RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 CYP46A1Q9Y6A2 500 aa14.5□□□□□ -0.09
SHMT2-207ENST00000553837 UBR2Q8IWV8 1755 aa14.5□□□□□ -0.09
SHMT2-207ENST00000553837 SHANK3Q9BYB0 1731 aa14.5□□□□□ -0.09
SHMT2-207ENST00000553837 SOS2Q07890 1332 aaPredicted RBP14.5□□□□□ -0.09
SHMT2-207ENST00000553837 PCDH11XQ9BZA7 1347 aa14.5□□□□□ -0.09
SHMT2-207ENST00000553837 PCDH11YQ9BZA8 1340 aa14.5□□□□□ -0.09
SHMT2-207ENST00000553837 H7C1W4 665 aa14.5□□□□□ -0.09
SHMT2-207ENST00000553837 ATP5JP18859 108 aa14.5□□□□□ -0.09
SHMT2-207ENST00000553837 SYCP1Q15431 976 aa14.5□□□□□ -0.09
SHMT2-207ENST00000553837 NECAB1Q8N987 351 aa14.5□□□□□ -0.09
SHMT2-207ENST00000553837 TMEM87AQ8NBN3 555 aa14.5□□□□□ -0.09
SHMT2-207ENST00000553837 TCEANC2Q96MN5 208 aa14.5□□□□□ -0.09
SHMT2-207ENST00000553837 NUP188Q5SRE5 1749 aa14.49□□□□□ -0.09
SHMT2-207ENST00000553837 JCADQ9P266 1359 aa14.49□□□□□ -0.09
SHMT2-207ENST00000553837 GOLGA6L6A8MZA4 724 aa14.49□□□□□ -0.09
SHMT2-207ENST00000553837 HIP1O00291 1037 aa14.49□□□□□ -0.09
SHMT2-207ENST00000553837 STX6O43752 255 aa14.49□□□□□ -0.09
SHMT2-207ENST00000553837 ZSCAN22P10073 491 aaPredicted RBP14.49□□□□□ -0.09
SHMT2-207ENST00000553837 GABPB1Q06547 395 aaPredicted RBP14.49□□□□□ -0.09
SHMT2-207ENST00000553837 TPCN1Q9ULQ1 816 aa14.49□□□□□ -0.09
SHMT2-207ENST00000553837 CNPY2Q9Y2B0 182 aa14.49□□□□□ -0.09
SHMT2-207ENST00000553837 TJP1Q07157 1748 aa14.49□□□□□ -0.09
SHMT2-207ENST00000553837 VGLL3A8MV65 326 aa14.49□□□□□ -0.09
SHMT2-207ENST00000553837 HCLS1P14317 486 aaPredicted RBP14.49□□□□□ -0.09
SHMT2-207ENST00000553837 ZFP91Q96JP5 570 aaPredicted RBP14.49□□□□□ -0.09
SHMT2-207ENST00000553837 SMC3Q9UQE7 1217 aa14.49□□□□□ -0.09
SHMT2-207ENST00000553837 TAF5LO75529 589 aa14.48□□□□□ -0.09
SHMT2-207ENST00000553837 GJB2P29033 226 aa14.48□□□□□ -0.09
SHMT2-207ENST00000553837 KCNJ4P48050 445 aa14.48□□□□□ -0.09
SHMT2-207ENST00000553837 NKX1-1Q15270 411 aaPredicted RBP14.48□□□□□ -0.09
SHMT2-207ENST00000553837 ATG9AQ7Z3C6 839 aa14.48□□□□□ -0.09
SHMT2-207ENST00000553837 SEC62Q99442 399 aaKnown RBP14.48□□□□□ -0.09
SHMT2-207ENST00000553837 SLAIN2Q9P270 581 aa14.48□□□□□ -0.09
SHMT2-207ENST00000553837 CCDC9Q9Y3X0 531 aaKnown RBP14.48□□□□□ -0.09
SHMT2-207ENST00000553837 ZSCAN21Q9Y5A6 473 aaPredicted RBP14.48□□□□□ -0.09
SHMT2-207ENST00000553837 PAPPAQ13219 1627 aa14.48□□□□□ -0.09
SHMT2-207ENST00000553837 ERVV-2B6SEH9 535 aa14.47□□□□□ -0.09
SHMT2-207ENST00000553837 ZKSCAN1P17029 563 aaPredicted RBP14.47□□□□□ -0.09
SHMT2-207ENST00000553837 CCDC129Q6ZRS4 1044 aa14.47□□□□□ -0.09
SHMT2-207ENST00000553837 PLCD3Q8N3E9 789 aa14.47□□□□□ -0.09
SHMT2-207ENST00000553837 DNAJC2Q99543 621 aaKnown RBP14.47□□□□□ -0.09
SHMT2-207ENST00000553837 ZBTB3Q9H5J0 574 aa14.47□□□□□ -0.09
SHMT2-207ENST00000553837 ZNF609O15014 1411 aa14.47□□□□□ -0.09
SHMT2-207ENST00000553837 SLFNL1Q499Z3 407 aa14.47□□□□□ -0.09
SHMT2-207ENST00000553837 STRN4Q9NRL3 753 aa14.47□□□□□ -0.09
SHMT2-207ENST00000553837 ZNF335Q9H4Z2 1342 aaPredicted RBP14.46□□□□□ -0.09
SHMT2-207ENST00000553837 ABCA3Q99758 1704 aa14.46□□□□□ -0.09
SHMT2-207ENST00000553837 F13A1P00488 732 aa14.46□□□□□ -0.09
SHMT2-207ENST00000553837 IL2RBP14784 551 aa14.46□□□□□ -0.09
SHMT2-207ENST00000553837 IRX3P78415 501 aaPredicted RBP14.46□□□□□ -0.09
SHMT2-207ENST00000553837 MTMR6Q9Y217 621 aa14.46□□□□□ -0.09
SHMT2-207ENST00000553837 CHMP3Q9Y3E7 222 aa14.46□□□□□ -0.09
SHMT2-207ENST00000553837 UBE2HP62256 183 aa14.46□□□□□ -0.1
SHMT2-207ENST00000553837 DDX46Q7L014 1031 aaKnown RBP14.46□□□□□ -0.1
SHMT2-207ENST00000553837 ZNF594Q96JF6 807 aaPredicted RBP14.46□□□□□ -0.1
SHMT2-207ENST00000553837 ZSCAN31Q96LW9 406 aaPredicted RBP14.46□□□□□ -0.1
SHMT2-207ENST00000553837 CARD10Q9BWT7 1032 aa14.46□□□□□ -0.1
SHMT2-207ENST00000553837 PYCARDQ9ULZ3 195 aa14.46□□□□□ -0.1
SHMT2-207ENST00000553837 TOGARAM1Q9Y4F4 1720 aa14.45□□□□□ -0.1
SHMT2-207ENST00000553837 IGSF3O75054 1194 aa14.45□□□□□ -0.1
SHMT2-207ENST00000553837 PLCB2Q00722 1185 aa14.45□□□□□ -0.1
SHMT2-207ENST00000553837 TOB2Q14106 344 aaPredicted RBP14.45□□□□□ -0.1
SHMT2-207ENST00000553837 TNS2Q63HR2 1409 aa14.45□□□□□ -0.1
SHMT2-207ENST00000553837 HAUS7Q99871 368 aa14.45□□□□□ -0.1
SHMT2-207ENST00000553837 KCNF1Q9H3M0 494 aa14.45□□□□□ -0.1
SHMT2-207ENST00000553837 SH2B1Q9NRF2 756 aaPredicted RBP14.45□□□□□ -0.1
SHMT2-207ENST00000553837 CWC25Q9NXE8 425 aaPredicted RBP14.45□□□□□ -0.1
SHMT2-207ENST00000553837 CGNQ9P2M7 1197 aaKnown RBP14.45□□□□□ -0.1
SHMT2-207ENST00000553837 RPS6KB1P23443 525 aa14.44□□□□□ -0.1
SHMT2-207ENST00000553837 TPRNQ4KMQ1 711 aa14.44□□□□□ -0.1
SHMT2-207ENST00000553837 LRRC24Q50LG9 513 aa14.44□□□□□ -0.1
SHMT2-207ENST00000553837 USPL1Q5W0Q7 1092 aa14.44□□□□□ -0.1
SHMT2-207ENST00000553837 TIMM10P62072 90 aa14.44□□□□□ -0.1
SHMT2-207ENST00000553837 CTNNA3Q9UI47 895 aa14.44□□□□□ -0.1
SHMT2-207ENST00000553837 NCBP1Q09161 790 aaKnown RBP14.43□□□□□ -0.1
SHMT2-207ENST00000553837 TSGA10IPQ3SY00 556 aa14.43□□□□□ -0.1
SHMT2-207ENST00000553837 BLOC1S2Q6QNY1 142 aa14.43□□□□□ -0.1
SHMT2-207ENST00000553837 PUS3Q9BZE2 481 aaKnown RBP14.43□□□□□ -0.1
SHMT2-207ENST00000553837 PSMA5P28066 241 aa14.43□□□□□ -0.1
SHMT2-207ENST00000553837 DNM1Q05193 864 aaKnown RBP14.43□□□□□ -0.1
SHMT2-207ENST00000553837 FUCA2Q9BTY2 467 aa14.43□□□□□ -0.1
SHMT2-207ENST00000553837 SMTNL1A8MU46 457 aa14.42□□□□□ -0.1
SHMT2-207ENST00000553837 FIBPO43427 364 aa14.42□□□□□ -0.1
SHMT2-207ENST00000553837 NEUROD6Q96NK8 337 aa14.42□□□□□ -0.1
SHMT2-207ENST00000553837 DDX41Q9UJV9 622 aaKnown RBP14.42□□□□□ -0.1
SHMT2-207ENST00000553837 ATP6V1DQ9Y5K8 247 aa14.42□□□□□ -0.1
SHMT2-207ENST00000553837 MORC2Q9Y6X9 1032 aaPredicted RBP14.42□□□□□ -0.1
SHMT2-207ENST00000553837 CCDC66A2RUB6 948 aa14.41□□□□□ -0.1
SHMT2-207ENST00000553837 RNF20Q5VTR2 975 aa14.41□□□□□ -0.1
SHMT2-207ENST00000553837 CCDC191Q8NCU4 936 aa14.41□□□□□ -0.1
SHMT2-207ENST00000553837 ALDH8A1Q9H2A2 487 aaPredicted RBP14.41□□□□□ -0.1
SHMT2-207ENST00000553837 PAXBP1Q9Y5B6 917 aa14.41□□□□□ -0.1
SHMT2-207ENST00000553837 LTBP4Q8N2S1 1624 aa14.41□□□□□ -0.1
SHMT2-207ENST00000553837 CYP21A2P08686 494 aa14.41□□□□□ -0.1
SHMT2-207ENST00000553837 SLFN14P0C7P3 912 aa14.41□□□□□ -0.1
SHMT2-207ENST00000553837 KBTBD3Q8NAB2 608 aa14.41□□□□□ -0.1
SHMT2-207ENST00000553837 CERKQ8TCT0 537 aa14.41□□□□□ -0.1
SHMT2-207ENST00000553837 ASAP1Q9ULH1 1129 aa14.41□□□□□ -0.1
SHMT2-207ENST00000553837 A0A0G2JLW4 131 aa14.4□□□□□ -0.1
SHMT2-207ENST00000553837 VPS37CA5D8V6 355 aaPredicted RBP14.4□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms