RNA–Protein interactions for RNA: ENST00000555612.5

SYNE2-220, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 6,766 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-220ENST00000555612 EIF4G3O43432 1585 aaKnown RBP9.45□□□□□ -0.9
SYNE2-220ENST00000555612 HCLS1P14317 486 aaPredicted RBP9.45□□□□□ -0.9
SYNE2-220ENST00000555612 GPR162Q16538 588 aa9.45□□□□□ -0.9
SYNE2-220ENST00000555612 RTN1Q16799 776 aa9.45□□□□□ -0.9
SYNE2-220ENST00000555612 CCDC148Q8NFR7 591 aa9.45□□□□□ -0.9
SYNE2-220ENST00000555612 TSPYL1Q9H0U9 437 aa9.45□□□□□ -0.9
SYNE2-220ENST00000555612 WDR70Q9NW82 654 aa9.45□□□□□ -0.9
SYNE2-220ENST00000555612 PAG1Q9NWQ8 432 aa9.45□□□□□ -0.9
SYNE2-220ENST00000555612 CTNNA2P26232 953 aa9.45□□□□□ -0.9
SYNE2-220ENST00000555612 TCEANC2Q96MN5 208 aa9.45□□□□□ -0.9
SYNE2-220ENST00000555612 MAP3K19Q56UN5 1328 aa9.45□□□□□ -0.9
SYNE2-220ENST00000555612 FAM89AQ96GI7 184 aa9.45□□□□□ -0.9
SYNE2-220ENST00000555612 NUP88Q99567 741 aaPredicted RBP9.45□□□□□ -0.9
SYNE2-220ENST00000555612 SAP30BPQ9UHR5 308 aaKnown RBP9.45□□□□□ -0.9
SYNE2-220ENST00000555612 RAB3GAP1Q15042 981 aa9.45□□□□□ -0.9
SYNE2-220ENST00000555612 KRT24Q2M2I5 525 aa9.45□□□□□ -0.9
SYNE2-220ENST00000555612 TTC22Q5TAA0 569 aa9.45□□□□□ -0.9
SYNE2-220ENST00000555612 MAP7D2Q96T17 732 aa9.45□□□□□ -0.9
SYNE2-220ENST00000555612 TCHPQ9BT92 498 aa9.45□□□□□ -0.9
SYNE2-220ENST00000555612 MSL1Q68DK7 614 aa9.44□□□□□ -0.9
SYNE2-220ENST00000555612 TBC1D9Q6ZT07 1266 aa9.44□□□□□ -0.9
SYNE2-220ENST00000555612 SPDYE3A6NKU9 549 aa9.44□□□□□ -0.9
SYNE2-220ENST00000555612 EZRP15311 586 aaKnown RBP9.44□□□□□ -0.9
SYNE2-220ENST00000555612 MCMDC2Q4G0Z9 681 aa9.44□□□□□ -0.9
SYNE2-220ENST00000555612 PICK1Q9NRD5 415 aa9.44□□□□□ -0.9
SYNE2-220ENST00000555612 ZBTB21Q9ULJ3 1066 aa9.44□□□□□ -0.9
SYNE2-220ENST00000555612 GNAQP50148 359 aa9.44□□□□□ -0.9
SYNE2-220ENST00000555612 TFCP2Q12800 502 aa9.44□□□□□ -0.9
SYNE2-220ENST00000555612 YTHDC2Q9H6S0 1430 aaKnown RBP9.44□□□□□ -0.9
SYNE2-220ENST00000555612 EAPPQ56P03 285 aaPredicted RBP9.44□□□□□ -0.9
SYNE2-220ENST00000555612 CCDC191Q8NCU4 936 aa9.44□□□□□ -0.9
SYNE2-220ENST00000555612 PHACTR2O75167 634 aa9.44□□□□□ -0.9
SYNE2-220ENST00000555612 CCDC87Q9NVE4 849 aa9.44□□□□□ -0.9
SYNE2-220ENST00000555612 COMMD10Q9Y6G5 202 aa9.44□□□□□ -0.9
SYNE2-220ENST00000555612 ISM2Q6H9L7 571 aa9.43□□□□□ -0.9
SYNE2-220ENST00000555612 DPP8Q6V1X1 898 aaPredicted RBP9.43□□□□□ -0.9
SYNE2-220ENST00000555612 TMTC2Q8N394 836 aa9.43□□□□□ -0.9
SYNE2-220ENST00000555612 PSMD1Q99460 953 aa9.43□□□□□ -0.9
SYNE2-220ENST00000555612 GGA1Q9UJY5 639 aa9.43□□□□□ -0.9
SYNE2-220ENST00000555612 TOP1P11387 765 aaKnown RBP9.43□□□□□ -0.9
SYNE2-220ENST00000555612 ERLIN1O75477 346 aa9.43□□□□□ -0.9
SYNE2-220ENST00000555612 SFPQP23246 707 aaKnown RBP eCLIP9.43□□□□□ -0.9
SYNE2-220ENST00000555612 ALG1Q9BT22 464 aa9.43□□□□□ -0.9
SYNE2-220ENST00000555612 LRRC27Q9C0I9 530 aa9.43□□□□□ -0.9
SYNE2-220ENST00000555612 C6orf50Q9HD87 102 aa9.43□□□□□ -0.9
SYNE2-220ENST00000555612 PLEKHH1Q9ULM0 1364 aa9.43□□□□□ -0.9
SYNE2-220ENST00000555612 ATP8B2P98198 1209 aa9.43□□□□□ -0.9
SYNE2-220ENST00000555612 TEX11Q8IYF3 940 aa9.43□□□□□ -0.9
SYNE2-220ENST00000555612 NECAB1Q8N987 351 aa9.43□□□□□ -0.9
SYNE2-220ENST00000555612 RRP36Q96EU6 259 aaKnown RBP9.43□□□□□ -0.9
SYNE2-220ENST00000555612 EXOC1Q9NV70 894 aa9.43□□□□□ -0.9
SYNE2-220ENST00000555612 GSTTP1A0A1W2PQM5 241 aa9.43□□□□□ -0.9
SYNE2-220ENST00000555612 STX6O43752 255 aa9.43□□□□□ -0.9
SYNE2-220ENST00000555612 ZNF354CQ86Y25 554 aa9.43□□□□□ -0.9
SYNE2-220ENST00000555612 MRPL50Q8N5N7 158 aaKnown RBP9.43□□□□□ -0.9
SYNE2-220ENST00000555612 BCS1LQ9Y276 419 aa9.43□□□□□ -0.9
SYNE2-220ENST00000555612 GDPD2Q9HCC8 539 aa9.42□□□□□ -0.9
SYNE2-220ENST00000555612 TMOD4Q9NZQ9 345 aa9.42□□□□□ -0.9
SYNE2-220ENST00000555612 MCM4P33991 863 aa9.42□□□□□ -0.9
SYNE2-220ENST00000555612 PARP10Q53GL7 1025 aa9.42□□□□□ -0.9
SYNE2-220ENST00000555612 SYNCQ9H7C4 482 aa9.42□□□□□ -0.9
SYNE2-220ENST00000555612 SH3TC1Q8TE82 1336 aa9.42□□□□□ -0.9
SYNE2-220ENST00000555612 RNF113AO15541 343 aaKnown RBP9.42□□□□□ -0.9
SYNE2-220ENST00000555612 NCBP1Q09161 790 aaKnown RBP9.42□□□□□ -0.9
SYNE2-220ENST00000555612 TTC6Q86TZ1 520 aa9.42□□□□□ -0.9
SYNE2-220ENST00000555612 FAM212AQ96EL1 285 aa9.42□□□□□ -0.9
SYNE2-220ENST00000555612 GRPEL1Q9HAV7 217 aa9.42□□□□□ -0.9
SYNE2-220ENST00000555612 PKD2L1Q9P0L9 805 aa9.42□□□□□ -0.9
SYNE2-220ENST00000555612 NOD1Q9Y239 953 aa9.42□□□□□ -0.9
SYNE2-220ENST00000555612 RBM8AQ9Y5S9 174 aaKnown RBP9.42□□□□□ -0.9
SYNE2-220ENST00000555612 ADGRL2O95490 1459 aa9.42□□□□□ -0.9
SYNE2-220ENST00000555612 GNAT2P19087 354 aa9.42□□□□□ -0.9
SYNE2-220ENST00000555612 NMIQ13287 307 aaPredicted RBP9.42□□□□□ -0.9
SYNE2-220ENST00000555612 ARHGAP45Q92619 1136 aa9.42□□□□□ -0.9
SYNE2-220ENST00000555612 BACH1O14867 736 aa9.42□□□□□ -0.9
SYNE2-220ENST00000555612 ZYXQ15942 572 aaKnown RBP9.42□□□□□ -0.9
SYNE2-220ENST00000555612 YEATS4O95619 227 aa9.42□□□□□ -0.9
SYNE2-220ENST00000555612 ITGA6P23229 1130 aa9.42□□□□□ -0.9
SYNE2-220ENST00000555612 DENND2AQ9ULE3 1009 aa9.42□□□□□ -0.9
SYNE2-220ENST00000555612 HIBADHP31937 336 aaKnown RBP9.41□□□□□ -0.9
SYNE2-220ENST00000555612 CCDC183Q5T5S1 534 aa9.41□□□□□ -0.9
SYNE2-220ENST00000555612 A0A1W2PP64 1363 aa9.41□□□□□ -0.9
SYNE2-220ENST00000555612 KIAA0556O60303 1618 aa9.41□□□□□ -0.9
SYNE2-220ENST00000555612 ZNF790Q6PG37 636 aa9.41□□□□□ -0.9
SYNE2-220ENST00000555612 DPH6Q7L8W6 267 aa9.41□□□□□ -0.9
SYNE2-220ENST00000555612 PHACTR3Q96KR7 559 aa9.41□□□□□ -0.9
SYNE2-220ENST00000555612 BICC1Q9H694 974 aaKnown RBP9.41□□□□□ -0.9
SYNE2-220ENST00000555612 ABCC2Q92887 1545 aa9.41□□□□□ -0.9
SYNE2-220ENST00000555612 SSFA2P28290 1259 aa9.41□□□□□ -0.9
SYNE2-220ENST00000555612 STAT6P42226 847 aa9.41□□□□□ -0.9
SYNE2-220ENST00000555612 AFMP43652 599 aa9.41□□□□□ -0.9
SYNE2-220ENST00000555612 RBM25P49756 843 aaKnown RBP9.41□□□□□ -0.9
SYNE2-220ENST00000555612 TRIM47Q96LD4 638 aa9.41□□□□□ -0.9
SYNE2-220ENST00000555612 PYM1Q9BRP8 204 aaKnown RBP9.41□□□□□ -0.9
SYNE2-220ENST00000555612 SH2D4AQ9H788 454 aa9.41□□□□□ -0.9
SYNE2-220ENST00000555612 ATP10AO60312 1499 aa9.41□□□□□ -0.9
SYNE2-220ENST00000555612 ARAP3Q8WWN8 1544 aa9.41□□□□□ -0.9
SYNE2-220ENST00000555612 TSPYL6Q8N831 410 aa9.41□□□□□ -0.9
SYNE2-220ENST00000555612 CCDC113Q9H0I3 377 aa9.41□□□□□ -0.9
SYNE2-220ENST00000555612 ASXL1Q8IXJ9 1541 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms