RNA–Protein interactions for RNA: ENST00000553576.5

VIPAS39-204, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-204ENST00000553576 SLC52A2Q9HAB3 445 aa7.46□□□□□ -1.22
VIPAS39-204ENST00000553576 NLRP2Q9NX02 1062 aa7.46□□□□□ -1.22
VIPAS39-204ENST00000553576 USP35Q9P2H5 1018 aa7.46□□□□□ -1.22
VIPAS39-204ENST00000553576 DAXXQ9UER7 740 aaPredicted RBP7.46□□□□□ -1.22
VIPAS39-204ENST00000553576 HDAC5Q9UQL6 1122 aa7.46□□□□□ -1.22
VIPAS39-204ENST00000553576 AK9Q5TCS8 1911 aa7.45□□□□□ -1.22
VIPAS39-204ENST00000553576 DDX11L8A8MPP1 907 aa7.45□□□□□ -1.22
VIPAS39-204ENST00000553576 ALDH1L1O75891 902 aa7.45□□□□□ -1.22
VIPAS39-204ENST00000553576 GCGRP47871 477 aa7.45□□□□□ -1.22
VIPAS39-204ENST00000553576 MMP16P51512 607 aa7.45□□□□□ -1.22
VIPAS39-204ENST00000553576 BECN1Q14457 450 aa7.45□□□□□ -1.22
VIPAS39-204ENST00000553576 BEND3Q5T5X7 828 aa7.45□□□□□ -1.22
VIPAS39-204ENST00000553576 ZNF790Q6PG37 636 aa7.45□□□□□ -1.22
VIPAS39-204ENST00000553576 KSR2Q6VAB6 950 aa7.45□□□□□ -1.22
VIPAS39-204ENST00000553576 SSH3Q8TE77 659 aa7.45□□□□□ -1.22
VIPAS39-204ENST00000553576 DNAAF4Q8WXU2 420 aa7.45□□□□□ -1.22
VIPAS39-204ENST00000553576 C22orf23Q9BZE7 217 aa7.45□□□□□ -1.22
VIPAS39-204ENST00000553576 SRCIN1Q9C0H9 1055 aa7.45□□□□□ -1.22
VIPAS39-204ENST00000553576 DDX21Q9NR30 783 aaKnown RBP eCLIP7.45□□□□□ -1.22
VIPAS39-204ENST00000553576 HYPKQ9NX55 129 aa7.45□□□□□ -1.22
VIPAS39-204ENST00000553576 MEGF6O75095 1541 aa7.45□□□□□ -1.22
VIPAS39-204ENST00000553576 C5P01031 1676 aa7.44□□□□□ -1.22
VIPAS39-204ENST00000553576 KDM6AO15550 1401 aaPredicted RBP7.44□□□□□ -1.22
VIPAS39-204ENST00000553576 SHANK3Q9BYB0 1731 aa7.44□□□□□ -1.22
VIPAS39-204ENST00000553576 UBR2Q8IWV8 1755 aa7.44□□□□□ -1.22
VIPAS39-204ENST00000553576 H3BM21 787 aa7.44□□□□□ -1.22
VIPAS39-204ENST00000553576 EIF2S2P20042 333 aaKnown RBP7.44□□□□□ -1.22
VIPAS39-204ENST00000553576 VEGFBP49765 207 aa7.44□□□□□ -1.22
VIPAS39-204ENST00000553576 TTC22Q5TAA0 569 aa7.44□□□□□ -1.22
VIPAS39-204ENST00000553576 KCNV2Q8TDN2 545 aa7.44□□□□□ -1.22
VIPAS39-204ENST00000553576 CABLES1Q8TDN4 633 aa7.44□□□□□ -1.22
VIPAS39-204ENST00000553576 CARD10Q9BWT7 1032 aa7.44□□□□□ -1.22
VIPAS39-204ENST00000553576 CHPF2Q9P2E5 772 aa7.44□□□□□ -1.22
VIPAS39-204ENST00000553576 UTYO14607 1347 aa7.44□□□□□ -1.22
VIPAS39-204ENST00000553576 WDR17Q8IZU2 1322 aa7.44□□□□□ -1.22
VIPAS39-204ENST00000553576 SALL3Q9BXA9 1300 aa7.44□□□□□ -1.22
VIPAS39-204ENST00000553576 ZNF335Q9H4Z2 1342 aaPredicted RBP7.44□□□□□ -1.22
VIPAS39-204ENST00000553576 ADCY9O60503 1353 aa7.44□□□□□ -1.22
VIPAS39-204ENST00000553576 LAMB4A4D0S4 1761 aa7.43□□□□□ -1.22
VIPAS39-204ENST00000553576 PI4KAP2A4QPH2 592 aa7.43□□□□□ -1.22
VIPAS39-204ENST00000553576 ERVV-2B6SEH9 535 aa7.43□□□□□ -1.22
VIPAS39-204ENST00000553576 CYP27B1O15528 508 aa7.43□□□□□ -1.22
VIPAS39-204ENST00000553576 RAB11FIP3O75154 756 aa7.43□□□□□ -1.22
VIPAS39-204ENST00000553576 UBTFL1P0CB47 393 aaPredicted RBP7.43□□□□□ -1.22
VIPAS39-204ENST00000553576 MTX1Q13505 466 aa7.43□□□□□ -1.22
VIPAS39-204ENST00000553576 VSIG10Q8N0Z9 540 aa7.43□□□□□ -1.22
VIPAS39-204ENST00000553576 PI4KAP1Q8N8J0 262 aa7.43□□□□□ -1.22
VIPAS39-204ENST00000553576 NFATC2IPQ8NCF5 419 aa7.43□□□□□ -1.22
VIPAS39-204ENST00000553576 SNX21Q969T3 373 aa7.43□□□□□ -1.22
VIPAS39-204ENST00000553576 STAP2Q9UGK3 403 aa7.43□□□□□ -1.22
VIPAS39-204ENST00000553576 ERBB4Q15303 1308 aa7.43□□□□□ -1.22
VIPAS39-204ENST00000553576 COL5A2P05997 1499 aaPredicted RBP7.43□□□□□ -1.22
VIPAS39-204ENST00000553576 PNMA6EA0A0J9YXQ4 647 aa7.42□□□□□ -1.22
VIPAS39-204ENST00000553576 CDC45O75419 566 aa7.42□□□□□ -1.22
VIPAS39-204ENST00000553576 DDX58O95786 925 aaKnown RBP7.42□□□□□ -1.22
VIPAS39-204ENST00000553576 CSB-PGBD3P0DP91 1061 aa7.42□□□□□ -1.22
VIPAS39-204ENST00000553576 BMP1P13497 986 aa7.42□□□□□ -1.22
VIPAS39-204ENST00000553576 GSPT1P15170 499 aaKnown RBP7.42□□□□□ -1.22
VIPAS39-204ENST00000553576 SKOR1P84550 965 aa7.42□□□□□ -1.22
VIPAS39-204ENST00000553576 HIC1Q14526 733 aa7.42□□□□□ -1.22
VIPAS39-204ENST00000553576 CHRNA2Q15822 529 aa7.42□□□□□ -1.22
VIPAS39-204ENST00000553576 RC3H1Q5TC82 1133 aaKnown RBP7.42□□□□□ -1.22
VIPAS39-204ENST00000553576 TBC1D9Q6ZT07 1266 aa7.42□□□□□ -1.22
VIPAS39-204ENST00000553576 C16orf71Q8IYS4 520 aaPredicted RBP7.42□□□□□ -1.22
VIPAS39-204ENST00000553576 LRRCC1Q9C099 1032 aa7.42□□□□□ -1.22
VIPAS39-204ENST00000553576 PRDM11Q9NQV5 511 aa7.42□□□□□ -1.22
VIPAS39-204ENST00000553576 LRRFIP2Q9Y608 721 aaKnown RBP7.42□□□□□ -1.22
VIPAS39-204ENST00000553576 AOX1Q06278 1338 aa7.42□□□□□ -1.22
VIPAS39-204ENST00000553576 PAPPAQ13219 1627 aa7.41□□□□□ -1.22
VIPAS39-204ENST00000553576 COL22A1Q8NFW1 1626 aaPredicted RBP7.41□□□□□ -1.22
VIPAS39-204ENST00000553576 AFDNP55196 1824 aaKnown RBP7.41□□□□□ -1.22
VIPAS39-204ENST00000553576 EPB41L2O43491 1005 aaKnown RBP7.41□□□□□ -1.22
VIPAS39-204ENST00000553576 SNRPA1P09661 255 aaKnown RBP7.41□□□□□ -1.22
VIPAS39-204ENST00000553576 PDE1AP54750 535 aa7.41□□□□□ -1.22
VIPAS39-204ENST00000553576 MFAP1P55081 439 aaKnown RBP7.41□□□□□ -1.22
VIPAS39-204ENST00000553576 HSP90AB4PQ58FF6 505 aa7.41□□□□□ -1.22
VIPAS39-204ENST00000553576 LARP1Q6PKG0 1096 aaKnown RBP7.41□□□□□ -1.22
VIPAS39-204ENST00000553576 LRP10Q7Z4F1 713 aa7.41□□□□□ -1.22
VIPAS39-204ENST00000553576 TRIM46Q7Z4K8 759 aa7.41□□□□□ -1.22
VIPAS39-204ENST00000553576 IL27Q8NEV9 243 aa7.41□□□□□ -1.22
VIPAS39-204ENST00000553576 LINS1Q8NG48 757 aa7.41□□□□□ -1.22
VIPAS39-204ENST00000553576 ZCRB1Q8TBF4 217 aaKnown RBP7.41□□□□□ -1.22
VIPAS39-204ENST00000553576 COL15A1P39059 1388 aa7.41□□□□□ -1.22
VIPAS39-204ENST00000553576 GLI3P10071 1580 aa7.41□□□□□ -1.22
VIPAS39-204ENST00000553576 COL14A1Q05707 1796 aaKnown RBP7.41□□□□□ -1.22
VIPAS39-204ENST00000553576 ITGB4P16144 1822 aa7.41□□□□□ -1.22
VIPAS39-204ENST00000553576 SMARCA5O60264 1052 aaPredicted RBP7.4□□□□□ -1.22
VIPAS39-204ENST00000553576 DXOO77932 396 aaKnown RBP7.4□□□□□ -1.22
VIPAS39-204ENST00000553576 ALDH1A1P00352 501 aa7.4□□□□□ -1.22
VIPAS39-204ENST00000553576 NBPF7P0C2Y1 421 aaPredicted RBP7.4□□□□□ -1.22
VIPAS39-204ENST00000553576 SDSP20132 328 aa7.4□□□□□ -1.22
VIPAS39-204ENST00000553576 WNT7BP56706 349 aa7.4□□□□□ -1.22
VIPAS39-204ENST00000553576 PROSER3Q2NL68 480 aa7.4□□□□□ -1.22
VIPAS39-204ENST00000553576 PPP1R42Q7Z4L9 355 aa7.4□□□□□ -1.22
VIPAS39-204ENST00000553576 SULF1Q8IWU6 871 aa7.4□□□□□ -1.22
VIPAS39-204ENST00000553576 NLRP7Q8WX94 980 aa7.4□□□□□ -1.22
VIPAS39-204ENST00000553576 ZNF496Q96IT1 587 aaPredicted RBP7.4□□□□□ -1.22
VIPAS39-204ENST00000553576 FMNL2Q96PY5 1086 aa7.4□□□□□ -1.22
VIPAS39-204ENST00000553576 KIF2CQ99661 725 aa7.4□□□□□ -1.22
VIPAS39-204ENST00000553576 USP26Q9BXU7 913 aa7.4□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms