RNA–Protein interactions for RNA: ENST00000557275.5

SYNE3-205, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene SYNE3, Length 13,488 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-205ENST00000557275 RPGRIP1Q96KN7 1286 aa9.97□□□□□ -0.81
SYNE3-205ENST00000557275 CNGA4Q8IV77 575 aa9.97□□□□□ -0.81
SYNE3-205ENST00000557275 SUPT6HQ7KZ85 1726 aaKnown RBP9.97□□□□□ -0.81
SYNE3-205ENST00000557275 N4BP3O15049 544 aa9.97□□□□□ -0.81
SYNE3-205ENST00000557275 CLCN1P35523 988 aa9.97□□□□□ -0.81
SYNE3-205ENST00000557275 DEUP1Q05D60 604 aa9.97□□□□□ -0.81
SYNE3-205ENST00000557275 MAK16Q9BXY0 300 aaKnown RBP9.97□□□□□ -0.81
SYNE3-205ENST00000557275 PPP1R12CQ9BZL4 782 aa9.97□□□□□ -0.81
SYNE3-205ENST00000557275 PALM3A6NDB9 673 aaPredicted RBP9.97□□□□□ -0.81
SYNE3-205ENST00000557275 HSPA8P11142 646 aaKnown RBP9.97□□□□□ -0.81
SYNE3-205ENST00000557275 HSPA1LP34931 641 aa9.97□□□□□ -0.81
SYNE3-205ENST00000557275 MTMR3Q13615 1198 aa9.97□□□□□ -0.81
SYNE3-205ENST00000557275 PSMD1Q99460 953 aa9.97□□□□□ -0.81
SYNE3-205ENST00000557275 SPATS2LQ9NUQ6 558 aaKnown RBP9.97□□□□□ -0.81
SYNE3-205ENST00000557275 SATB2Q9UPW6 733 aa9.97□□□□□ -0.81
SYNE3-205ENST00000557275 TRIM14Q14142 442 aa9.96□□□□□ -0.81
SYNE3-205ENST00000557275 AFAP1L1Q8TED9 768 aa9.96□□□□□ -0.81
SYNE3-205ENST00000557275 CAMK4Q16566 473 aa9.96□□□□□ -0.81
SYNE3-205ENST00000557275 LRCH2Q5VUJ6 765 aa9.96□□□□□ -0.81
SYNE3-205ENST00000557275 TRIM47Q96LD4 638 aa9.96□□□□□ -0.81
SYNE3-205ENST00000557275 UTP11Q9Y3A2 253 aaKnown RBP9.96□□□□□ -0.81
SYNE3-205ENST00000557275 IQCDQ96DY2 449 aa9.96□□□□□ -0.81
SYNE3-205ENST00000557275 KIF21BO75037 1637 aa9.96□□□□□ -0.81
SYNE3-205ENST00000557275 MAP3K12Q12852 859 aa9.96□□□□□ -0.81
SYNE3-205ENST00000557275 KLHL40Q2TBA0 621 aa9.96□□□□□ -0.81
SYNE3-205ENST00000557275 SEL1L2Q5TEA6 688 aa9.96□□□□□ -0.81
SYNE3-205ENST00000557275 NECTIN2Q92692 538 aa9.96□□□□□ -0.81
SYNE3-205ENST00000557275 TWISTNBQ3B726 338 aaPredicted RBP9.96□□□□□ -0.81
SYNE3-205ENST00000557275 WDR46O15213 610 aaKnown RBP9.96□□□□□ -0.82
SYNE3-205ENST00000557275 KRT3P12035 628 aa9.96□□□□□ -0.82
SYNE3-205ENST00000557275 TRAF3IP1Q8TDR0 691 aaPredicted RBP9.96□□□□□ -0.82
SYNE3-205ENST00000557275 UBASH3AP57075 661 aa9.96□□□□□ -0.82
SYNE3-205ENST00000557275 SLC8A3P57103 927 aa9.96□□□□□ -0.82
SYNE3-205ENST00000557275 FKBP4Q02790 459 aaKnown RBP eCLIP9.96□□□□□ -0.82
SYNE3-205ENST00000557275 VWA3BQ502W6 1294 aa9.96□□□□□ -0.82
SYNE3-205ENST00000557275 HDGFL1Q5TGJ6 251 aa9.96□□□□□ -0.82
SYNE3-205ENST00000557275 TMTC2Q8N394 836 aa9.96□□□□□ -0.82
SYNE3-205ENST00000557275 PDE4BQ07343 736 aa9.96□□□□□ -0.82
SYNE3-205ENST00000557275 PPP1R7Q15435 360 aa9.96□□□□□ -0.82
SYNE3-205ENST00000557275 PAWRQ96IZ0 340 aaKnown RBP9.96□□□□□ -0.82
SYNE3-205ENST00000557275 SELENOSQ9BQE4 189 aa9.96□□□□□ -0.82
SYNE3-205ENST00000557275 KIFAP3Q92845 792 aa9.95□□□□□ -0.82
SYNE3-205ENST00000557275 PDZRN3Q9UPQ7 1066 aa9.95□□□□□ -0.82
SYNE3-205ENST00000557275 POGZQ7Z3K3 1410 aa9.95□□□□□ -0.82
SYNE3-205ENST00000557275 PDE1CQ14123 709 aaPredicted RBP9.95□□□□□ -0.82
SYNE3-205ENST00000557275 RAPGEF2Q9Y4G8 1499 aa9.95□□□□□ -0.82
SYNE3-205ENST00000557275 COG7P83436 770 aa9.95□□□□□ -0.82
SYNE3-205ENST00000557275 UBL4BQ8N7F7 174 aa9.95□□□□□ -0.82
SYNE3-205ENST00000557275 CCDC68Q9H2F9 335 aa9.95□□□□□ -0.82
SYNE3-205ENST00000557275 SYF2O95926 243 aaKnown RBP9.95□□□□□ -0.82
SYNE3-205ENST00000557275 HOXA7P31268 230 aaPredicted RBP9.95□□□□□ -0.82
SYNE3-205ENST00000557275 DBN1Q16643 649 aa9.95□□□□□ -0.82
SYNE3-205ENST00000557275 A0A1B0GW55 424 aa9.95□□□□□ -0.82
SYNE3-205ENST00000557275 ZEB2O60315 1214 aa9.95□□□□□ -0.82
SYNE3-205ENST00000557275 DUX4L2P0CJ85 424 aa9.95□□□□□ -0.82
SYNE3-205ENST00000557275 DUX4L3P0CJ86 424 aa9.95□□□□□ -0.82
SYNE3-205ENST00000557275 DUX4L4P0CJ87 422 aa9.95□□□□□ -0.82
SYNE3-205ENST00000557275 DUX4L5P0CJ88 424 aa9.95□□□□□ -0.82
SYNE3-205ENST00000557275 DUX4L6P0CJ89 424 aa9.95□□□□□ -0.82
SYNE3-205ENST00000557275 DUX4L7P0CJ90 424 aa9.95□□□□□ -0.82
SYNE3-205ENST00000557275 ZSCAN29Q8IWY8 852 aaPredicted RBP9.95□□□□□ -0.82
SYNE3-205ENST00000557275 FAM200AQ8TCP9 573 aa9.95□□□□□ -0.82
SYNE3-205ENST00000557275 DUX4Q9UBX2 424 aa9.95□□□□□ -0.82
SYNE3-205ENST00000557275 ORC6Q9Y5N6 252 aa9.95□□□□□ -0.82
SYNE3-205ENST00000557275 MYO1BO43795 1136 aa9.95□□□□□ -0.82
SYNE3-205ENST00000557275 RLBP1P12271 317 aa9.95□□□□□ -0.82
SYNE3-205ENST00000557275 ERCC3P19447 782 aa9.95□□□□□ -0.82
SYNE3-205ENST00000557275 RAP1GDS1P52306 607 aa9.95□□□□□ -0.82
SYNE3-205ENST00000557275 DAAM1Q9Y4D1 1078 aa9.95□□□□□ -0.82
SYNE3-205ENST00000557275 TRIM60Q495X7 471 aa9.95□□□□□ -0.82
SYNE3-205ENST00000557275 EPS15L1Q9UBC2 864 aa9.95□□□□□ -0.82
SYNE3-205ENST00000557275 HELBQ8NG08 1087 aaPredicted RBP9.94□□□□□ -0.82
SYNE3-205ENST00000557275 MKNK2Q9HBH9 465 aa9.94□□□□□ -0.82
SYNE3-205ENST00000557275 GOLGA6CA6NDK9 693 aa9.94□□□□□ -0.82
SYNE3-205ENST00000557275 GOLGA6BA6NDN3 693 aa9.94□□□□□ -0.82
SYNE3-205ENST00000557275 GOLGA6DP0CG33 693 aa9.94□□□□□ -0.82
SYNE3-205ENST00000557275 ARHGAP4P98171 946 aa9.94□□□□□ -0.82
SYNE3-205ENST00000557275 OSCARQ8IYS5 282 aa9.94□□□□□ -0.82
SYNE3-205ENST00000557275 GOLGA6AQ9NYA3 693 aa9.94□□□□□ -0.82
SYNE3-205ENST00000557275 TSKSQ9UJT2 592 aa9.94□□□□□ -0.82
SYNE3-205ENST00000557275 NDUFAB1O14561 156 aa9.94□□□□□ -0.82
SYNE3-205ENST00000557275 ZNF526Q8TF50 670 aaPredicted RBP9.94□□□□□ -0.82
SYNE3-205ENST00000557275 PUF60Q9UHX1 559 aaKnown RBP9.94□□□□□ -0.82
SYNE3-205ENST00000557275 ANKRD30BQ9BXX2 1392 aa9.94□□□□□ -0.82
SYNE3-205ENST00000557275 CEP104O60308 925 aa9.94□□□□□ -0.82
SYNE3-205ENST00000557275 DNA2P51530 1060 aa9.94□□□□□ -0.82
SYNE3-205ENST00000557275 ITIH3Q06033 890 aa9.94□□□□□ -0.82
SYNE3-205ENST00000557275 AK9Q5TCS8 1911 aa9.94□□□□□ -0.82
SYNE3-205ENST00000557275 GSDMBQ8TAX9 411 aa9.94□□□□□ -0.82
SYNE3-205ENST00000557275 PARP2Q9UGN5 583 aa9.94□□□□□ -0.82
SYNE3-205ENST00000557275 CWC27Q6UX04 472 aaKnown RBP9.94□□□□□ -0.82
SYNE3-205ENST00000557275 IFT20Q8IY31 132 aa9.94□□□□□ -0.82
SYNE3-205ENST00000557275 SPG7Q9UQ90 795 aa9.94□□□□□ -0.82
SYNE3-205ENST00000557275 CRACR2BQ8N4Y2 399 aaPredicted RBP9.94□□□□□ -0.82
SYNE3-205ENST00000557275 ARHGEF2Q92974 986 aaKnown RBP9.94□□□□□ -0.82
SYNE3-205ENST00000557275 PPP1R1BQ9UD71 204 aaPredicted RBP9.94□□□□□ -0.82
SYNE3-205ENST00000557275 ATL3Q6DD88 541 aa9.94□□□□□ -0.82
SYNE3-205ENST00000557275 ATP6V1AP38606 617 aa9.94□□□□□ -0.82
SYNE3-205ENST00000557275 E9PMD0 336 aa9.94□□□□□ -0.82
SYNE3-205ENST00000557275 LMNB2Q03252 620 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms