RNA–Protein interactions for RNA: ENST00000553474.5

SHMT2-205, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2 BASIC

Gene SHMT2, Length 1,765 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-205ENST00000553474 CCDC83Q8IWF9 413 aa15.39■□□□□ 0.05
SHMT2-205ENST00000553474 KLHDC4Q8TBB5 520 aa15.39■□□□□ 0.05
SHMT2-205ENST00000553474 NSFL1CQ9UNZ2 370 aaKnown RBP15.39■□□□□ 0.05
SHMT2-205ENST00000553474 EP400Q96L91 3159 aa15.38■□□□□ 0.05
SHMT2-205ENST00000553474 BTAF1O14981 1849 aa15.38■□□□□ 0.05
SHMT2-205ENST00000553474 SH3TC1Q8TE82 1336 aa15.38■□□□□ 0.05
SHMT2-205ENST00000553474 CIAO1O76071 339 aa15.38■□□□□ 0.05
SHMT2-205ENST00000553474 MCM5P33992 734 aa15.38■□□□□ 0.05
SHMT2-205ENST00000553474 ME3Q16798 604 aa15.38■□□□□ 0.05
SHMT2-205ENST00000553474 UVSSAQ2YD98 709 aa15.38■□□□□ 0.05
SHMT2-205ENST00000553474 NBPF26B4DH59 902 aa15.37■□□□□ 0.05
SHMT2-205ENST00000553474 HMGB1P09429 215 aaKnown RBP15.37■□□□□ 0.05
SHMT2-205ENST00000553474 FOXO4P98177 505 aa15.37■□□□□ 0.05
SHMT2-205ENST00000553474 NBPF14Q5TI25 921 aa15.37■□□□□ 0.05
SHMT2-205ENST00000553474 NBPF10Q6P3W6 841 aaKnown RBP15.37■□□□□ 0.05
SHMT2-205ENST00000553474 LMBR1LQ6UX01 489 aa15.37■□□□□ 0.05
SHMT2-205ENST00000553474 NBPF15Q8N660 670 aa15.37■□□□□ 0.05
SHMT2-205ENST00000553474 TEX13AQ9BXU3 409 aaPredicted RBP15.37■□□□□ 0.05
SHMT2-205ENST00000553474 MTMR6Q9Y217 621 aa15.37■□□□□ 0.05
SHMT2-205ENST00000553474 LARGE1O95461 756 aa15.36■□□□□ 0.05
SHMT2-205ENST00000553474 MCMDC2Q4G0Z9 681 aa15.36■□□□□ 0.05
SHMT2-205ENST00000553474 KBTBD3Q8NAB2 608 aa15.36■□□□□ 0.05
SHMT2-205ENST00000553474 PPIL4Q8WUA2 492 aaKnown RBP eCLIP15.36■□□□□ 0.05
SHMT2-205ENST00000553474 ELP1O95163 1332 aa15.36■□□□□ 0.05
SHMT2-205ENST00000553474 ATP5J2-PTCD1G3V325 749 aa15.36■□□□□ 0.05
SHMT2-205ENST00000553474 PTCD1O75127 700 aaKnown RBP15.36■□□□□ 0.05
SHMT2-205ENST00000553474 CPA1P15085 419 aa15.36■□□□□ 0.05
SHMT2-205ENST00000553474 MSNP26038 577 aaKnown RBP15.36■□□□□ 0.05
SHMT2-205ENST00000553474 LRRFIP1Q32MZ4 808 aaKnown RBP15.36■□□□□ 0.05
SHMT2-205ENST00000553474 CHMP4CQ96CF2 233 aa15.36■□□□□ 0.05
SHMT2-205ENST00000553474 HELLSQ9NRZ9 838 aa15.36■□□□□ 0.05
SHMT2-205ENST00000553474 TPCN1Q9ULQ1 816 aa15.36■□□□□ 0.05
SHMT2-205ENST00000553474 TRIM28Q13263 835 aaKnown RBP15.35■□□□□ 0.05
SHMT2-205ENST00000553474 VSIG10Q8N0Z9 540 aa15.35■□□□□ 0.05
SHMT2-205ENST00000553474 CHAMP1Q96JM3 812 aa15.35■□□□□ 0.05
SHMT2-205ENST00000553474 TMOD3Q9NYL9 352 aa15.35■□□□□ 0.05
SHMT2-205ENST00000553474 KCNQ2O43526 872 aa15.34■□□□□ 0.05
SHMT2-205ENST00000553474 FAM196AQ6ZSG2 479 aa15.34■□□□□ 0.05
SHMT2-205ENST00000553474 ZNF589Q86UQ0 364 aaPredicted RBP15.34■□□□□ 0.05
SHMT2-205ENST00000553474 DBNDD2Q9BQY9 259 aa15.34■□□□□ 0.05
SHMT2-205ENST00000553474 NOL7Q9UMY1 257 aaKnown RBP15.34■□□□□ 0.05
SHMT2-205ENST00000553474 CNPY2Q9Y2B0 182 aa15.34■□□□□ 0.05
SHMT2-205ENST00000553474 GADD45BO75293 160 aaPredicted RBP15.34■□□□□ 0.05
SHMT2-205ENST00000553474 LARP1BQ659C4 914 aaKnown RBP15.34■□□□□ 0.05
SHMT2-205ENST00000553474 ATG9AQ7Z3C6 839 aa15.34■□□□□ 0.05
SHMT2-205ENST00000553474 NEK1Q96PY6 1258 aa15.34■□□□□ 0.05
SHMT2-205ENST00000553474 DSCC1Q9BVC3 393 aa15.34■□□□□ 0.05
SHMT2-205ENST00000553474 ZNF609O15014 1411 aa15.33■□□□□ 0.05
SHMT2-205ENST00000553474 TNS1Q9HBL0 1735 aaKnown RBP15.33■□□□□ 0.05
SHMT2-205ENST00000553474 EYA2O00167 538 aa15.33■□□□□ 0.04
SHMT2-205ENST00000553474 KRT85P78386 507 aa15.33■□□□□ 0.04
SHMT2-205ENST00000553474 ST3GAL1Q11201 340 aa15.33■□□□□ 0.04
SHMT2-205ENST00000553474 TOB2Q14106 344 aaPredicted RBP15.33■□□□□ 0.04
SHMT2-205ENST00000553474 CCDC39Q9UFE4 941 aa15.33■□□□□ 0.04
SHMT2-205ENST00000553474 ABCC12Q96J65 1359 aa15.33■□□□□ 0.04
SHMT2-205ENST00000553474 PIP4K2AP48426 406 aaPredicted RBP15.32■□□□□ 0.04
SHMT2-205ENST00000553474 SCAND2PQ9GZW5 306 aaPredicted RBP15.32■□□□□ 0.04
SHMT2-205ENST00000553474 GDPD2Q9HCC8 539 aa15.32■□□□□ 0.04
SHMT2-205ENST00000553474 BCL9O00512 1426 aa15.32■□□□□ 0.04
SHMT2-205ENST00000553474 TRIM37O94972 964 aa15.31■□□□□ 0.04
SHMT2-205ENST00000553474 TTLL7Q6ZT98 887 aa15.31■□□□□ 0.04
SHMT2-205ENST00000553474 PTF1AQ7RTS3 328 aa15.31■□□□□ 0.04
SHMT2-205ENST00000553474 DNAJC2Q99543 621 aaKnown RBP15.31■□□□□ 0.04
SHMT2-205ENST00000553474 LLPHQ9BRT6 129 aaKnown RBP15.31■□□□□ 0.04
SHMT2-205ENST00000553474 ISCA1Q9BUE6 129 aa15.31■□□□□ 0.04
SHMT2-205ENST00000553474 PLA2G12BQ9BX93 195 aa15.31■□□□□ 0.04
SHMT2-205ENST00000553474 PAG1Q9NWQ8 432 aa15.31■□□□□ 0.04
SHMT2-205ENST00000553474 TCIRG1Q13488 830 aa15.31■□□□□ 0.04
SHMT2-205ENST00000553474 PIGBQ92521 554 aa15.31■□□□□ 0.04
SHMT2-205ENST00000553474 GTF3C6Q969F1 213 aa15.31■□□□□ 0.04
SHMT2-205ENST00000553474 LARP6Q9BRS8 491 aaKnown RBP15.31■□□□□ 0.04
SHMT2-205ENST00000553474 AKAP2Q9Y2D5 859 aa15.31■□□□□ 0.04
SHMT2-205ENST00000553474 VPS37CA5D8V6 355 aaPredicted RBP15.3■□□□□ 0.04
SHMT2-205ENST00000553474 ZNF500O60304 480 aaPredicted RBP15.3■□□□□ 0.04
SHMT2-205ENST00000553474 CHMP3Q9Y3E7 222 aa15.3■□□□□ 0.04
SHMT2-205ENST00000553474 KIF3AQ9Y496 699 aa15.3■□□□□ 0.04
SHMT2-205ENST00000553474 LAMA4Q16363 1823 aa15.3■□□□□ 0.04
SHMT2-205ENST00000553474 FIBPO43427 364 aa15.29■□□□□ 0.04
SHMT2-205ENST00000553474 A1BGP04217 495 aa15.29■□□□□ 0.04
SHMT2-205ENST00000553474 DNM1Q05193 864 aaKnown RBP15.29■□□□□ 0.04
SHMT2-205ENST00000553474 ZMYM1Q5SVZ6 1142 aa15.29■□□□□ 0.04
SHMT2-205ENST00000553474 NECAB1Q8N987 351 aa15.29■□□□□ 0.04
SHMT2-205ENST00000553474 EDC3Q96F86 508 aaKnown RBP15.29■□□□□ 0.04
SHMT2-205ENST00000553474 ZFYP08048 801 aaPredicted RBP15.29■□□□□ 0.04
SHMT2-205ENST00000553474 CYP21A2P08686 494 aa15.29■□□□□ 0.04
SHMT2-205ENST00000553474 CCDC57Q2TAC2 916 aa15.29■□□□□ 0.04
SHMT2-205ENST00000553474 FOXD4L6Q3SYB3 417 aaPredicted RBP15.29■□□□□ 0.04
SHMT2-205ENST00000553474 FOXD4L3Q6VB84 417 aaPredicted RBP15.29■□□□□ 0.04
SHMT2-205ENST00000553474 FBXL16Q8N461 479 aa15.29■□□□□ 0.04
SHMT2-205ENST00000553474 JARID2Q92833 1246 aaPredicted RBP15.29■□□□□ 0.04
SHMT2-205ENST00000553474 ZSCAN16Q9H4T2 348 aaPredicted RBP15.29■□□□□ 0.04
SHMT2-205ENST00000553474 CEP126Q9P2H0 1117 aa15.29■□□□□ 0.04
SHMT2-205ENST00000553474 ZKSCAN5Q9Y2L8 839 aa15.29■□□□□ 0.04
SHMT2-205ENST00000553474 PCCAP05165 728 aaPredicted RBP15.28■□□□□ 0.04
SHMT2-205ENST00000553474 TERF1P54274 439 aa15.28■□□□□ 0.04
SHMT2-205ENST00000553474 KIF6Q6ZMV9 814 aa15.28■□□□□ 0.04
SHMT2-205ENST00000553474 DDX46Q7L014 1031 aaKnown RBP15.28■□□□□ 0.04
SHMT2-205ENST00000553474 DHX32Q7L7V1 743 aaKnown RBP15.28■□□□□ 0.04
SHMT2-205ENST00000553474 NEUROD6Q96NK8 337 aa15.28■□□□□ 0.04
SHMT2-205ENST00000553474 AGXT2Q9BYV1 514 aa15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms