RNA–Protein interactions for RNA: ENST00000551486.1

LIMA1-207, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 587 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-207ENST00000551486 LCE4AQ5TA78 99 aa4.04□□□□□ -1.76
LIMA1-207ENST00000551486 TP53INP2Q8IXH6 220 aa4.04□□□□□ -1.76
LIMA1-207ENST00000551486 FAM46AQ96IP4 442 aaKnown RBP4.04□□□□□ -1.76
LIMA1-207ENST00000551486 HINFPQ9BQA5 517 aa4.04□□□□□ -1.76
LIMA1-207ENST00000551486 PIM2Q9P1W9 311 aa4.04□□□□□ -1.76
LIMA1-207ENST00000551486 KIAA1024Q9UPX6 916 aa4.04□□□□□ -1.76
LIMA1-207ENST00000551486 LEMD3Q9Y2U8 911 aa4.04□□□□□ -1.76
LIMA1-207ENST00000551486 USP17L3A6NCW0 530 aa4.03□□□□□ -1.76
LIMA1-207ENST00000551486 USP17L4A6NCW7 530 aa4.03□□□□□ -1.76
LIMA1-207ENST00000551486 XYLBO75191 536 aa4.03□□□□□ -1.76
LIMA1-207ENST00000551486 MICAL2O94851 1124 aa4.03□□□□□ -1.76
LIMA1-207ENST00000551486 USP17L2Q6R6M4 530 aa4.03□□□□□ -1.76
LIMA1-207ENST00000551486 BEND4Q6ZU67 534 aa4.03□□□□□ -1.76
LIMA1-207ENST00000551486 USP17L1Q7RTZ2 530 aa4.03□□□□□ -1.76
LIMA1-207ENST00000551486 FAM20CQ8IXL6 584 aa4.03□□□□□ -1.76
LIMA1-207ENST00000551486 SIX5Q8N196 739 aa4.03□□□□□ -1.76
LIMA1-207ENST00000551486 VTI1AQ96AJ9 217 aa4.03□□□□□ -1.76
LIMA1-207ENST00000551486 ZNF594Q96JF6 807 aaPredicted RBP4.03□□□□□ -1.76
LIMA1-207ENST00000551486 UTP3Q9NQZ2 479 aaKnown RBP eCLIP4.03□□□□□ -1.76
LIMA1-207ENST00000551486 MKRN1Q9UHC7 482 aaKnown RBP4.03□□□□□ -1.76
LIMA1-207ENST00000551486 HIF3AQ9Y2N7 669 aa4.03□□□□□ -1.76
LIMA1-207ENST00000551486 LINC01387J3KSC0 135 aa4.02□□□□□ -1.77
LIMA1-207ENST00000551486 EGFRP00533 1210 aa4.02□□□□□ -1.77
LIMA1-207ENST00000551486 BMP3P12645 472 aa4.02□□□□□ -1.77
LIMA1-207ENST00000551486 RASA1P20936 1047 aa4.02□□□□□ -1.77
LIMA1-207ENST00000551486 SOX18P35713 384 aa4.02□□□□□ -1.77
LIMA1-207ENST00000551486 SEC13P55735 322 aa4.02□□□□□ -1.77
LIMA1-207ENST00000551486 CPSF6Q16630 551 aaKnown RBP eCLIP4.02□□□□□ -1.77
LIMA1-207ENST00000551486 ANKRD34AQ69YU3 496 aa4.02□□□□□ -1.77
LIMA1-207ENST00000551486 VSIG10LQ86VR7 867 aa4.02□□□□□ -1.77
LIMA1-207ENST00000551486 KLHL23Q8NBE8 558 aa4.02□□□□□ -1.77
LIMA1-207ENST00000551486 SPACA7Q96KW9 195 aa4.02□□□□□ -1.77
LIMA1-207ENST00000551486 NSUN5Q96P11 429 aaKnown RBP4.02□□□□□ -1.77
LIMA1-207ENST00000551486 OSBPL1AQ9BXW6 950 aa4.02□□□□□ -1.77
LIMA1-207ENST00000551486 KLK14Q9P0G3 267 aa4.02□□□□□ -1.77
LIMA1-207ENST00000551486 TRIM33Q9UPN9 1127 aa4.02□□□□□ -1.77
LIMA1-207ENST00000551486 BCS1LQ9Y276 419 aa4.02□□□□□ -1.77
LIMA1-207ENST00000551486 GAS2O43903 313 aaKnown RBP4.01□□□□□ -1.77
LIMA1-207ENST00000551486 SMNDC1O75940 238 aaKnown RBP eCLIP4.01□□□□□ -1.77
LIMA1-207ENST00000551486 CDC27P30260 824 aa4.01□□□□□ -1.77
LIMA1-207ENST00000551486 DGKZQ13574 1117 aa4.01□□□□□ -1.77
LIMA1-207ENST00000551486 PKN1Q16512 942 aa4.01□□□□□ -1.77
LIMA1-207ENST00000551486 C11orf91Q3C1V1 193 aa4.01□□□□□ -1.77
LIMA1-207ENST00000551486 FBLN7Q53RD9 439 aa4.01□□□□□ -1.77
LIMA1-207ENST00000551486 CMTR1Q8N1G2 835 aaKnown RBP4.01□□□□□ -1.77
LIMA1-207ENST00000551486 AGBL5Q8NDL9 886 aa4.01□□□□□ -1.77
LIMA1-207ENST00000551486 CCDC39Q9UFE4 941 aa4.01□□□□□ -1.77
LIMA1-207ENST00000551486 RTCBQ9Y3I0 505 aaKnown RBP4.01□□□□□ -1.77
LIMA1-207ENST00000551486 DBX1A6NMT0 343 aa4□□□□□ -1.77
LIMA1-207ENST00000551486 BIN1O00499 593 aa4□□□□□ -1.77
LIMA1-207ENST00000551486 ATP9BO43861 1147 aa4□□□□□ -1.77
LIMA1-207ENST00000551486 MMP20O60882 483 aa4□□□□□ -1.77
LIMA1-207ENST00000551486 WISP1O95388 367 aa4□□□□□ -1.77
LIMA1-207ENST00000551486 IGFBP4P22692 258 aa4□□□□□ -1.77
LIMA1-207ENST00000551486 GRNP28799 593 aaKnown RBP4□□□□□ -1.77
LIMA1-207ENST00000551486 FDX2Q6P4F2 183 aa4□□□□□ -1.77
LIMA1-207ENST00000551486 PPP1R3FQ6ZSY5 799 aaPredicted RBP4□□□□□ -1.77
LIMA1-207ENST00000551486 GALNT11Q8NCW6 608 aa4□□□□□ -1.77
LIMA1-207ENST00000551486 MFSD14AQ96MC6 490 aa4□□□□□ -1.77
LIMA1-207ENST00000551486 METTL22Q9BUU2 404 aaPredicted RBP4□□□□□ -1.77
LIMA1-207ENST00000551486 FSCN2O14926 492 aa3.99□□□□□ -1.77
LIMA1-207ENST00000551486 HOXD8P13378 290 aaPredicted RBP3.99□□□□□ -1.77
LIMA1-207ENST00000551486 FOSL1P15407 271 aa3.99□□□□□ -1.77
LIMA1-207ENST00000551486 ITGB5P18084 799 aa3.99□□□□□ -1.77
LIMA1-207ENST00000551486 RXRBP28702 533 aa3.99□□□□□ -1.77
LIMA1-207ENST00000551486 HOXA10P31260 410 aaPredicted RBP3.99□□□□□ -1.77
LIMA1-207ENST00000551486 CEP135Q66GS9 1140 aa3.99□□□□□ -1.77
LIMA1-207ENST00000551486 LARP1Q6PKG0 1096 aaKnown RBP3.99□□□□□ -1.77
LIMA1-207ENST00000551486 KIAA1211Q6ZU35 1233 aa3.99□□□□□ -1.77
LIMA1-207ENST00000551486 CBLL1Q75N03 491 aa3.99□□□□□ -1.77
LIMA1-207ENST00000551486 RGL4Q8IZJ4 473 aa3.99□□□□□ -1.77
LIMA1-207ENST00000551486 FBXL6Q8N531 539 aa3.99□□□□□ -1.77
LIMA1-207ENST00000551486 LACRTQ9GZZ8 138 aa3.99□□□□□ -1.77
LIMA1-207ENST00000551486 RNF208Q9H0X6 261 aa3.99□□□□□ -1.77
LIMA1-207ENST00000551486 SEC31BQ9NQW1 1179 aa3.99□□□□□ -1.77
LIMA1-207ENST00000551486 RAD21O60216 631 aa3.98□□□□□ -1.77
LIMA1-207ENST00000551486 PRNPP04156 253 aa3.98□□□□□ -1.77
LIMA1-207ENST00000551486 CDC25BP30305 580 aa3.98□□□□□ -1.77
LIMA1-207ENST00000551486 CABP4P57796 275 aa3.98□□□□□ -1.77
LIMA1-207ENST00000551486 HYAL2Q12891 473 aa3.98□□□□□ -1.77
LIMA1-207ENST00000551486 TXNDC11Q6PKC3 985 aa3.98□□□□□ -1.77
LIMA1-207ENST00000551486 NLRP13Q86W25 1043 aa3.98□□□□□ -1.77
LIMA1-207ENST00000551486 CARD10Q9BWT7 1032 aa3.98□□□□□ -1.77
LIMA1-207ENST00000551486 BSDC1Q9NW68 430 aaPredicted RBP3.98□□□□□ -1.77
LIMA1-207ENST00000551486 KCNK4Q9NYG8 393 aa3.98□□□□□ -1.77
LIMA1-207ENST00000551486 OPLAHO14841 1288 aa3.97□□□□□ -1.77
LIMA1-207ENST00000551486 CYP26A1O43174 497 aa3.97□□□□□ -1.77
LIMA1-207ENST00000551486 FARP2O94887 1054 aaPredicted RBP3.97□□□□□ -1.77
LIMA1-207ENST00000551486 PTPRAP18433 802 aa3.97□□□□□ -1.77
LIMA1-207ENST00000551486 MAP4P27816 1152 aaKnown RBP3.97□□□□□ -1.77
LIMA1-207ENST00000551486 LCE5AQ5TCM9 118 aa3.97□□□□□ -1.77
LIMA1-207ENST00000551486 FLCNQ8NFG4 579 aa3.97□□□□□ -1.77
LIMA1-207ENST00000551486 CCER1Q8TC90 406 aaPredicted RBP3.97□□□□□ -1.77
LIMA1-207ENST00000551486 SLC38A3Q99624 504 aa3.97□□□□□ -1.77
LIMA1-207ENST00000551486 RUSC1Q9BVN2 902 aa3.97□□□□□ -1.77
LIMA1-207ENST00000551486 COG6Q9Y2V7 657 aa3.97□□□□□ -1.77
LIMA1-207ENST00000551486 FOXO3O43524 673 aa3.96□□□□□ -1.78
LIMA1-207ENST00000551486 SCNN1AP37088 669 aa3.96□□□□□ -1.78
LIMA1-207ENST00000551486 PREPP48147 710 aa3.96□□□□□ -1.78
LIMA1-207ENST00000551486 ARL4DP49703 201 aa3.96□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms