RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 EDC4Q6P2E9 1401 aaKnown RBP8.2□□□□□ -1.1
USP3-210ENST00000559192 GABPB1Q06547 395 aaPredicted RBP8.2□□□□□ -1.1
USP3-210ENST00000559192 MCMDC2Q4G0Z9 681 aa8.2□□□□□ -1.1
USP3-210ENST00000559192 CCDC148Q8NFR7 591 aa8.2□□□□□ -1.1
USP3-210ENST00000559192 NUP88Q99567 741 aaPredicted RBP8.2□□□□□ -1.1
USP3-210ENST00000559192 NCOA5Q9HCD5 579 aaKnown RBP8.2□□□□□ -1.1
USP3-210ENST00000559192 PUF60Q9UHX1 559 aaKnown RBP8.2□□□□□ -1.1
USP3-210ENST00000559192 MAP3K5Q99683 1374 aa8.2□□□□□ -1.1
USP3-210ENST00000559192 ZNF213O14771 459 aa8.19□□□□□ -1.1
USP3-210ENST00000559192 DDIT3P35638 169 aa8.19□□□□□ -1.1
USP3-210ENST00000559192 SSH2Q76I76 1423 aa8.19□□□□□ -1.1
USP3-210ENST00000559192 A0A087WWV3 80 aa8.19□□□□□ -1.1
USP3-210ENST00000559192 GRM8O00222 908 aa8.19□□□□□ -1.1
USP3-210ENST00000559192 EVA1CP58658 441 aa8.19□□□□□ -1.1
USP3-210ENST00000559192 CUL4AQ13619 759 aa8.19□□□□□ -1.1
USP3-210ENST00000559192 CCDC181Q5TID7 509 aa8.19□□□□□ -1.1
USP3-210ENST00000559192 MICU3Q86XE3 530 aa8.19□□□□□ -1.1
USP3-210ENST00000559192 AMOTL2Q9Y2J4 779 aa8.19□□□□□ -1.1
USP3-210ENST00000559192 SPHKAPQ2M3C7 1700 aa8.19□□□□□ -1.1
USP3-210ENST00000559192 CDC42BPBQ9Y5S2 1711 aa8.19□□□□□ -1.1
USP3-210ENST00000559192 ABCA6Q8N139 1617 aa8.19□□□□□ -1.1
USP3-210ENST00000559192 IQSEC2Q5JU85 1478 aa8.19□□□□□ -1.1
USP3-210ENST00000559192 TFCP2Q12800 502 aa8.19□□□□□ -1.1
USP3-210ENST00000559192 UTP14CQ5TAP6 766 aaKnown RBP8.19□□□□□ -1.1
USP3-210ENST00000559192 TTC6Q86TZ1 520 aa8.19□□□□□ -1.1
USP3-210ENST00000559192 LSG1Q9H089 658 aaKnown RBP8.19□□□□□ -1.1
USP3-210ENST00000559192 ARFGAP3Q9NP61 516 aa8.19□□□□□ -1.1
USP3-210ENST00000559192 ZNHIT6Q9NWK9 470 aaKnown RBP8.19□□□□□ -1.1
USP3-210ENST00000559192 VPS18Q9P253 973 aa8.19□□□□□ -1.1
USP3-210ENST00000559192 ZNF215Q9UL58 517 aaPredicted RBP8.19□□□□□ -1.1
USP3-210ENST00000559192 MAP3K19Q56UN5 1328 aa8.19□□□□□ -1.1
USP3-210ENST00000559192 GOLGA8AA7E2F4 631 aa8.19□□□□□ -1.1
USP3-210ENST00000559192 GTF2E1P29083 439 aaPredicted RBP8.19□□□□□ -1.1
USP3-210ENST00000559192 SSR1P43307 286 aaKnown RBP8.19□□□□□ -1.1
USP3-210ENST00000559192 ZC3H6P61129 1189 aaKnown RBP8.19□□□□□ -1.1
USP3-210ENST00000559192 KIF6Q6ZMV9 814 aa8.19□□□□□ -1.1
USP3-210ENST00000559192 SPTLC2O15270 562 aa8.19□□□□□ -1.1
USP3-210ENST00000559192 TDO2P48775 406 aa8.19□□□□□ -1.1
USP3-210ENST00000559192 FAM160A1Q05DH4 1040 aa8.19□□□□□ -1.1
USP3-210ENST00000559192 OTUD7BQ6GQQ9 843 aa8.19□□□□□ -1.1
USP3-210ENST00000559192 C10orf67Q8IYJ2 551 aa8.19□□□□□ -1.1
USP3-210ENST00000559192 KCNG4Q8TDN1 519 aa8.19□□□□□ -1.1
USP3-210ENST00000559192 LZTFL1Q9NQ48 299 aa8.19□□□□□ -1.1
USP3-210ENST00000559192 QRICH2Q9H0J4 1663 aa8.18□□□□□ -1.1
USP3-210ENST00000559192 RAD21O60216 631 aa8.18□□□□□ -1.1
USP3-210ENST00000559192 KIAA1524Q8TCG1 905 aa8.18□□□□□ -1.1
USP3-210ENST00000559192 MYO6Q9UM54 1294 aa8.18□□□□□ -1.1
USP3-210ENST00000559192 MNAT1P51948 309 aa8.18□□□□□ -1.1
USP3-210ENST00000559192 EVCP57679 992 aa8.18□□□□□ -1.1
USP3-210ENST00000559192 SSRP1Q08945 709 aaKnown RBP8.18□□□□□ -1.1
USP3-210ENST00000559192 CLEC17AQ6ZS10 378 aa8.18□□□□□ -1.1
USP3-210ENST00000559192 AIDAQ96BJ3 306 aa8.18□□□□□ -1.1
USP3-210ENST00000559192 CRACR2AQ9BSW2 395 aa8.18□□□□□ -1.1
USP3-210ENST00000559192 RSPH14Q9UHP6 348 aa8.18□□□□□ -1.1
USP3-210ENST00000559192 SHTN1A0MZ66 631 aa8.18□□□□□ -1.1
USP3-210ENST00000559192 TXLNAP40222 546 aa8.18□□□□□ -1.1
USP3-210ENST00000559192 METAP2P50579 478 aaKnown RBP eCLIP8.18□□□□□ -1.1
USP3-210ENST00000559192 SLC39A6Q13433 755 aa8.18□□□□□ -1.1
USP3-210ENST00000559192 KSR2Q6VAB6 950 aa8.18□□□□□ -1.1
USP3-210ENST00000559192 LRRC8AQ8IWT6 810 aa8.18□□□□□ -1.1
USP3-210ENST00000559192 POGZQ7Z3K3 1410 aa8.18□□□□□ -1.1
USP3-210ENST00000559192 NCOA3Q9Y6Q9 1424 aa8.18□□□□□ -1.1
USP3-210ENST00000559192 KIAA0232Q92628 1395 aa8.18□□□□□ -1.1
USP3-210ENST00000559192 ZNF853P0CG23 659 aa8.18□□□□□ -1.1
USP3-210ENST00000559192 RXRAP19793 462 aa8.18□□□□□ -1.1
USP3-210ENST00000559192 CARD6Q9BX69 1037 aa8.18□□□□□ -1.1
USP3-210ENST00000559192 GBP3Q9H0R5 595 aa8.18□□□□□ -1.1
USP3-210ENST00000559192 FLT4P35916 1363 aa8.18□□□□□ -1.1
USP3-210ENST00000559192 PHACTR2O75167 634 aa8.17□□□□□ -1.1
USP3-210ENST00000559192 ERCC6LQ2NKX8 1250 aa8.17□□□□□ -1.1
USP3-210ENST00000559192 CCDC102BQ68D86 513 aa8.17□□□□□ -1.1
USP3-210ENST00000559192 LRRC59Q96AG4 307 aaKnown RBP8.17□□□□□ -1.1
USP3-210ENST00000559192 EDC3Q96F86 508 aaKnown RBP8.17□□□□□ -1.1
USP3-210ENST00000559192 SLC26A6Q9BXS9 759 aa8.17□□□□□ -1.1
USP3-210ENST00000559192 RHOXF2BP0C7M4 288 aa8.17□□□□□ -1.1
USP3-210ENST00000559192 GOLGA1Q92805 767 aa8.17□□□□□ -1.1
USP3-210ENST00000559192 RHOXF2Q9BQY4 288 aa8.17□□□□□ -1.1
USP3-210ENST00000559192 ALG1Q9BT22 464 aa8.17□□□□□ -1.1
USP3-210ENST00000559192 USP44Q9H0E7 712 aa8.17□□□□□ -1.1
USP3-210ENST00000559192 SLC12A7Q9Y666 1083 aa8.17□□□□□ -1.1
USP3-210ENST00000559192 EIF5P55010 431 aaKnown RBP8.17□□□□□ -1.1
USP3-210ENST00000559192 XAGE3Q8WTP9 111 aa8.17□□□□□ -1.1
USP3-210ENST00000559192 WASF1Q92558 559 aa8.17□□□□□ -1.1
USP3-210ENST00000559192 GOLGA6L9A6NEM1 432 aa8.17□□□□□ -1.1
USP3-210ENST00000559192 AFMP43652 599 aa8.17□□□□□ -1.1
USP3-210ENST00000559192 PPP2R3AQ06190 1150 aa8.17□□□□□ -1.1
USP3-210ENST00000559192 METTL24Q5JXM2 366 aa8.17□□□□□ -1.1
USP3-210ENST00000559192 UBAC1Q9BSL1 405 aa8.17□□□□□ -1.1
USP3-210ENST00000559192 OSBPL3Q9H4L5 887 aa8.17□□□□□ -1.1
USP3-210ENST00000559192 CEP131Q9UPN4 1083 aa8.17□□□□□ -1.1
USP3-210ENST00000559192 TET3O43151 1660 aa8.16□□□□□ -1.1
USP3-210ENST00000559192 A0A0D9SFI3 127 aa8.16□□□□□ -1.1
USP3-210ENST00000559192 CYP2E1P05181 493 aaPredicted RBP8.16□□□□□ -1.1
USP3-210ENST00000559192 CAPN2P17655 700 aa8.16□□□□□ -1.1
USP3-210ENST00000559192 NCOA7Q8NI08 942 aa8.16□□□□□ -1.1
USP3-210ENST00000559192 ALDH1L1O75891 902 aa8.16□□□□□ -1.1
USP3-210ENST00000559192 DNA2P51530 1060 aa8.16□□□□□ -1.1
USP3-210ENST00000559192 AMOTQ4VCS5 1084 aa8.16□□□□□ -1.1
USP3-210ENST00000559192 CTR9Q6PD62 1173 aa8.16□□□□□ -1.1
USP3-210ENST00000559192 C11orf57Q6ZUT1 292 aaPredicted RBP8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms