RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 GPTP24298 496 aa13.31□□□□□ -0.28
SCFD1-220ENST00000556486 PPP2R1AP30153 589 aa13.31□□□□□ -0.28
SCFD1-220ENST00000556486 PDE4DQ08499 809 aa13.31□□□□□ -0.28
SCFD1-220ENST00000556486 AOC3Q16853 763 aa13.31□□□□□ -0.28
SCFD1-220ENST00000556486 C3orf67Q6ZVT6 689 aa13.31□□□□□ -0.28
SCFD1-220ENST00000556486 USP50Q70EL3 339 aaPredicted RBP13.31□□□□□ -0.28
SCFD1-220ENST00000556486 SAPCD2Q86UD0 394 aa13.31□□□□□ -0.28
SCFD1-220ENST00000556486 NIM1KQ8IY84 436 aa13.31□□□□□ -0.28
SCFD1-220ENST00000556486 PCDH10Q9P2E7 1040 aa13.31□□□□□ -0.28
SCFD1-220ENST00000556486 PPIP5K2O43314 1243 aa13.3□□□□□ -0.28
SCFD1-220ENST00000556486 MIS18AQ9NYP9 233 aa13.3□□□□□ -0.28
SCFD1-220ENST00000556486 SHTN1A0MZ66 631 aa13.29□□□□□ -0.28
SCFD1-220ENST00000556486 PPEF1O14829 653 aaPredicted RBP13.29□□□□□ -0.28
SCFD1-220ENST00000556486 MAP2K2P36507 400 aa13.29□□□□□ -0.28
SCFD1-220ENST00000556486 GMPSP49915 693 aaPredicted RBP13.29□□□□□ -0.28
SCFD1-220ENST00000556486 PPP1R15BQ5SWA1 713 aa13.29□□□□□ -0.28
SCFD1-220ENST00000556486 LAMB4A4D0S4 1761 aa13.29□□□□□ -0.28
SCFD1-220ENST00000556486 CRY2Q49AN0 593 aa13.28□□□□□ -0.28
SCFD1-220ENST00000556486 ADARB2Q9NS39 739 aaKnown RBP13.28□□□□□ -0.28
SCFD1-220ENST00000556486 GPRC5DQ9NZD1 345 aa13.28□□□□□ -0.28
SCFD1-220ENST00000556486 PDE4DIPQ5VU43 2346 aa13.27□□□□□ -0.28
SCFD1-220ENST00000556486 U2AF1L5P0DN76 240 aaPredicted RBP13.27□□□□□ -0.29
SCFD1-220ENST00000556486 U2AF1Q01081 240 aaKnown RBP eCLIP13.27□□□□□ -0.29
SCFD1-220ENST00000556486 CXCL9Q07325 125 aa13.27□□□□□ -0.29
SCFD1-220ENST00000556486 TTLL7Q6ZT98 887 aa13.27□□□□□ -0.29
SCFD1-220ENST00000556486 TRPM4Q8TD43 1214 aa13.27□□□□□ -0.29
SCFD1-220ENST00000556486 RTF1Q92541 710 aaKnown RBP13.27□□□□□ -0.29
SCFD1-220ENST00000556486 ZBTB3Q9H5J0 574 aa13.27□□□□□ -0.29
SCFD1-220ENST00000556486 RRP7AQ9Y3A4 280 aaKnown RBP13.27□□□□□ -0.29
SCFD1-220ENST00000556486 UBN2Q6ZU65 1347 aa13.27□□□□□ -0.29
SCFD1-220ENST00000556486 RAD17O75943 681 aa13.26□□□□□ -0.29
SCFD1-220ENST00000556486 MYL6BP14649 208 aa13.26□□□□□ -0.29
SCFD1-220ENST00000556486 HIRAP54198 1017 aaPredicted RBP13.26□□□□□ -0.29
SCFD1-220ENST00000556486 RBM17Q96I25 401 aaKnown RBP13.26□□□□□ -0.29
SCFD1-220ENST00000556486 NYXQ9GZU5 481 aa13.26□□□□□ -0.29
SCFD1-220ENST00000556486 GPHNQ9NQX3 736 aaPredicted RBP13.26□□□□□ -0.29
SCFD1-220ENST00000556486 TAF1P21675 1872 aa13.25□□□□□ -0.29
SCFD1-220ENST00000556486 CA12O43570 354 aa13.25□□□□□ -0.29
SCFD1-220ENST00000556486 SUSD4Q5VX71 490 aa13.25□□□□□ -0.29
SCFD1-220ENST00000556486 USP48Q86UV5 1035 aa13.25□□□□□ -0.29
SCFD1-220ENST00000556486 ZNF428Q96B54 188 aa13.25□□□□□ -0.29
SCFD1-220ENST00000556486 BCL2L13Q9BXK5 485 aa13.25□□□□□ -0.29
SCFD1-220ENST00000556486 LAMB2P55268 1798 aa13.25□□□□□ -0.29
SCFD1-220ENST00000556486 RIC1Q4ADV7 1423 aa13.24□□□□□ -0.29
SCFD1-220ENST00000556486 SPDYE16A6NNV3 312 aaPredicted RBP13.24□□□□□ -0.29
SCFD1-220ENST00000556486 DPYSL4O14531 572 aa13.24□□□□□ -0.29
SCFD1-220ENST00000556486 HOXA10P31260 410 aaPredicted RBP13.24□□□□□ -0.29
SCFD1-220ENST00000556486 HUNKP57058 714 aa13.24□□□□□ -0.29
SCFD1-220ENST00000556486 TAF7Q15545 349 aaPredicted RBP13.24□□□□□ -0.29
SCFD1-220ENST00000556486 CC2D2BQ6DHV5 1058 aa13.24□□□□□ -0.29
SCFD1-220ENST00000556486 MAP3K15Q6ZN16 1313 aa13.23□□□□□ -0.29
SCFD1-220ENST00000556486 ZNRF3Q9ULT6 936 aa13.23□□□□□ -0.29
SCFD1-220ENST00000556486 ABCC4O15439 1325 aa13.22□□□□□ -0.29
SCFD1-220ENST00000556486 POLR2AP24928 1970 aaKnown RBP13.22□□□□□ -0.29
SCFD1-220ENST00000556486 TRPA1O75762 1119 aa13.22□□□□□ -0.29
SCFD1-220ENST00000556486 NTSR2O95665 410 aa13.22□□□□□ -0.29
SCFD1-220ENST00000556486 KIF6Q6ZMV9 814 aa13.22□□□□□ -0.29
SCFD1-220ENST00000556486 PNISRQ8TF01 805 aaKnown RBP13.22□□□□□ -0.29
SCFD1-220ENST00000556486 CRAMP1Q96RY5 1269 aa13.22□□□□□ -0.29
SCFD1-220ENST00000556486 PLEKHF1Q96S99 279 aa13.22□□□□□ -0.29
SCFD1-220ENST00000556486 DLG5Q8TDM6 1919 aa13.21□□□□□ -0.29
SCFD1-220ENST00000556486 EGFRP00533 1210 aa13.21□□□□□ -0.29
SCFD1-220ENST00000556486 NOGQ13253 232 aa13.21□□□□□ -0.29
SCFD1-220ENST00000556486 PDIA6Q15084 440 aa13.21□□□□□ -0.29
SCFD1-220ENST00000556486 SAMD7Q7Z3H4 446 aa13.21□□□□□ -0.29
SCFD1-220ENST00000556486 ATP6V0A2Q9Y487 856 aa13.21□□□□□ -0.29
SCFD1-220ENST00000556486 KDM3BQ7LBC6 1761 aa13.21□□□□□ -0.29
SCFD1-220ENST00000556486 AKAP11Q9UKA4 1901 aa13.2□□□□□ -0.3
SCFD1-220ENST00000556486 YDJCA8MPS7 323 aa13.2□□□□□ -0.3
SCFD1-220ENST00000556486 ERVV-1B6SEH8 477 aa13.2□□□□□ -0.3
SCFD1-220ENST00000556486 ADM5C9JUS6 153 aa13.2□□□□□ -0.3
SCFD1-220ENST00000556486 KIF23Q02241 960 aaPredicted RBP13.2□□□□□ -0.3
SCFD1-220ENST00000556486 DPP8Q6V1X1 898 aaPredicted RBP13.2□□□□□ -0.3
SCFD1-220ENST00000556486 CDC37L1Q7L3B6 337 aa13.2□□□□□ -0.3
SCFD1-220ENST00000556486 MICALL2Q8IY33 904 aa13.2□□□□□ -0.3
SCFD1-220ENST00000556486 HHIPL1Q96JK4 782 aa13.2□□□□□ -0.3
SCFD1-220ENST00000556486 THUMPD2Q9BTF0 503 aaKnown RBP13.2□□□□□ -0.3
SCFD1-220ENST00000556486 TMX4Q9H1E5 349 aaPredicted RBP13.2□□□□□ -0.3
SCFD1-220ENST00000556486 EMILIN3Q9NT22 766 aa13.2□□□□□ -0.3
SCFD1-220ENST00000556486 PODXL2Q9NZ53 605 aa13.2□□□□□ -0.3
SCFD1-220ENST00000556486 CNOT7Q9UIV1 285 aaKnown RBP13.2□□□□□ -0.3
SCFD1-220ENST00000556486 FAM155AB1AL88 458 aaPredicted RBP13.19□□□□□ -0.3
SCFD1-220ENST00000556486 TBC1D10BQ4KMP7 808 aaPredicted RBP13.19□□□□□ -0.3
SCFD1-220ENST00000556486 RGMBQ6NW40 437 aa13.19□□□□□ -0.3
SCFD1-220ENST00000556486 ZNF34Q8IZ26 560 aa13.19□□□□□ -0.3
SCFD1-220ENST00000556486 PGAP2Q9UHJ9 254 aa13.19□□□□□ -0.3
SCFD1-220ENST00000556486 IBTKQ9P2D0 1353 aaPredicted RBP13.19□□□□□ -0.3
SCFD1-220ENST00000556486 ANXA1P04083 346 aa13.18□□□□□ -0.3
SCFD1-220ENST00000556486 NEFMP07197 916 aa13.18□□□□□ -0.3
SCFD1-220ENST00000556486 HCLS1P14317 486 aaPredicted RBP13.18□□□□□ -0.3
SCFD1-220ENST00000556486 ZNF157P51786 506 aaPredicted RBP13.18□□□□□ -0.3
SCFD1-220ENST00000556486 EIF4A1P60842 406 aaKnown RBP13.18□□□□□ -0.3
SCFD1-220ENST00000556486 NFE2L2Q16236 605 aa13.18□□□□□ -0.3
SCFD1-220ENST00000556486 GRIPAP1Q4V328 841 aa13.18□□□□□ -0.3
SCFD1-220ENST00000556486 KRT26Q7Z3Y9 468 aa13.18□□□□□ -0.3
SCFD1-220ENST00000556486 NLRP3Q96P20 1036 aa13.18□□□□□ -0.3
SCFD1-220ENST00000556486 RNF186Q9NXI6 227 aa13.18□□□□□ -0.3
SCFD1-220ENST00000556486 DUOX1Q9NRD9 1551 aa13.18□□□□□ -0.3
SCFD1-220ENST00000556486 ERBB4Q15303 1308 aa13.17□□□□□ -0.3
SCFD1-220ENST00000556486 GPR37O15354 613 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms