RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 DCAF11Q8TEB1 546 aa6.4□□□□□ -1.38
LIMA1-206ENST00000550611 SRA1Q9HD15 236 aaKnown RBP6.4□□□□□ -1.38
LIMA1-206ENST00000550611 PALM3A6NDB9 673 aaPredicted RBP6.39□□□□□ -1.39
LIMA1-206ENST00000550611 RTN1Q16799 776 aa6.39□□□□□ -1.39
LIMA1-206ENST00000550611 DHX32Q7L7V1 743 aaKnown RBP6.39□□□□□ -1.39
LIMA1-206ENST00000550611 BCANQ96GW7 911 aa6.39□□□□□ -1.39
LIMA1-206ENST00000550611 ZFATQ9P243 1243 aa6.39□□□□□ -1.39
LIMA1-206ENST00000550611 RAXQ9Y2V3 346 aa6.39□□□□□ -1.39
LIMA1-206ENST00000550611 ADAMTS12P58397 1594 aa6.39□□□□□ -1.39
LIMA1-206ENST00000550611 ALX3O95076 343 aa6.38□□□□□ -1.39
LIMA1-206ENST00000550611 IGLV1-40P01703 118 aa6.38□□□□□ -1.39
LIMA1-206ENST00000550611 GRNP28799 593 aaKnown RBP6.38□□□□□ -1.39
LIMA1-206ENST00000550611 INPP5BP32019 993 aa6.38□□□□□ -1.39
LIMA1-206ENST00000550611 MAP4K3Q8IVH8 894 aa6.38□□□□□ -1.39
LIMA1-206ENST00000550611 SIX5Q8N196 739 aa6.38□□□□□ -1.39
LIMA1-206ENST00000550611 TSEN2Q8NCE0 465 aaKnown RBP6.38□□□□□ -1.39
LIMA1-206ENST00000550611 BCS1LQ9Y276 419 aa6.38□□□□□ -1.39
LIMA1-206ENST00000550611 ATAD2Q6PL18 1390 aa6.38□□□□□ -1.39
LIMA1-206ENST00000550611 ERICH3Q5RHP9 1530 aa6.37□□□□□ -1.39
LIMA1-206ENST00000550611 ARID4AP29374 1257 aaPredicted RBP6.37□□□□□ -1.39
LIMA1-206ENST00000550611 INTS5Q6P9B9 1019 aaKnown RBP6.37□□□□□ -1.39
LIMA1-206ENST00000550611 SMG9Q9H0W8 520 aaKnown RBP6.37□□□□□ -1.39
LIMA1-206ENST00000550611 TOP2BQ02880 1626 aa6.36□□□□□ -1.39
LIMA1-206ENST00000550611 PTPRMP28827 1452 aa6.36□□□□□ -1.39
LIMA1-206ENST00000550611 USP17L3A6NCW0 530 aa6.36□□□□□ -1.39
LIMA1-206ENST00000550611 USP17L4A6NCW7 530 aa6.36□□□□□ -1.39
LIMA1-206ENST00000550611 TGFB1P01137 390 aa6.36□□□□□ -1.39
LIMA1-206ENST00000550611 SPINK2P20155 84 aa6.36□□□□□ -1.39
LIMA1-206ENST00000550611 NRLP54845 237 aa6.36□□□□□ -1.39
LIMA1-206ENST00000550611 USP17L2Q6R6M4 530 aa6.36□□□□□ -1.39
LIMA1-206ENST00000550611 USP17L1Q7RTZ2 530 aa6.36□□□□□ -1.39
LIMA1-206ENST00000550611 OGFOD1Q8N543 542 aa6.36□□□□□ -1.39
LIMA1-206ENST00000550611 ASXL2Q76L83 1435 aa6.35□□□□□ -1.39
LIMA1-206ENST00000550611 DKK1O94907 266 aa6.35□□□□□ -1.39
LIMA1-206ENST00000550611 MCM6Q14566 821 aa6.35□□□□□ -1.39
LIMA1-206ENST00000550611 ZDHHC13Q8IUH4 622 aa6.35□□□□□ -1.39
LIMA1-206ENST00000550611 IFT43Q96FT9 208 aa6.35□□□□□ -1.39
LIMA1-206ENST00000550611 NGLY1Q96IV0 654 aa6.35□□□□□ -1.39
LIMA1-206ENST00000550611 STOML1Q9UBI4 398 aa6.35□□□□□ -1.39
LIMA1-206ENST00000550611 RARAP10276 462 aa6.34□□□□□ -1.39
LIMA1-206ENST00000550611 TARSP26639 723 aaKnown RBP6.34□□□□□ -1.39
LIMA1-206ENST00000550611 GRIK1P39086 918 aa6.34□□□□□ -1.39
LIMA1-206ENST00000550611 MLLT1Q03111 559 aaPredicted RBP6.34□□□□□ -1.39
LIMA1-206ENST00000550611 SCG3Q8WXD2 468 aaKnown RBP6.34□□□□□ -1.39
LIMA1-206ENST00000550611 KRTAP4-9Q9BYQ8 210 aa6.34□□□□□ -1.39
LIMA1-206ENST00000550611 COG6Q9Y2V7 657 aa6.34□□□□□ -1.39
LIMA1-206ENST00000550611 RBM19Q9Y4C8 960 aaKnown RBP6.34□□□□□ -1.39
LIMA1-206ENST00000550611 DHX15O43143 795 aaKnown RBP6.33□□□□□ -1.4
LIMA1-206ENST00000550611 ADAMTS4O75173 837 aa6.33□□□□□ -1.4
LIMA1-206ENST00000550611 GLB1P16278 677 aa6.33□□□□□ -1.4
LIMA1-206ENST00000550611 EIF2AK2P19525 551 aaKnown RBP6.33□□□□□ -1.4
LIMA1-206ENST00000550611 IDH3AP50213 366 aa6.33□□□□□ -1.4
LIMA1-206ENST00000550611 SETDB1Q15047 1291 aa6.33□□□□□ -1.4
LIMA1-206ENST00000550611 KRT25Q7Z3Z0 450 aa6.33□□□□□ -1.4
LIMA1-206ENST00000550611 DTX1Q86Y01 620 aa6.33□□□□□ -1.4
LIMA1-206ENST00000550611 TLR7Q9NYK1 1049 aaKnown RBP6.33□□□□□ -1.4
LIMA1-206ENST00000550611 BIVM-ERCC5R4GMW8 1640 aa6.32□□□□□ -1.4
LIMA1-206ENST00000550611 PCF11O94913 1555 aaKnown RBP6.32□□□□□ -1.4
LIMA1-206ENST00000550611 KIAA0586Q9BVV6 1533 aa6.32□□□□□ -1.4
LIMA1-206ENST00000550611 SUPT5HO00267 1087 aaKnown RBP6.32□□□□□ -1.4
LIMA1-206ENST00000550611 SASH3O75995 380 aa6.32□□□□□ -1.4
LIMA1-206ENST00000550611 ARSDP51689 593 aa6.32□□□□□ -1.4
LIMA1-206ENST00000550611 NFIAQ12857 509 aa6.32□□□□□ -1.4
LIMA1-206ENST00000550611 ZC3HAV1Q7Z2W4 902 aaKnown RBP6.32□□□□□ -1.4
LIMA1-206ENST00000550611 WWC1Q8IX03 1113 aa6.32□□□□□ -1.4
LIMA1-206ENST00000550611 IL22RA1Q8N6P7 574 aa6.32□□□□□ -1.4
LIMA1-206ENST00000550611 PLD4Q96BZ4 506 aa6.32□□□□□ -1.4
LIMA1-206ENST00000550611 UBL7Q96S82 380 aaPredicted RBP6.32□□□□□ -1.4
LIMA1-206ENST00000550611 MKRN1Q9UHC7 482 aaKnown RBP6.32□□□□□ -1.4
LIMA1-206ENST00000550611 KIF21BO75037 1637 aa6.32□□□□□ -1.4
LIMA1-206ENST00000550611 ATP9BO43861 1147 aa6.31□□□□□ -1.4
LIMA1-206ENST00000550611 HOXD8P13378 290 aaPredicted RBP6.31□□□□□ -1.4
LIMA1-206ENST00000550611 CACTIN-AS1Q8N1I8 211 aa6.31□□□□□ -1.4
LIMA1-206ENST00000550611 AGGF1Q8N302 714 aaeCLIP6.31□□□□□ -1.4
LIMA1-206ENST00000550611 ZNF594Q96JF6 807 aaPredicted RBP6.31□□□□□ -1.4
LIMA1-206ENST00000550611 MUC3BQ9H195 1237 aa6.31□□□□□ -1.4
LIMA1-206ENST00000550611 PTPRGP23470 1445 aa6.31□□□□□ -1.4
LIMA1-206ENST00000550611 GLI2P10070 1586 aa6.31□□□□□ -1.4
LIMA1-206ENST00000550611 ARID4BQ4LE39 1312 aaPredicted RBP6.3□□□□□ -1.4
LIMA1-206ENST00000550611 WNT11O96014 354 aa6.3□□□□□ -1.4
LIMA1-206ENST00000550611 EGFRP00533 1210 aa6.3□□□□□ -1.4
LIMA1-206ENST00000550611 UVSSAQ2YD98 709 aa6.3□□□□□ -1.4
LIMA1-206ENST00000550611 RNF43Q68DV7 783 aa6.3□□□□□ -1.4
LIMA1-206ENST00000550611 HFE2Q6ZVN8 426 aa6.3□□□□□ -1.4
LIMA1-206ENST00000550611 CEP41Q9BYV8 373 aa6.3□□□□□ -1.4
LIMA1-206ENST00000550611 ADGRE2Q9UHX3 823 aa6.3□□□□□ -1.4
LIMA1-206ENST00000550611 RUSC2Q8N2Y8 1516 aa6.3□□□□□ -1.4
LIMA1-206ENST00000550611 PLB1Q6P1J6 1458 aa6.29□□□□□ -1.4
LIMA1-206ENST00000550611 LOC102724428A0A0B4J2F2 783 aa6.29□□□□□ -1.4
LIMA1-206ENST00000550611 PRR19A6NJB7 356 aa6.29□□□□□ -1.4
LIMA1-206ENST00000550611 SEC13P55735 322 aa6.29□□□□□ -1.4
LIMA1-206ENST00000550611 SIK1P57059 783 aa6.29□□□□□ -1.4
LIMA1-206ENST00000550611 GDF6Q6KF10 455 aaPredicted RBP6.29□□□□□ -1.4
LIMA1-206ENST00000550611 ARMC10Q8N2F6 343 aa6.29□□□□□ -1.4
LIMA1-206ENST00000550611 UCN2Q96RP3 112 aa6.29□□□□□ -1.4
LIMA1-206ENST00000550611 DBNDD2Q9BQY9 259 aa6.29□□□□□ -1.4
LIMA1-206ENST00000550611 EPRSP07814 1512 aaKnown RBP6.29□□□□□ -1.4
LIMA1-206ENST00000550611 MICAL2O94851 1124 aa6.28□□□□□ -1.4
LIMA1-206ENST00000550611 RAPGEF3O95398 923 aa6.28□□□□□ -1.4
LIMA1-206ENST00000550611 IGFBP4P22692 258 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms