RNA–Protein interactions for RNA: ENST00000557740.5

SHMT2-235, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-235ENST00000557740 GPR101Q96P66 508 aaPredicted RBP18.76■□□□□ 0.59
SHMT2-235ENST00000557740 ZC3H12CQ9C0D7 883 aaKnown RBP18.76■□□□□ 0.59
SHMT2-235ENST00000557740 PODXL2Q9NZ53 605 aa18.76■□□□□ 0.59
SHMT2-235ENST00000557740 CNOT7Q9UIV1 285 aaKnown RBP18.76■□□□□ 0.59
SHMT2-235ENST00000557740 GGA1Q9UJY5 639 aa18.76■□□□□ 0.59
SHMT2-235ENST00000557740 FANCIQ9NVI1 1328 aa18.75■□□□□ 0.59
SHMT2-235ENST00000557740 IGKV5-2P06315 115 aa18.75■□□□□ 0.59
SHMT2-235ENST00000557740 ZC3H15Q8WU90 426 aaKnown RBP18.75■□□□□ 0.59
SHMT2-235ENST00000557740 CDC5LQ99459 802 aaKnown RBP18.75■□□□□ 0.59
SHMT2-235ENST00000557740 ZBTB12Q9Y330 459 aaPredicted RBP18.75■□□□□ 0.59
SHMT2-235ENST00000557740 SALL2Q9Y467 1007 aaPredicted RBP18.75■□□□□ 0.59
SHMT2-235ENST00000557740 FOXN1O15353 648 aa18.74■□□□□ 0.59
SHMT2-235ENST00000557740 RPS12P25398 132 aaKnown RBP18.74■□□□□ 0.59
SHMT2-235ENST00000557740 CWF19L2Q2TBE0 894 aaKnown RBP18.74■□□□□ 0.59
SHMT2-235ENST00000557740 DPF2Q92785 391 aa18.74■□□□□ 0.59
SHMT2-235ENST00000557740 GLIS2Q9BZE0 524 aaPredicted RBP18.74■□□□□ 0.59
SHMT2-235ENST00000557740 WDR33Q9C0J8 1336 aaKnown RBP18.74■□□□□ 0.59
SHMT2-235ENST00000557740 SHTN1A0MZ66 631 aa18.73■□□□□ 0.59
SHMT2-235ENST00000557740 NEURL1BA8MQ27 555 aa18.73■□□□□ 0.59
SHMT2-235ENST00000557740 FLIIQ13045 1269 aa18.73■□□□□ 0.59
SHMT2-235ENST00000557740 G2E3Q7L622 706 aa18.73■□□□□ 0.59
SHMT2-235ENST00000557740 XDHP47989 1333 aa18.73■□□□□ 0.59
SHMT2-235ENST00000557740 RTL9Q8NET4 1388 aa18.72■□□□□ 0.59
SHMT2-235ENST00000557740 CELF2O95319 508 aaKnown RBP18.72■□□□□ 0.59
SHMT2-235ENST00000557740 ECE1P42892 770 aa18.72■□□□□ 0.59
SHMT2-235ENST00000557740 HIRAP54198 1017 aaPredicted RBP18.72■□□□□ 0.59
SHMT2-235ENST00000557740 GRM1Q13255 1194 aa18.72■□□□□ 0.59
SHMT2-235ENST00000557740 FKBP5Q13451 457 aaPredicted RBP18.72■□□□□ 0.59
SHMT2-235ENST00000557740 CST9Q5W186 159 aa18.72■□□□□ 0.59
SHMT2-235ENST00000557740 UBE3BQ7Z3V4 1068 aa18.72■□□□□ 0.59
SHMT2-235ENST00000557740 WDR63Q8IWG1 891 aa18.72■□□□□ 0.59
SHMT2-235ENST00000557740 PGAP2Q9UHJ9 254 aa18.72■□□□□ 0.59
SHMT2-235ENST00000557740 TLL2Q9Y6L7 1015 aa18.72■□□□□ 0.59
SHMT2-235ENST00000557740 CTCFP49711 727 aaPredicted RBP18.71■□□□□ 0.59
SHMT2-235ENST00000557740 CDC37L1Q7L3B6 337 aa18.71■□□□□ 0.59
SHMT2-235ENST00000557740 CAPNS2Q96L46 248 aa18.71■□□□□ 0.59
SHMT2-235ENST00000557740 ZNF408Q9H9D4 720 aa18.71■□□□□ 0.59
SHMT2-235ENST00000557740 KCNQ5Q9NR82 932 aa18.71■□□□□ 0.59
SHMT2-235ENST00000557740 WBP1LQ9NX94 342 aa18.71■□□□□ 0.59
SHMT2-235ENST00000557740 MAP2K1Q02750 393 aaPredicted RBP18.7■□□□□ 0.58
SHMT2-235ENST00000557740 TBC1D10BQ4KMP7 808 aaPredicted RBP18.7■□□□□ 0.58
SHMT2-235ENST00000557740 SAMD7Q7Z3H4 446 aa18.7■□□□□ 0.58
SHMT2-235ENST00000557740 TTLL11Q8NHH1 800 aa18.7■□□□□ 0.58
SHMT2-235ENST00000557740 MYH16Q9H6N6 1097 aa18.7■□□□□ 0.58
SHMT2-235ENST00000557740 GREM2Q9H772 168 aa18.7■□□□□ 0.58
SHMT2-235ENST00000557740 CAPN15O75808 1086 aa18.69■□□□□ 0.58
SHMT2-235ENST00000557740 ATP2B4P23634 1241 aa18.69■□□□□ 0.58
SHMT2-235ENST00000557740 CYP4F22Q6NT55 531 aa18.69■□□□□ 0.58
SHMT2-235ENST00000557740 DNAAF4Q8WXU2 420 aa18.69■□□□□ 0.58
SHMT2-235ENST00000557740 H7C1W4 665 aa18.68■□□□□ 0.58
SHMT2-235ENST00000557740 VIL1P09327 827 aaKnown RBP18.68■□□□□ 0.58
SHMT2-235ENST00000557740 EXOSC9Q06265 439 aaKnown RBP18.68■□□□□ 0.58
SHMT2-235ENST00000557740 GCKRQ14397 625 aa18.68■□□□□ 0.58
SHMT2-235ENST00000557740 RBM26Q5T8P6 1007 aaKnown RBP18.68■□□□□ 0.58
SHMT2-235ENST00000557740 FAM9BQ8IZU0 186 aa18.68■□□□□ 0.58
SHMT2-235ENST00000557740 PRDM10Q9NQV6 1147 aa18.68■□□□□ 0.58
SHMT2-235ENST00000557740 BSDC1Q9NW68 430 aaPredicted RBP18.68■□□□□ 0.58
SHMT2-235ENST00000557740 TRPM7Q96QT4 1865 aa18.68■□□□□ 0.58
SHMT2-235ENST00000557740 IGHMBP2P38935 993 aaKnown RBP18.67■□□□□ 0.58
SHMT2-235ENST00000557740 KIF4BQ2VIQ3 1234 aa18.67■□□□□ 0.58
SHMT2-235ENST00000557740 KRT26Q7Z3Y9 468 aa18.67■□□□□ 0.58
SHMT2-235ENST00000557740 SAPCD2Q86UD0 394 aa18.67■□□□□ 0.58
SHMT2-235ENST00000557740 USP48Q86UV5 1035 aa18.67■□□□□ 0.58
SHMT2-235ENST00000557740 LINS1Q8NG48 757 aa18.67■□□□□ 0.58
SHMT2-235ENST00000557740 VAMP4O75379 141 aa18.66■□□□□ 0.58
SHMT2-235ENST00000557740 DCPSQ96C86 337 aaKnown RBP18.66■□□□□ 0.58
SHMT2-235ENST00000557740 BEGAINQ9BUH8 593 aa18.66■□□□□ 0.58
SHMT2-235ENST00000557740 MINPP1Q9UNW1 487 aa18.66■□□□□ 0.58
SHMT2-235ENST00000557740 THSD7BQ9C0I4 1608 aa18.65■□□□□ 0.58
SHMT2-235ENST00000557740 EGFRP00533 1210 aa18.65■□□□□ 0.58
SHMT2-235ENST00000557740 LBX1P52954 281 aa18.65■□□□□ 0.58
SHMT2-235ENST00000557740 RSBN1LQ6PCB5 846 aaPredicted RBP18.65■□□□□ 0.58
SHMT2-235ENST00000557740 AGBL3Q8NEM8 1001 aa18.65■□□□□ 0.58
SHMT2-235ENST00000557740 PLA2G12BQ9BX93 195 aa18.65■□□□□ 0.58
SHMT2-235ENST00000557740 MED23Q9ULK4 1368 aa18.65■□□□□ 0.58
SHMT2-235ENST00000557740 ZNF609O15014 1411 aa18.65■□□□□ 0.58
SHMT2-235ENST00000557740 ITGA6P23229 1130 aa18.64■□□□□ 0.57
SHMT2-235ENST00000557740 FAM161AQ3B820 660 aa18.64■□□□□ 0.57
SHMT2-235ENST00000557740 PODNQ7Z5L7 613 aa18.64■□□□□ 0.57
SHMT2-235ENST00000557740 HHIPL1Q96JK4 782 aa18.64■□□□□ 0.57
SHMT2-235ENST00000557740 GGA3Q9NZ52 723 aa18.64■□□□□ 0.57
SHMT2-235ENST00000557740 MYH3P11055 1940 aa18.63■□□□□ 0.57
SHMT2-235ENST00000557740 SCN9AQ15858 1988 aa18.63■□□□□ 0.57
SHMT2-235ENST00000557740 USP17L3A6NCW0 530 aa18.63■□□□□ 0.57
SHMT2-235ENST00000557740 USP17L4A6NCW7 530 aa18.63■□□□□ 0.57
SHMT2-235ENST00000557740 HSPA8P11142 646 aaKnown RBP18.63■□□□□ 0.57
SHMT2-235ENST00000557740 CCT4P50991 539 aaKnown RBP18.63■□□□□ 0.57
SHMT2-235ENST00000557740 USP17L1Q7RTZ2 530 aa18.63■□□□□ 0.57
SHMT2-235ENST00000557740 SULF1Q8IWU6 871 aa18.63■□□□□ 0.57
SHMT2-235ENST00000557740 MPHOSPH8Q99549 860 aa18.63■□□□□ 0.57
SHMT2-235ENST00000557740 SPINK5Q9NQ38 1064 aaPredicted RBP18.63■□□□□ 0.57
SHMT2-235ENST00000557740 ADM5C9JUS6 153 aa18.62■□□□□ 0.57
SHMT2-235ENST00000557740 AOC2O75106 756 aa18.62■□□□□ 0.57
SHMT2-235ENST00000557740 MAP2K2P36507 400 aa18.62■□□□□ 0.57
SHMT2-235ENST00000557740 CASP7P55210 303 aa18.62■□□□□ 0.57
SHMT2-235ENST00000557740 F6X3S4 739 aa18.61■□□□□ 0.57
SHMT2-235ENST00000557740 USP17L8P0C7I0 530 aa18.61■□□□□ 0.57
SHMT2-235ENST00000557740 HUNKP57058 714 aa18.61■□□□□ 0.57
SHMT2-235ENST00000557740 ZNF280AP59817 542 aaPredicted RBP18.61■□□□□ 0.57
SHMT2-235ENST00000557740 DLK2Q6UY11 383 aa18.61■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms