 aa16.61■□□□□ 0.25
VPS39-206ENST00000562662 FGFR2P21802 821 aa16.61■□□□□ 0.25
VPS39-206ENST00000562662 ATP2B3Q16720 1220 aa16.61■□□□□ 0.25
VPS39-206ENST00000562662 HELBQ8NG08 1087 aaPredicted RBP16.61■□□□□ 0.25
VPS39-206ENST00000562662 RPGRQ92834 1020 aaKnown RBP16.61■□□□□ 0.25
VPS39-206ENST00000562662 RBM17Q96I25 401 aaKnown RBP16.61■□□□□ 0.25
VPS39-206ENST00000562662 C10orf71Q711Q0 1435 aa16.61■□□□□ 0.25
VPS39-206ENST00000562662 ERC2O15083 957 aa16.6■□□□□ 0.25
VPS39-206ENST00000562662 ADORA1P30542 326 aa16.6■□□□□ 0.25
VPS39-206ENST00000562662 PDE6BP35913 854 aa16.6■□□□□ 0.25
VPS39-206ENST00000562662 NEUROD6Q96NK8 337 aa16.6■□□□□ 0.25
VPS39-206ENST00000562662 MINPP1Q9UNW1 487 aa16.6■□□□□ 0.25
VPS39-206ENST00000562662 LTBP1Q14766 1721 aa16.59■□□□□ 0.25
VPS39-206ENST00000562662 TAF5LO75529 589 aa16.59■□□□□ 0.25
VPS39-206ENST00000562662 PUM3Q15397 648 aaKnown RBP16.59■□□□□ 0.25
VPS39-206ENST00000562662 ILDR2Q71H61 639 aa16.59■□□□□ 0.25
VPS39-206ENST00000562662 XAGE2Q96GT9 111 aa16.59■□□□□ 0.25
VPS39-206ENST00000562662 CRAMP1Q96RY5 1269 aa16.59■□□□□ 0.25
VPS39-206ENST00000562662 TSHZ2Q9NRE2 1034 aa16.59■□□□□ 0.25
VPS39-206ENST00000562662 KIAA1551Q9HCM1 1747 aa16.59■□□□□ 0.25
VPS39-206ENST00000562662 SRGNP10124 158 aa16.58■□□□□ 0.24
VPS39-206ENST00000562662 ATP5JP18859 108 aa16.58■□□□□ 0.24
VPS39-206ENST00000562662 R3HDM1Q15032 1099 aaKnown RBP16.58■□□□□ 0.24
VPS39-206ENST00000562662 LPIN2Q92539 896 aa16.58■□□□□ 0.24
VPS39-206ENST00000562662 MYH13Q9UKX3 1938 aa16.58■□□□□ 0.24
VPS39-206ENST00000562662 SNAP23O00161 211 aa16.57■□□□□ 0.24
VPS39-206ENST00000562662 NPR1P16066 1061 aa16.57■□□□□ 0.24
VPS39-206ENST00000562662 MYH7P12883 1935 aa16.57■□□□□ 0.24
VPS39-206ENST00000562662 TRIM6-TRIM34B2RNG4 842 aa16.56■□□□□ 0.24
VPS39-206ENST00000562662 CDC45O75419 566 aa16.56■□□□□ 0.24
VPS39-206ENST00000562662 ZBTB7AO95365 584 aa16.56■□□□□ 0.24
VPS39-206ENST00000562662 MAP4K4O95819 1239 aaPredicted RBP16.56■□□□□ 0.24
VPS39-206ENST00000562662 SLC5A1P13866 664 aa16.56■□□□□ 0.24
VPS39-206ENST00000562662 SLC51AQ86UW1 340 aa16.56■□□□□ 0.24
VPS39-206ENST00000562662 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.56■□□□□ 0.24
VPS39-206ENST00000562662 ANKRD2Q9GZV1 360 aa16.56■□□□□ 0.24
VPS39-206ENST00000562662 MTFR1LQ9H019 292 aa16.56■□□□□ 0.24
VPS39-206ENST00000562662 BOLA2Q9H3K6 86 aa16.56■□□□□ 0.24
VPS39-206ENST00000562662 MYO5AQ9Y4I1 1855 aaKnown RBP16.56■□□□□ 0.24
VPS39-206ENST00000562662 SLX4Q8IY92 1834 aa16.56■□□□□ 0.24
VPS39-206ENST00000562662 BBOX1O75936 387 aa16.55■□□□□ 0.24
VPS39-206ENST00000562662 UBE4AQ14139 1066 aa16.55■□□□□ 0.24
VPS39-206ENST00000562662 TBC1D9Q6ZT07 1266 aa16.55■□□□□ 0.24
VPS39-206ENST00000562662 MASTLQ96GX5 879 aa16.55■□□□□ 0.24
VPS39-206ENST00000562662 IFIT1P09914 478 aaKnown RBP16.54■□□□□ 0.24
VPS39-206ENST00000562662 CCDC158Q5M9N0 1113 aa16.54■□□□□ 0.24
VPS39-206ENST00000562662 C2CD5Q86YS7 1000 aa16.54■□□□□ 0.24
VPS39-206ENST00000562662 CNTROBQ8N137 903 aa16.54■□□□□ 0.24
VPS39-206ENST00000562662 RILPL2Q969X0 211 aa16.54■□□□□ 0.24
VPS39-206ENST00000562662 HAUS7Q99871 368 aa16.54■□□□□ 0.24
VPS39-206ENST00000562662 DOCK2Q92608 1830 aa16.54■□□□□ 0.24
VPS39-206ENST00000562662 BRCA1P38398 1863 aaKnown RBP16.53■□□□□ 0.24
VPS39-206ENST00000562662 PSDA5PKW4 1024 aaPredicted RBP16.53■□□□□ 0.24
VPS39-206ENST00000562662 WTIPA6NIX2 430 aaPredicted RBP16.53■□□□□ 0.24
VPS39-206ENST00000562662 PPEF1O14829 653 aaPredicted RBP16.53■□□□□ 0.24
VPS39-206ENST00000562662 SEC24BO95487 1268 aa16.53■□□□□ 0.24
VPS39-206ENST00000562662 ALDH1B1P30837 517 aa16.53■□□□□ 0.24
VPS39-206ENST00000562662 TTC39AQ5SRH9 613 aa16.53■□□□□ 0.24
VPS39-206ENST00000562662 GORABQ5T7V8 394 aa16.53■□□□□ 0.24
VPS39-206ENST00000562662 STYK1Q6J9G0 422 aa16.53■□□□□ 0.24
VPS39-206ENST00000562662 TMC4Q7Z404 712 aa16.53■□□□□ 0.24
VPS39-206ENST00000562662 ZNF512BQ96KM6 892 aaPredicted RBP16.53■□□□□ 0.24
VPS39-206ENST00000562662 ATF5Q9Y2D1 282 aaPredicted RBP16.53■□□□□ 0.24
VPS39-206ENST00000562662 XDHP47989 1333 aa16.52■□□□□ 0.24
VPS39-206ENST00000562662 IRS2Q9Y4H2 1338 aa16.52■□□□□ 0.24
VPS39-206ENST00000562662 H0YIN7 160 aa16.52■□□□□ 0.24
VPS39-206ENST00000562662 ARID4AP29374 1257 aaPredicted RBP16.52■□□□□ 0.24
VPS39-206ENST00000562662 PHKA1P46020 1223 aa16.52■□□□□ 0.24
VPS39-206ENST00000562662 CCDC102BQ68D86 513 aa16.52■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms