RNA–Protein interactions for RNA: ENST00000561976.5

VPS9D1-202, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,791 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-202ENST00000561976 EPHA10Q5JZY3 1008 aa16.4■□□□□ 0.22
VPS9D1-202ENST00000561976 THEMISQ8N1K5 641 aaPredicted RBP16.4■□□□□ 0.22
VPS9D1-202ENST00000561976 MYD88Q99836 296 aa16.4■□□□□ 0.22
VPS9D1-202ENST00000561976 DBNLQ9UJU6 430 aaKnown RBP16.4■□□□□ 0.22
VPS9D1-202ENST00000561976 COL15A1P39059 1388 aa16.39■□□□□ 0.21
VPS9D1-202ENST00000561976 KINO60870 393 aaKnown RBP16.39■□□□□ 0.21
VPS9D1-202ENST00000561976 SKILP12757 684 aa16.39■□□□□ 0.21
VPS9D1-202ENST00000561976 ATP5JP18859 108 aa16.39■□□□□ 0.21
VPS9D1-202ENST00000561976 PTPN14Q15678 1187 aa16.39■□□□□ 0.21
VPS9D1-202ENST00000561976 SARM1Q6SZW1 724 aa16.39■□□□□ 0.21
VPS9D1-202ENST00000561976 MRFAP1L1Q96HT8 127 aa16.39■□□□□ 0.21
VPS9D1-202ENST00000561976 CCDC9Q9Y3X0 531 aaKnown RBP16.39■□□□□ 0.21
VPS9D1-202ENST00000561976 NEURL1BA8MQ27 555 aa16.39■□□□□ 0.21
VPS9D1-202ENST00000561976 NEMFO60524 1076 aa16.39■□□□□ 0.21
VPS9D1-202ENST00000561976 TFCP2Q12800 502 aa16.39■□□□□ 0.21
VPS9D1-202ENST00000561976 FBXW7Q969H0 707 aa16.39■□□□□ 0.21
VPS9D1-202ENST00000561976 CTNNA3Q9UI47 895 aa16.39■□□□□ 0.21
VPS9D1-202ENST00000561976 USP16Q9Y5T5 823 aa16.39■□□□□ 0.21
VPS9D1-202ENST00000561976 PXDNQ92626 1479 aa16.39■□□□□ 0.21
VPS9D1-202ENST00000561976 A0A087WWV3 80 aa16.38■□□□□ 0.21
VPS9D1-202ENST00000561976 USP27XA6NNY8 438 aa16.38■□□□□ 0.21
VPS9D1-202ENST00000561976 KIF20AO95235 890 aa16.38■□□□□ 0.21
VPS9D1-202ENST00000561976 GCKRQ14397 625 aa16.38■□□□□ 0.21
VPS9D1-202ENST00000561976 TNNI3KQ59H18 835 aa16.38■□□□□ 0.21
VPS9D1-202ENST00000561976 FPGT-TNNI3KV9GXZ4 949 aa16.38■□□□□ 0.21
VPS9D1-202ENST00000561976 MCMDC2Q4G0Z9 681 aa16.38■□□□□ 0.21
VPS9D1-202ENST00000561976 RBM33Q96EV2 1170 aaKnown RBP16.38■□□□□ 0.21
VPS9D1-202ENST00000561976 GOLPH3LQ9H4A5 285 aa16.38■□□□□ 0.21
VPS9D1-202ENST00000561976 TRMT1Q9NXH9 659 aaKnown RBP16.38■□□□□ 0.21
VPS9D1-202ENST00000561976 HEG1Q9ULI3 1381 aa16.38■□□□□ 0.21
VPS9D1-202ENST00000561976 PPFIA3O75145 1194 aa16.38■□□□□ 0.21
VPS9D1-202ENST00000561976 PDIA6Q15084 440 aa16.38■□□□□ 0.21
VPS9D1-202ENST00000561976 DDX46Q7L014 1031 aaKnown RBP16.38■□□□□ 0.21
VPS9D1-202ENST00000561976 RCOR1Q9UKL0 485 aa16.38■□□□□ 0.21
VPS9D1-202ENST00000561976 LMO7Q8WWI1 1683 aa16.37■□□□□ 0.21
VPS9D1-202ENST00000561976 CCDC69A6NI79 296 aa16.37■□□□□ 0.21
VPS9D1-202ENST00000561976 ME1P48163 572 aa16.37■□□□□ 0.21
VPS9D1-202ENST00000561976 CCT2P78371 535 aaKnown RBP16.37■□□□□ 0.21
VPS9D1-202ENST00000561976 XAGE3Q8WTP9 111 aa16.37■□□□□ 0.21
VPS9D1-202ENST00000561976 ZNF396Q96N95 335 aaPredicted RBP16.37■□□□□ 0.21
VPS9D1-202ENST00000561976 LLPHQ9BRT6 129 aaKnown RBP16.37■□□□□ 0.21
VPS9D1-202ENST00000561976 ANO10Q9NW15 660 aa16.37■□□□□ 0.21
VPS9D1-202ENST00000561976 PTPDC1A2A3K4 754 aa16.37■□□□□ 0.21
VPS9D1-202ENST00000561976 ADD1P35611 737 aaKnown RBP16.37■□□□□ 0.21
VPS9D1-202ENST00000561976 APOBRQ0VD83 1088 aa16.37■□□□□ 0.21
VPS9D1-202ENST00000561976 SLC39A6Q13433 755 aa16.37■□□□□ 0.21
VPS9D1-202ENST00000561976 ESCO1Q5FWF5 840 aa16.37■□□□□ 0.21
VPS9D1-202ENST00000561976 NAA16Q6N069 864 aaPredicted RBP16.37■□□□□ 0.21
VPS9D1-202ENST00000561976 NSUN7Q8NE18 718 aaKnown RBP16.37■□□□□ 0.21
VPS9D1-202ENST00000561976 SMARCC2Q8TAQ2 1214 aa16.37■□□□□ 0.21
VPS9D1-202ENST00000561976 USP28Q96RU2 1077 aa16.37■□□□□ 0.21
VPS9D1-202ENST00000561976 ZNF609O15014 1411 aa16.37■□□□□ 0.21
VPS9D1-202ENST00000561976 NCAPD2Q15021 1401 aa16.37■□□□□ 0.21
VPS9D1-202ENST00000561976 ARHGAP23Q9P227 1491 aa16.36■□□□□ 0.21
VPS9D1-202ENST00000561976 PFKFB2O60825 505 aa16.36■□□□□ 0.21
VPS9D1-202ENST00000561976 GUCY1B3Q02153 619 aa16.36■□□□□ 0.21
VPS9D1-202ENST00000561976 LMOD2Q6P5Q4 547 aa16.36■□□□□ 0.21
VPS9D1-202ENST00000561976 COPS6Q7L5N1 327 aa16.36■□□□□ 0.21
VPS9D1-202ENST00000561976 FSIP1Q8NA03 581 aa16.36■□□□□ 0.21
VPS9D1-202ENST00000561976 DBNDD2Q9BQY9 259 aa16.36■□□□□ 0.21
VPS9D1-202ENST00000561976 USP54Q70EL1 1684 aa16.36■□□□□ 0.21
VPS9D1-202ENST00000561976 RGPD2P0DJD1 1756 aa16.36■□□□□ 0.21
VPS9D1-202ENST00000561976 RBM6P78332 1123 aaKnown RBP16.36■□□□□ 0.21
VPS9D1-202ENST00000561976 ZNF771Q7L3S4 317 aaPredicted RBP16.36■□□□□ 0.21
VPS9D1-202ENST00000561976 CEP57L1Q8IYX8 460 aa16.36■□□□□ 0.21
VPS9D1-202ENST00000561976 ANKRD24Q8TF21 1146 aa16.36■□□□□ 0.21
VPS9D1-202ENST00000561976 ERCC4Q92889 916 aaPredicted RBP16.36■□□□□ 0.21
VPS9D1-202ENST00000561976 COPRSQ9NQ92 184 aa16.36■□□□□ 0.21
VPS9D1-202ENST00000561976 NOL12Q9UGY1 213 aaKnown RBP eCLIP16.36■□□□□ 0.21
VPS9D1-202ENST00000561976 V9GYY5 206 aaPredicted RBP16.36■□□□□ 0.21
VPS9D1-202ENST00000561976 HMGB1P09429 215 aaKnown RBP16.35■□□□□ 0.21
VPS9D1-202ENST00000561976 STOX1Q6ZVD7 989 aa16.35■□□□□ 0.21
VPS9D1-202ENST00000561976 DHX32Q7L7V1 743 aaKnown RBP16.35■□□□□ 0.21
VPS9D1-202ENST00000561976 AOPEPQ8N6M6 819 aa16.35■□□□□ 0.21
VPS9D1-202ENST00000561976 NFAT5O94916 1531 aa16.35■□□□□ 0.21
VPS9D1-202ENST00000561976 FAM160A1Q05DH4 1040 aa16.35■□□□□ 0.21
VPS9D1-202ENST00000561976 SNW1Q13573 536 aaKnown RBP16.35■□□□□ 0.21
VPS9D1-202ENST00000561976 DHX40Q8IX18 779 aaKnown RBP16.35■□□□□ 0.21
VPS9D1-202ENST00000561976 METTL22Q9BUU2 404 aaPredicted RBP16.35■□□□□ 0.21
VPS9D1-202ENST00000561976 PTPN12Q05209 780 aaKnown RBP16.34■□□□□ 0.21
VPS9D1-202ENST00000561976 NCOA5Q9HCD5 579 aaKnown RBP16.34■□□□□ 0.21
VPS9D1-202ENST00000561976 DDX41Q9UJV9 622 aaKnown RBP16.34■□□□□ 0.21
VPS9D1-202ENST00000561976 ZNF215Q9UL58 517 aaPredicted RBP16.34■□□□□ 0.21
VPS9D1-202ENST00000561976 ZRSR1Q15695 479 aaKnown RBP16.34■□□□□ 0.21
VPS9D1-202ENST00000561976 SDF4Q9BRK5 362 aa16.34■□□□□ 0.21
VPS9D1-202ENST00000561976 NAT10Q9H0A0 1025 aaKnown RBP16.34■□□□□ 0.21
VPS9D1-202ENST00000561976 CTDNEP1O95476 244 aa16.33■□□□□ 0.21
VPS9D1-202ENST00000561976 UBE3BQ7Z3V4 1068 aa16.33■□□□□ 0.21
VPS9D1-202ENST00000561976 HAUS7Q99871 368 aa16.33■□□□□ 0.21
VPS9D1-202ENST00000561976 GCP02774 474 aa16.33■□□□□ 0.2
VPS9D1-202ENST00000561976 CCZ1BP86790 482 aa16.33■□□□□ 0.2
VPS9D1-202ENST00000561976 CCZ1P86791 482 aaPredicted RBP16.33■□□□□ 0.2
VPS9D1-202ENST00000561976 ZNF790Q6PG37 636 aa16.33■□□□□ 0.2
VPS9D1-202ENST00000561976 NYAP1Q6ZVC0 841 aa16.33■□□□□ 0.2
VPS9D1-202ENST00000561976 PIP4K2AP48426 406 aaPredicted RBP16.32■□□□□ 0.2
VPS9D1-202ENST00000561976 ANKRD13DQ6ZTN6 518 aa16.32■□□□□ 0.2
VPS9D1-202ENST00000561976 KIF18AQ8NI77 898 aa16.32■□□□□ 0.2
VPS9D1-202ENST00000561976 RFX5P48382 616 aaPredicted RBP16.32■□□□□ 0.2
VPS9D1-202ENST00000561976 CCAR2Q8N163 923 aaKnown RBP16.32■□□□□ 0.2
VPS9D1-202ENST00000561976 KBTBD3Q8NAB2 608 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms