RNA–Protein interactions for RNA: ENST00000556897.5

HNRNPC-227, Transcript of heterogeneous nuclear ribonucleoprotein C (C1/C2), humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HNRNPC, Length 1,252 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HNRNPC-227ENST00000556897 RTL5Q5HYW3 569 aaPredicted RBP11.81□□□□□ -0.52
HNRNPC-227ENST00000556897 C2orf69Q8N8R5 385 aa11.81□□□□□ -0.52
HNRNPC-227ENST00000556897 CCDC102AQ96A19 550 aa11.81□□□□□ -0.52
HNRNPC-227ENST00000556897 COL4A1P02462 1669 aa11.81□□□□□ -0.52
HNRNPC-227ENST00000556897 DDX60Q8IY21 1712 aaKnown RBP11.8□□□□□ -0.52
HNRNPC-227ENST00000556897 TRPA1O75762 1119 aa11.8□□□□□ -0.52
HNRNPC-227ENST00000556897 RPS12P25398 132 aaKnown RBP11.8□□□□□ -0.52
HNRNPC-227ENST00000556897 KIF4BQ2VIQ3 1234 aa11.8□□□□□ -0.52
HNRNPC-227ENST00000556897 ANKRD13DQ6ZTN6 518 aa11.8□□□□□ -0.52
HNRNPC-227ENST00000556897 PLBD2Q8NHP8 589 aa11.8□□□□□ -0.52
HNRNPC-227ENST00000556897 RNF186Q9NXI6 227 aa11.8□□□□□ -0.52
HNRNPC-227ENST00000556897 SAGE1Q9NXZ1 904 aa11.8□□□□□ -0.52
HNRNPC-227ENST00000556897 ASTN2O75129 1339 aaPredicted RBP11.8□□□□□ -0.52
HNRNPC-227ENST00000556897 CHL1O00533 1208 aa11.79□□□□□ -0.52
HNRNPC-227ENST00000556897 SOX10P56693 466 aa11.79□□□□□ -0.52
HNRNPC-227ENST00000556897 NEUROD2Q15784 382 aa11.79□□□□□ -0.52
HNRNPC-227ENST00000556897 HDGFL1Q5TGJ6 251 aa11.79□□□□□ -0.52
HNRNPC-227ENST00000556897 SULF1Q8IWU6 871 aa11.79□□□□□ -0.52
HNRNPC-227ENST00000556897 TBC1D16Q8TBP0 767 aa11.79□□□□□ -0.52
HNRNPC-227ENST00000556897 EYA3Q99504 573 aa11.79□□□□□ -0.52
HNRNPC-227ENST00000556897 ISCA1Q9BUE6 129 aa11.79□□□□□ -0.52
HNRNPC-227ENST00000556897 GGA3Q9NZ52 723 aa11.79□□□□□ -0.52
HNRNPC-227ENST00000556897 LAS1LQ9Y4W2 734 aaKnown RBP11.79□□□□□ -0.52
HNRNPC-227ENST00000556897 SLC10A3P09131 477 aa11.78□□□□□ -0.52
HNRNPC-227ENST00000556897 RPS8P62241 208 aaKnown RBP11.78□□□□□ -0.52
HNRNPC-227ENST00000556897 CCDC146Q8IYE0 955 aa11.78□□□□□ -0.52
HNRNPC-227ENST00000556897 CSRNP1Q96S65 589 aa11.78□□□□□ -0.52
HNRNPC-227ENST00000556897 SCN9AQ15858 1988 aa11.78□□□□□ -0.52
HNRNPC-227ENST00000556897 TNRC18O15417 2968 aaPredicted RBP11.77□□□□□ -0.52
HNRNPC-227ENST00000556897 IRS4O14654 1257 aaPredicted RBP11.77□□□□□ -0.53
HNRNPC-227ENST00000556897 VIL1P09327 827 aaKnown RBP11.77□□□□□ -0.53
HNRNPC-227ENST00000556897 CDCA5Q96FF9 252 aa11.77□□□□□ -0.53
HNRNPC-227ENST00000556897 ZC3H12CQ9C0D7 883 aaKnown RBP11.77□□□□□ -0.53
HNRNPC-227ENST00000556897 DBF4Q9UBU7 674 aaPredicted RBP11.77□□□□□ -0.53
HNRNPC-227ENST00000556897 G3V3G9 751 aa11.76□□□□□ -0.53
HNRNPC-227ENST00000556897 UFL1O94874 794 aa11.76□□□□□ -0.53
HNRNPC-227ENST00000556897 DCAF8Q5TAQ9 597 aa11.76□□□□□ -0.53
HNRNPC-227ENST00000556897 ANGEL2Q5VTE6 544 aaKnown RBP11.76□□□□□ -0.53
HNRNPC-227ENST00000556897 SEC31BQ9NQW1 1179 aa11.76□□□□□ -0.53
HNRNPC-227ENST00000556897 PCDH10Q9P2E7 1040 aa11.76□□□□□ -0.53
HNRNPC-227ENST00000556897 ANKIB1Q9P2G1 1089 aa11.76□□□□□ -0.53
HNRNPC-227ENST00000556897 AKAP11Q9UKA4 1901 aa11.76□□□□□ -0.53
HNRNPC-227ENST00000556897 HOXB7P09629 217 aa11.75□□□□□ -0.53
HNRNPC-227ENST00000556897 ZNF280AP59817 542 aaPredicted RBP11.75□□□□□ -0.53
HNRNPC-227ENST00000556897 TRIM28Q13263 835 aaKnown RBP11.75□□□□□ -0.53
HNRNPC-227ENST00000556897 SCARF1Q14162 830 aa11.75□□□□□ -0.53
HNRNPC-227ENST00000556897 CTU1Q7Z7A3 348 aaKnown RBP11.75□□□□□ -0.53
HNRNPC-227ENST00000556897 RASAL3Q86YV0 1011 aa11.75□□□□□ -0.53
HNRNPC-227ENST00000556897 HYPKQ9NX55 129 aa11.75□□□□□ -0.53
HNRNPC-227ENST00000556897 PODXL2Q9NZ53 605 aa11.75□□□□□ -0.53
HNRNPC-227ENST00000556897 TRIM35Q9UPQ4 493 aa11.75□□□□□ -0.53
HNRNPC-227ENST00000556897 DUSP27Q5VZP5 1158 aa11.74□□□□□ -0.53
HNRNPC-227ENST00000556897 RSBN1LQ6PCB5 846 aaPredicted RBP11.74□□□□□ -0.53
HNRNPC-227ENST00000556897 ZBTB38Q8NAP3 1195 aaPredicted RBP11.74□□□□□ -0.53
HNRNPC-227ENST00000556897 AGBL3Q8NEM8 1001 aa11.74□□□□□ -0.53
HNRNPC-227ENST00000556897 RTN4Q9NQC3 1192 aaKnown RBP11.74□□□□□ -0.53
HNRNPC-227ENST00000556897 GGA1Q9UJY5 639 aa11.74□□□□□ -0.53
HNRNPC-227ENST00000556897 SCAF8Q9UPN6 1271 aaKnown RBP11.74□□□□□ -0.53
HNRNPC-227ENST00000556897 USP17L8P0C7I0 530 aa11.73□□□□□ -0.53
HNRNPC-227ENST00000556897 FKBP1BP68106 108 aa11.73□□□□□ -0.53
HNRNPC-227ENST00000556897 RALBP1Q15311 655 aa11.73□□□□□ -0.53
HNRNPC-227ENST00000556897 MOB2Q70IA6 237 aa11.73□□□□□ -0.53
HNRNPC-227ENST00000556897 RIC3Q7Z5B4 369 aa11.73□□□□□ -0.53
HNRNPC-227ENST00000556897 REM2Q8IYK8 340 aaPredicted RBP11.73□□□□□ -0.53
HNRNPC-227ENST00000556897 CCDC85AQ96PX6 553 aaPredicted RBP11.73□□□□□ -0.53
HNRNPC-227ENST00000556897 ZNF609O15014 1411 aa11.72□□□□□ -0.53
HNRNPC-227ENST00000556897 GOLGA2Q08379 1002 aa11.72□□□□□ -0.53
HNRNPC-227ENST00000556897 CCDC152Q4G0S7 254 aa11.72□□□□□ -0.53
HNRNPC-227ENST00000556897 JARID2Q92833 1246 aaPredicted RBP11.72□□□□□ -0.53
HNRNPC-227ENST00000556897 RUNDC1Q96C34 613 aa11.72□□□□□ -0.53
HNRNPC-227ENST00000556897 GMLQ99445 158 aa11.72□□□□□ -0.53
HNRNPC-227ENST00000556897 PHAXQ9H814 394 aaKnown RBP11.72□□□□□ -0.53
HNRNPC-227ENST00000556897 MYOZ2Q9NPC6 264 aa11.72□□□□□ -0.53
HNRNPC-227ENST00000556897 HPS5Q9UPZ3 1129 aa11.72□□□□□ -0.53
HNRNPC-227ENST00000556897 UBE2Q2LH0YL09 131 aa11.71□□□□□ -0.53
HNRNPC-227ENST00000556897 HSP90B1P14625 803 aaKnown RBP11.71□□□□□ -0.53
HNRNPC-227ENST00000556897 PRAMEF18Q5VWM3 479 aa11.71□□□□□ -0.53
HNRNPC-227ENST00000556897 MYD88Q99836 296 aa11.71□□□□□ -0.53
HNRNPC-227ENST00000556897 MBIPQ9NS73 344 aa11.71□□□□□ -0.53
HNRNPC-227ENST00000556897 PAPPA2Q9BXP8 1791 aa11.71□□□□□ -0.54
HNRNPC-227ENST00000556897 XDHP47989 1333 aa11.7□□□□□ -0.54
HNRNPC-227ENST00000556897 PITPNM2Q9BZ72 1349 aa11.7□□□□□ -0.54
HNRNPC-227ENST00000556897 USP17L3A6NCW0 530 aa11.7□□□□□ -0.54
HNRNPC-227ENST00000556897 USP17L4A6NCW7 530 aa11.7□□□□□ -0.54
HNRNPC-227ENST00000556897 WTIPA6NIX2 430 aaPredicted RBP11.7□□□□□ -0.54
HNRNPC-227ENST00000556897 PDE8AO60658 829 aa11.7□□□□□ -0.54
HNRNPC-227ENST00000556897 TBC1D8O95759 1140 aa11.7□□□□□ -0.54
HNRNPC-227ENST00000556897 PCCAP05165 728 aaPredicted RBP11.7□□□□□ -0.54
HNRNPC-227ENST00000556897 PRPF38BQ5VTL8 546 aaKnown RBP11.7□□□□□ -0.54
HNRNPC-227ENST00000556897 USP17L1Q7RTZ2 530 aa11.7□□□□□ -0.54
HNRNPC-227ENST00000556897 ANKRD18AQ8IVF6 992 aa11.7□□□□□ -0.54
HNRNPC-227ENST00000556897 ZNF296Q8WUU4 475 aaPredicted RBP11.7□□□□□ -0.54
HNRNPC-227ENST00000556897 HDAC9Q9UKV0 1011 aa11.7□□□□□ -0.54
HNRNPC-227ENST00000556897 MYBBP1AQ9BQG0 1328 aaKnown RBP11.69□□□□□ -0.54
HNRNPC-227ENST00000556897 ELL2O00472 640 aaPredicted RBP11.69□□□□□ -0.54
HNRNPC-227ENST00000556897 ATP2B4P23634 1241 aa11.69□□□□□ -0.54
HNRNPC-227ENST00000556897 TTLL12Q14166 644 aaPredicted RBP11.69□□□□□ -0.54
HNRNPC-227ENST00000556897 WDR43Q15061 677 aaKnown RBP eCLIP11.69□□□□□ -0.54
HNRNPC-227ENST00000556897 PKN2Q16513 984 aaKnown RBP11.69□□□□□ -0.54
HNRNPC-227ENST00000556897 NBPF9Q3BBW0 867 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms