RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 PCCAP05165 728 aaPredicted RBP10.93□□□□□ -0.66
VPS39-205ENST00000562258 CYP19A1P11511 503 aaPredicted RBP10.93□□□□□ -0.66
VPS39-205ENST00000562258 L1TD1Q5T7N2 865 aaKnown RBP10.93□□□□□ -0.66
VPS39-205ENST00000562258 SSH2Q76I76 1423 aa10.93□□□□□ -0.66
VPS39-205ENST00000562258 BCAMP50895 628 aa10.93□□□□□ -0.66
VPS39-205ENST00000562258 SCNN1DP51172 638 aa10.93□□□□□ -0.66
VPS39-205ENST00000562258 CCT2P78371 535 aaKnown RBP10.93□□□□□ -0.66
VPS39-205ENST00000562258 TNNI3KQ59H18 835 aa10.93□□□□□ -0.66
VPS39-205ENST00000562258 DRC7Q8IY82 874 aa10.93□□□□□ -0.66
VPS39-205ENST00000562258 DBNDD1Q9H9R9 158 aa10.93□□□□□ -0.66
VPS39-205ENST00000562258 SAP30BPQ9UHR5 308 aaKnown RBP10.93□□□□□ -0.66
VPS39-205ENST00000562258 ATP6V1DQ9Y5K8 247 aa10.93□□□□□ -0.66
VPS39-205ENST00000562258 FPGT-TNNI3KV9GXZ4 949 aa10.93□□□□□ -0.66
VPS39-205ENST00000562258 NUCB1Q02818 461 aa10.92□□□□□ -0.66
VPS39-205ENST00000562258 HDAC1Q13547 482 aaPredicted RBP10.92□□□□□ -0.66
VPS39-205ENST00000562258 DDX49Q9Y6V7 483 aaKnown RBP10.92□□□□□ -0.66
VPS39-205ENST00000562258 TMEM131LA2VDJ0 1609 aa10.92□□□□□ -0.66
VPS39-205ENST00000562258 ZGPATQ8N5A5 531 aaKnown RBP10.92□□□□□ -0.66
VPS39-205ENST00000562258 BRMS1Q9HCU9 246 aa10.92□□□□□ -0.66
VPS39-205ENST00000562258 ERBB4Q15303 1308 aa10.92□□□□□ -0.66
VPS39-205ENST00000562258 RAD17O75943 681 aa10.92□□□□□ -0.66
VPS39-205ENST00000562258 IBSPP21815 317 aaPredicted RBP10.92□□□□□ -0.66
VPS39-205ENST00000562258 MFSD14BQ5SR56 506 aa10.92□□□□□ -0.66
VPS39-205ENST00000562258 SOGA3Q5TF21 947 aa10.92□□□□□ -0.66
VPS39-205ENST00000562258 TBC1D9BQ66K14 1250 aa10.92□□□□□ -0.66
VPS39-205ENST00000562258 CHST3Q7LGC8 479 aa10.92□□□□□ -0.66
VPS39-205ENST00000562258 NBPF26B4DH59 902 aa10.91□□□□□ -0.66
VPS39-205ENST00000562258 WDHD1O75717 1129 aaPredicted RBP10.91□□□□□ -0.66
VPS39-205ENST00000562258 RABEP1Q15276 862 aa10.91□□□□□ -0.66
VPS39-205ENST00000562258 TTC22Q5TAA0 569 aa10.91□□□□□ -0.66
VPS39-205ENST00000562258 NBPF10Q6P3W6 841 aaKnown RBP10.91□□□□□ -0.66
VPS39-205ENST00000562258 FERMT3Q86UX7 667 aa10.91□□□□□ -0.66
VPS39-205ENST00000562258 MICU3Q86XE3 530 aa10.91□□□□□ -0.66
VPS39-205ENST00000562258 NBPF15Q8N660 670 aa10.91□□□□□ -0.66
VPS39-205ENST00000562258 BACH2Q9BYV9 841 aa10.91□□□□□ -0.66
VPS39-205ENST00000562258 GUCY1B3Q02153 619 aa10.91□□□□□ -0.66
VPS39-205ENST00000562258 TTLL5Q6EMB2 1281 aa10.91□□□□□ -0.66
VPS39-205ENST00000562258 MFSD6Q6ZSS7 791 aa10.91□□□□□ -0.66
VPS39-205ENST00000562258 HOMER1Q86YM7 354 aa10.91□□□□□ -0.66
VPS39-205ENST00000562258 MAGEB6P1A0A0J9YX57 407 aa10.91□□□□□ -0.66
VPS39-205ENST00000562258 ZNF853P0CG23 659 aa10.91□□□□□ -0.66
VPS39-205ENST00000562258 GSTO1P78417 241 aa10.91□□□□□ -0.66
VPS39-205ENST00000562258 CHRNDQ07001 517 aa10.91□□□□□ -0.66
VPS39-205ENST00000562258 VSIG10Q8N0Z9 540 aa10.91□□□□□ -0.66
VPS39-205ENST00000562258 LPIN2Q92539 896 aa10.91□□□□□ -0.66
VPS39-205ENST00000562258 NARFQ9UHQ1 456 aa10.91□□□□□ -0.66
VPS39-205ENST00000562258 ZC3H13Q5T200 1668 aaKnown RBP10.91□□□□□ -0.66
VPS39-205ENST00000562258 BCORL1Q5H9F3 1711 aa10.91□□□□□ -0.66
VPS39-205ENST00000562258 PRDM1O75626 825 aa10.91□□□□□ -0.66
VPS39-205ENST00000562258 ITPK1Q13572 414 aa10.91□□□□□ -0.66
VPS39-205ENST00000562258 DPY19L2Q6NUT2 758 aa10.91□□□□□ -0.66
VPS39-205ENST00000562258 AATFQ9NY61 560 aaKnown RBP eCLIP10.91□□□□□ -0.66
VPS39-205ENST00000562258 OVOS2A0A0G2JMS6 1433 aa10.9□□□□□ -0.66
VPS39-205ENST00000562258 OVOS2A0A0J9YW53 1432 aa10.9□□□□□ -0.66
VPS39-205ENST00000562258 ZAP70P43403 619 aa10.9□□□□□ -0.66
VPS39-205ENST00000562258 PDE4BQ07343 736 aa10.9□□□□□ -0.66
VPS39-205ENST00000562258 KRT32Q14532 448 aa10.9□□□□□ -0.66
VPS39-205ENST00000562258 NFIXQ14938 502 aa10.9□□□□□ -0.66
VPS39-205ENST00000562258 OVOS2Q6IE36 1432 aa10.9□□□□□ -0.66
VPS39-205ENST00000562258 CCDC129Q6ZRS4 1044 aa10.9□□□□□ -0.66
VPS39-205ENST00000562258 TEX11Q8IYF3 940 aa10.9□□□□□ -0.66
VPS39-205ENST00000562258 QRICH2Q9H0J4 1663 aa10.9□□□□□ -0.66
VPS39-205ENST00000562258 TTF2Q9UNY4 1162 aaKnown RBP10.9□□□□□ -0.66
VPS39-205ENST00000562258 ZSCAN21Q9Y5A6 473 aaPredicted RBP10.9□□□□□ -0.66
VPS39-205ENST00000562258 MBD4O95243 580 aa10.9□□□□□ -0.66
VPS39-205ENST00000562258 CHRNA5P30532 468 aa10.9□□□□□ -0.66
VPS39-205ENST00000562258 CTCFLQ8NI51 663 aaPredicted RBP10.9□□□□□ -0.66
VPS39-205ENST00000562258 NF2P35240 595 aa10.9□□□□□ -0.67
VPS39-205ENST00000562258 NMIQ13287 307 aaPredicted RBP10.9□□□□□ -0.67
VPS39-205ENST00000562258 BARGINQ6ZT62 677 aa10.9□□□□□ -0.67
VPS39-205ENST00000562258 CCDC83Q8IWF9 413 aa10.89□□□□□ -0.67
VPS39-205ENST00000562258 EAF2Q96CJ1 260 aaPredicted RBP10.89□□□□□ -0.67
VPS39-205ENST00000562258 SPON1Q9HCB6 807 aa10.89□□□□□ -0.67
VPS39-205ENST00000562258 RTN4Q9NQC3 1192 aaKnown RBP10.89□□□□□ -0.67
VPS39-205ENST00000562258 DENND2AQ9ULE3 1009 aa10.89□□□□□ -0.67
VPS39-205ENST00000562258 A0A0G2JLW4 131 aa10.89□□□□□ -0.67
VPS39-205ENST00000562258 ZYXQ15942 572 aaKnown RBP10.89□□□□□ -0.67
VPS39-205ENST00000562258 LARP1BQ659C4 914 aaKnown RBP10.89□□□□□ -0.67
VPS39-205ENST00000562258 FIBPO43427 364 aa10.89□□□□□ -0.67
VPS39-205ENST00000562258 TMEM67Q5HYA8 995 aa10.89□□□□□ -0.67
VPS39-205ENST00000562258 TTLL6Q8N841 843 aa10.89□□□□□ -0.67
VPS39-205ENST00000562258 RNF41Q9H4P4 317 aaPredicted RBP10.89□□□□□ -0.67
VPS39-205ENST00000562258 H7C1D1 291 aa10.88□□□□□ -0.67
VPS39-205ENST00000562258 TSPY3P0CV98 308 aa10.88□□□□□ -0.67
VPS39-205ENST00000562258 TSPY8P0CW00 308 aa10.88□□□□□ -0.67
VPS39-205ENST00000562258 MCMDC2Q4G0Z9 681 aa10.88□□□□□ -0.67
VPS39-205ENST00000562258 BMP2KLQ5H9B9 411 aa10.88□□□□□ -0.67
VPS39-205ENST00000562258 PTF1AQ7RTS3 328 aa10.88□□□□□ -0.67
VPS39-205ENST00000562258 NOC3LQ8WTT2 800 aaKnown RBP10.88□□□□□ -0.67
VPS39-205ENST00000562258 ARMT1Q9H993 441 aa10.88□□□□□ -0.67
VPS39-205ENST00000562258 SLC12A7Q9Y666 1083 aa10.88□□□□□ -0.67
VPS39-205ENST00000562258 KIF13AQ9H1H9 1805 aa10.88□□□□□ -0.67
VPS39-205ENST00000562258 DLGAP5Q15398 846 aa10.88□□□□□ -0.67
VPS39-205ENST00000562258 CSPP1Q1MSJ5 1256 aa10.88□□□□□ -0.67
VPS39-205ENST00000562258 ARHGAP23Q9P227 1491 aa10.88□□□□□ -0.67
VPS39-205ENST00000562258 ZFYP08048 801 aaPredicted RBP10.88□□□□□ -0.67
VPS39-205ENST00000562258 DALRD3Q5D0E6 543 aaKnown RBP10.88□□□□□ -0.67
VPS39-205ENST00000562258 SLC27A3Q5K4L6 730 aa10.88□□□□□ -0.67
VPS39-205ENST00000562258 LINC00116Q8NCU8 138 aa10.88□□□□□ -0.67
VPS39-205ENST00000562258 SETBP1Q9Y6X0 1596 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 685.9 ms