RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 TMX3Q96JJ7 454 aa31.69■■■□□ 2.66
CCDC88C-205ENST00000553403 TM6SF1Q9BZW5 370 aa31.69■■■□□ 2.66
CCDC88C-205ENST00000553403 NIP7Q9Y221 180 aaKnown RBP eCLIP31.69■■■□□ 2.66
CCDC88C-205ENST00000553403 RBM8AQ9Y5S9 174 aaKnown RBP31.69■■■□□ 2.66
CCDC88C-205ENST00000553403 ABCC12Q96J65 1359 aa31.68■■■□□ 2.66
CCDC88C-205ENST00000553403 MCM4P33991 863 aa31.68■■■□□ 2.66
CCDC88C-205ENST00000553403 XAGE2Q96GT9 111 aa31.68■■■□□ 2.66
CCDC88C-205ENST00000553403 CNNM1Q9NRU3 951 aa31.68■■■□□ 2.66
CCDC88C-205ENST00000553403 NTSR2O95665 410 aa31.67■■■□□ 2.66
CCDC88C-205ENST00000553403 CUL4AQ13619 759 aa31.67■■■□□ 2.66
CCDC88C-205ENST00000553403 FAM182BQ5T319 152 aa31.67■■■□□ 2.66
CCDC88C-205ENST00000553403 UPF3BQ9BZI7 483 aaKnown RBP31.67■■■□□ 2.66
CCDC88C-205ENST00000553403 PRPF40BQ6NWY9 871 aaKnown RBP31.67■■■□□ 2.66
CCDC88C-205ENST00000553403 DDX46Q7L014 1031 aaKnown RBP31.67■■■□□ 2.66
CCDC88C-205ENST00000553403 NDUFB9Q9Y6M9 179 aa31.67■■■□□ 2.66
CCDC88C-205ENST00000553403 LAMB2P55268 1798 aa31.66■■■□□ 2.66
CCDC88C-205ENST00000553403 PTF1AQ7RTS3 328 aa31.66■■■□□ 2.66
CCDC88C-205ENST00000553403 RTL9Q8NET4 1388 aa31.66■■■□□ 2.66
CCDC88C-205ENST00000553403 GOLIM4O00461 696 aa31.65■■■□□ 2.66
CCDC88C-205ENST00000553403 ZKSCAN1P17029 563 aaPredicted RBP31.65■■■□□ 2.66
CCDC88C-205ENST00000553403 ATP2B3Q16720 1220 aa31.65■■■□□ 2.66
CCDC88C-205ENST00000553403 TTC39AQ5SRH9 613 aa31.65■■■□□ 2.66
CCDC88C-205ENST00000553403 GORABQ5T7V8 394 aa31.65■■■□□ 2.66
CCDC88C-205ENST00000553403 TTC14Q96N46 770 aa31.65■■■□□ 2.66
CCDC88C-205ENST00000553403 TAF5LO75529 589 aa31.64■■■□□ 2.66
CCDC88C-205ENST00000553403 KCNJ4P48050 445 aa31.64■■■□□ 2.66
CCDC88C-205ENST00000553403 NUCB2P80303 420 aa31.64■■■□□ 2.66
CCDC88C-205ENST00000553403 MCMDC2Q4G0Z9 681 aa31.64■■■□□ 2.66
CCDC88C-205ENST00000553403 CREB3L3Q68CJ9 461 aa31.64■■■□□ 2.66
CCDC88C-205ENST00000553403 VGLL2Q8N8G2 317 aa31.64■■■□□ 2.66
CCDC88C-205ENST00000553403 TNPO1Q92973 898 aaKnown RBP31.64■■■□□ 2.66
CCDC88C-205ENST00000553403 HCLS1P14317 486 aaPredicted RBP31.64■■■□□ 2.65
CCDC88C-205ENST00000553403 ADORA1P30542 326 aa31.64■■■□□ 2.65
CCDC88C-205ENST00000553403 RNF20Q5VTR2 975 aa31.64■■■□□ 2.65
CCDC88C-205ENST00000553403 ZNF589Q86UQ0 364 aaPredicted RBP31.64■■■□□ 2.65
CCDC88C-205ENST00000553403 INTS4Q96HW7 963 aaKnown RBP31.64■■■□□ 2.65
CCDC88C-205ENST00000553403 DDX60Q8IY21 1712 aaKnown RBP31.63■■■□□ 2.65
CCDC88C-205ENST00000553403 DEFB132Q7Z7B7 95 aa31.63■■■□□ 2.65
CCDC88C-205ENST00000553403 HELLSQ9NRZ9 838 aa31.63■■■□□ 2.65
CCDC88C-205ENST00000553403 MROH5Q6ZUA9 1318 aa31.62■■■□□ 2.65
CCDC88C-205ENST00000553403 RPS6KA4O75676 772 aa31.62■■■□□ 2.65
CCDC88C-205ENST00000553403 BAG6P46379 1132 aa31.62■■■□□ 2.65
CCDC88C-205ENST00000553403 CCDC152Q4G0S7 254 aa31.62■■■□□ 2.65
CCDC88C-205ENST00000553403 SLC27A2O14975 620 aa31.61■■■□□ 2.65
CCDC88C-205ENST00000553403 USPL1Q5W0Q7 1092 aa31.61■■■□□ 2.65
CCDC88C-205ENST00000553403 ZSWIM6Q9HCJ5 1215 aa31.61■■■□□ 2.65
CCDC88C-205ENST00000553403 HMG20BQ9P0W2 317 aa31.61■■■□□ 2.65
CCDC88C-205ENST00000553403 PDE8BO95263 885 aa31.6■■■□□ 2.65
CCDC88C-205ENST00000553403 LRRFIP1Q32MZ4 808 aaKnown RBP31.6■■■□□ 2.65
CCDC88C-205ENST00000553403 ZNF512BQ96KM6 892 aaPredicted RBP31.6■■■□□ 2.65
CCDC88C-205ENST00000553403 GBP4Q96PP9 640 aa31.6■■■□□ 2.65
CCDC88C-205ENST00000553403 SCN7AQ01118 1682 aa31.6■■■□□ 2.65
CCDC88C-205ENST00000553403 FAM177BA6PVY3 158 aa31.6■■■□□ 2.65
CCDC88C-205ENST00000553403 FAM196AQ6ZSG2 479 aa31.6■■■□□ 2.65
CCDC88C-205ENST00000553403 SSFA2P28290 1259 aa31.59■■■□□ 2.65
CCDC88C-205ENST00000553403 TSGA10IPQ3SY00 556 aa31.59■■■□□ 2.65
CCDC88C-205ENST00000553403 ZMYM1Q5SVZ6 1142 aa31.59■■■□□ 2.65
CCDC88C-205ENST00000553403 ZGPATQ8N5A5 531 aaKnown RBP31.59■■■□□ 2.65
CCDC88C-205ENST00000553403 JAKMIP1Q96N16 626 aaKnown RBP31.59■■■□□ 2.65
CCDC88C-205ENST00000553403 CCNL1Q9UK58 526 aaPredicted RBP31.59■■■□□ 2.65
CCDC88C-205ENST00000553403 DDX11L8A8MPP1 907 aa31.58■■■□□ 2.65
CCDC88C-205ENST00000553403 CASTP20810 708 aaKnown RBP31.58■■■□□ 2.65
CCDC88C-205ENST00000553403 PSMA5P28066 241 aa31.58■■■□□ 2.65
CCDC88C-205ENST00000553403 CLEC17AQ6ZS10 378 aa31.58■■■□□ 2.65
CCDC88C-205ENST00000553403 LY75O60449 1722 aa31.58■■■□□ 2.65
CCDC88C-205ENST00000553403 SBF2Q86WG5 1849 aa31.58■■■□□ 2.65
CCDC88C-205ENST00000553403 KCNQ4P56696 695 aa31.57■■■□□ 2.65
CCDC88C-205ENST00000553403 VPS53Q5VIR6 699 aa31.57■■■□□ 2.65
CCDC88C-205ENST00000553403 CYP46A1Q9Y6A2 500 aa31.57■■■□□ 2.65
CCDC88C-205ENST00000553403 U3KPZ7 1027 aaPredicted RBP31.57■■■□□ 2.65
CCDC88C-205ENST00000553403 RNF113AO15541 343 aaKnown RBP31.57■■■□□ 2.64
CCDC88C-205ENST00000553403 CYP2E1P05181 493 aaPredicted RBP31.57■■■□□ 2.64
CCDC88C-205ENST00000553403 DEKP35659 375 aaKnown RBP31.57■■■□□ 2.64
CCDC88C-205ENST00000553403 NARFQ9UHQ1 456 aa31.57■■■□□ 2.64
CCDC88C-205ENST00000553403 RPAP1Q9BWH6 1393 aaPredicted RBP31.56■■■□□ 2.64
CCDC88C-205ENST00000553403 ADCK5Q3MIX3 580 aa31.56■■■□□ 2.64
CCDC88C-205ENST00000553403 PUM3Q15397 648 aaKnown RBP31.55■■■□□ 2.64
CCDC88C-205ENST00000553403 RUFY3Q7L099 469 aa31.55■■■□□ 2.64
CCDC88C-205ENST00000553403 ZFYP08048 801 aaPredicted RBP31.54■■■□□ 2.64
CCDC88C-205ENST00000553403 FGFR2P21802 821 aa31.54■■■□□ 2.64
CCDC88C-205ENST00000553403 AK2P54819 239 aa31.54■■■□□ 2.64
CCDC88C-205ENST00000553403 LPIN2Q92539 896 aa31.54■■■□□ 2.64
CCDC88C-205ENST00000553403 SEC62Q99442 399 aaKnown RBP31.54■■■□□ 2.64
CCDC88C-205ENST00000553403 MPHOSPH8Q99549 860 aa31.54■■■□□ 2.64
CCDC88C-205ENST00000553403 PDRG1Q9NUG6 133 aa31.54■■■□□ 2.64
CCDC88C-205ENST00000553403 LIMCH1Q9UPQ0 1083 aa31.54■■■□□ 2.64
CCDC88C-205ENST00000553403 FKBP4Q02790 459 aaKnown RBP eCLIP31.54■■■□□ 2.64
CCDC88C-205ENST00000553403 BCL2L12Q9HB09 334 aa31.54■■■□□ 2.64
CCDC88C-205ENST00000553403 PTMSP20962 102 aa31.53■■■□□ 2.64
CCDC88C-205ENST00000553403 NOL8Q76FK4 1167 aaKnown RBP31.53■■■□□ 2.64
CCDC88C-205ENST00000553403 ARAP2Q8WZ64 1704 aa31.52■■■□□ 2.64
CCDC88C-205ENST00000553403 CHGBP05060 677 aa31.52■■■□□ 2.64
CCDC88C-205ENST00000553403 IGHMBP2P38935 993 aaKnown RBP31.52■■■□□ 2.64
CCDC88C-205ENST00000553403 KRT32Q14532 448 aa31.52■■■□□ 2.64
CCDC88C-205ENST00000553403 CCDC129Q6ZRS4 1044 aa31.52■■■□□ 2.64
CCDC88C-205ENST00000553403 DSCC1Q9BVC3 393 aa31.52■■■□□ 2.64
CCDC88C-205ENST00000553403 SEC31BQ9NQW1 1179 aa31.52■■■□□ 2.64
CCDC88C-205ENST00000553403 GNPATO15228 680 aa31.51■■■□□ 2.64
CCDC88C-205ENST00000553403 TRIM37O94972 964 aa31.51■■■□□ 2.64
CCDC88C-205ENST00000553403 SCARF1Q14162 830 aa31.51■■■□□ 2.64
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms