RNA–Protein interactions for RNA: ENST00000558868.5

TPM1-215, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 653 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-215ENST00000558868 ATP2B3Q16720 1220 aa16.7■□□□□ 0.26
TPM1-215ENST00000558868 TXNRD1Q16881 649 aa16.7■□□□□ 0.26
TPM1-215ENST00000558868 ERFEQ4G0M1 354 aa16.7■□□□□ 0.26
TPM1-215ENST00000558868 KIAA1211Q6ZU35 1233 aa16.7■□□□□ 0.26
TPM1-215ENST00000558868 IL27Q8NEV9 243 aa16.7■□□□□ 0.26
TPM1-215ENST00000558868 COL24A1Q17RW2 1714 aa16.7■□□□□ 0.26
TPM1-215ENST00000558868 SGSM2O43147 1006 aa16.69■□□□□ 0.26
TPM1-215ENST00000558868 PHF14O94880 888 aa16.69■□□□□ 0.26
TPM1-215ENST00000558868 TIMM10P62072 90 aa16.69■□□□□ 0.26
TPM1-215ENST00000558868 RABEP1Q15276 862 aa16.69■□□□□ 0.26
TPM1-215ENST00000558868 FSD1Q9BTV5 496 aa16.69■□□□□ 0.26
TPM1-215ENST00000558868 RIC1Q4ADV7 1423 aa16.69■□□□□ 0.26
TPM1-215ENST00000558868 RAD50Q92878 1312 aa16.69■□□□□ 0.26
TPM1-215ENST00000558868 C4AP0C0L4 1744 aa16.68■□□□□ 0.26
TPM1-215ENST00000558868 CARMIL3Q8ND23 1372 aa16.68■□□□□ 0.26
TPM1-215ENST00000558868 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.68■□□□□ 0.26
TPM1-215ENST00000558868 PDE8BO95263 885 aa16.68■□□□□ 0.26
TPM1-215ENST00000558868 APBA3O96018 575 aa16.68■□□□□ 0.26
TPM1-215ENST00000558868 LRRFIP1Q32MZ4 808 aaKnown RBP16.68■□□□□ 0.26
TPM1-215ENST00000558868 TTC39AQ5SRH9 613 aa16.68■□□□□ 0.26
TPM1-215ENST00000558868 SNX21Q969T3 373 aa16.68■□□□□ 0.26
TPM1-215ENST00000558868 NLRP3Q96P20 1036 aa16.68■□□□□ 0.26
TPM1-215ENST00000558868 ANO2Q9NQ90 1003 aa16.68■□□□□ 0.26
TPM1-215ENST00000558868 UBR3Q6ZT12 1888 aa16.67■□□□□ 0.26
TPM1-215ENST00000558868 IFIT1P09914 478 aaKnown RBP16.67■□□□□ 0.26
TPM1-215ENST00000558868 ANAPC15P60006 121 aa16.67■□□□□ 0.26
TPM1-215ENST00000558868 C1QTNF8P60827 252 aa16.67■□□□□ 0.26
TPM1-215ENST00000558868 PUM3Q15397 648 aaKnown RBP16.67■□□□□ 0.26
TPM1-215ENST00000558868 HSCBQ8IWL3 235 aa16.67■□□□□ 0.26
TPM1-215ENST00000558868 XAGE2Q96GT9 111 aa16.67■□□□□ 0.26
TPM1-215ENST00000558868 SPEF2Q9C093 1822 aa16.66■□□□□ 0.26
TPM1-215ENST00000558868 NPHP1O15259 732 aa16.66■□□□□ 0.26
TPM1-215ENST00000558868 CWC27Q6UX04 472 aaKnown RBP16.66■□□□□ 0.26
TPM1-215ENST00000558868 SMIM5Q71RC9 77 aa16.66■□□□□ 0.26
TPM1-215ENST00000558868 ANKRD18AQ8IVF6 992 aa16.66■□□□□ 0.26
TPM1-215ENST00000558868 VGLL2Q8N8G2 317 aa16.66■□□□□ 0.26
TPM1-215ENST00000558868 FLAD1Q8NFF5 587 aa16.66■□□□□ 0.26
TPM1-215ENST00000558868 LPIN2Q92539 896 aa16.66■□□□□ 0.26
TPM1-215ENST00000558868 ZNF512BQ96KM6 892 aaPredicted RBP16.66■□□□□ 0.26
TPM1-215ENST00000558868 DNAJC2Q99543 621 aaKnown RBP16.66■□□□□ 0.26
TPM1-215ENST00000558868 SLC5A1P13866 664 aa16.65■□□□□ 0.26
TPM1-215ENST00000558868 AMIGO3Q86WK7 504 aa16.65■□□□□ 0.26
TPM1-215ENST00000558868 KBTBD3Q8NAB2 608 aa16.65■□□□□ 0.26
TPM1-215ENST00000558868 ZNF784Q8NCA9 323 aaPredicted RBP16.65■□□□□ 0.26
TPM1-215ENST00000558868 KIF2CQ99661 725 aa16.65■□□□□ 0.26
TPM1-215ENST00000558868 SEC31BQ9NQW1 1179 aa16.65■□□□□ 0.26
TPM1-215ENST00000558868 PAG1Q9NWQ8 432 aa16.65■□□□□ 0.26
TPM1-215ENST00000558868 UQCRFS1P1P0C7P4 283 aa16.64■□□□□ 0.25
TPM1-215ENST00000558868 NFIXQ14938 502 aa16.64■□□□□ 0.25
TPM1-215ENST00000558868 PROM2Q8N271 834 aa16.64■□□□□ 0.25
TPM1-215ENST00000558868 TBC1D2Q9BYX2 928 aa16.64■□□□□ 0.25
TPM1-215ENST00000558868 SNRKQ9NRH2 765 aa16.64■□□□□ 0.25
TPM1-215ENST00000558868 GYS1P13807 737 aa16.63■□□□□ 0.25
TPM1-215ENST00000558868 CNBD1Q8NA66 436 aa16.63■□□□□ 0.25
TPM1-215ENST00000558868 BSDC1Q9NW68 430 aaPredicted RBP16.63■□□□□ 0.25
TPM1-215ENST00000558868 RGPD3A6NKT7 1758 aaPredicted RBP16.63■□□□□ 0.25
TPM1-215ENST00000558868 RGPD4Q7Z3J3 1758 aa16.63■□□□□ 0.25
TPM1-215ENST00000558868 ST18O60284 1047 aa16.62■□□□□ 0.25
TPM1-215ENST00000558868 FGFR2P21802 821 aa16.62■□□□□ 0.25
TPM1-215ENST00000558868 ADORA1P30542 326 aa16.62■□□□□ 0.25
TPM1-215ENST00000558868 NMIQ13287 307 aaPredicted RBP16.62■□□□□ 0.25
TPM1-215ENST00000558868 IL17RAQ96F46 866 aa16.62■□□□□ 0.25
TPM1-215ENST00000558868 LSG1Q9H089 658 aaKnown RBP16.62■□□□□ 0.25
TPM1-215ENST00000558868 TFCP2L1Q9NZI6 479 aa16.62■□□□□ 0.25
TPM1-215ENST00000558868 GOLIM4O00461 696 aa16.61■□□□□ 0.25
TPM1-215ENST00000558868 ZFYP08048 801 aaPredicted RBP16.61■□□□□ 0.25
TPM1-215ENST00000558868 HSPA4P34932 840 aa16.61■□□□□ 0.25
TPM1-215ENST00000558868 SLC4A3P48751 1232 aa16.61■□□□□ 0.25
TPM1-215ENST00000558868 ST5P78524 1137 aa16.61■□□□□ 0.25
TPM1-215ENST00000558868 TTF1Q15361 905 aaPredicted RBP16.61■□□□□ 0.25
TPM1-215ENST00000558868 DDX46Q7L014 1031 aaKnown RBP16.61■□□□□ 0.25
TPM1-215ENST00000558868 AKT1S1Q96B36 256 aa16.61■□□□□ 0.25
TPM1-215ENST00000558868 ARAP2Q8WZ64 1704 aa16.6■□□□□ 0.25
TPM1-215ENST00000558868 TM4SF1P30408 202 aa16.6■□□□□ 0.25
TPM1-215ENST00000558868 RPS8P62241 208 aaKnown RBP16.6■□□□□ 0.25
TPM1-215ENST00000558868 CHRNDQ07001 517 aa16.6■□□□□ 0.25
TPM1-215ENST00000558868 HELLSQ9NRZ9 838 aa16.6■□□□□ 0.25
TPM1-215ENST00000558868 ARID4AP29374 1257 aaPredicted RBP16.59■□□□□ 0.25
TPM1-215ENST00000558868 ZSCAN25Q6NSZ9 544 aa16.59■□□□□ 0.25
TPM1-215ENST00000558868 C3orf67Q6ZVT6 689 aa16.59■□□□□ 0.25
TPM1-215ENST00000558868 NLGN1Q8N2Q7 840 aa16.59■□□□□ 0.25
TPM1-215ENST00000558868 EDC3Q96F86 508 aaKnown RBP16.59■□□□□ 0.25
TPM1-215ENST00000558868 FAM227BQ96M60 508 aa16.59■□□□□ 0.25
TPM1-215ENST00000558868 ANKRD2Q9GZV1 360 aa16.59■□□□□ 0.25
TPM1-215ENST00000558868 CCDC171Q6TFL3 1326 aa16.59■□□□□ 0.25
TPM1-215ENST00000558868 TNS1Q9HBL0 1735 aaKnown RBP16.59■□□□□ 0.25
TPM1-215ENST00000558868 RNF113AO15541 343 aaKnown RBP16.58■□□□□ 0.24
TPM1-215ENST00000558868 SERPINB2P05120 415 aa16.58■□□□□ 0.24
TPM1-215ENST00000558868 MCM2P49736 904 aa16.58■□□□□ 0.24
TPM1-215ENST00000558868 FKBP4Q02790 459 aaKnown RBP eCLIP16.58■□□□□ 0.24
TPM1-215ENST00000558868 UBE4AQ14139 1066 aa16.58■□□□□ 0.24
TPM1-215ENST00000558868 MCMDC2Q4G0Z9 681 aa16.58■□□□□ 0.24
TPM1-215ENST00000558868 CCDC102BQ68D86 513 aa16.58■□□□□ 0.24
TPM1-215ENST00000558868 HELBQ8NG08 1087 aaPredicted RBP16.58■□□□□ 0.24
TPM1-215ENST00000558868 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.58■□□□□ 0.24
TPM1-215ENST00000558868 IL25Q9H293 177 aa16.58■□□□□ 0.24
TPM1-215ENST00000558868 MED23Q9ULK4 1368 aa16.58■□□□□ 0.24
TPM1-215ENST00000558868 CASZ1Q86V15 1759 aa16.57■□□□□ 0.24
TPM1-215ENST00000558868 A0A0D9SFI3 127 aa16.57■□□□□ 0.24
TPM1-215ENST00000558868 K7ELQ4 463 aaPredicted RBP16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms