RNA–Protein interactions for RNA: ENST00000550220.1

VTI1BP3-201, Transcript of vesicle transport through interaction with t-SNAREs 1B pseudogene 3, humanhuman

BASIC

Gene VTI1BP3, Length 636 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1BP3-201ENST00000550220 FAM9BQ8IZU0 186 aa13.88□□□□□ -0.19
VTI1BP3-201ENST00000550220 LINS1Q8NG48 757 aa13.88□□□□□ -0.19
VTI1BP3-201ENST00000550220 TTLL11Q8NHH1 800 aa13.88□□□□□ -0.19
VTI1BP3-201ENST00000550220 DNAAF4Q8WXU2 420 aa13.88□□□□□ -0.19
VTI1BP3-201ENST00000550220 PLA2G12BQ9BX93 195 aa13.88□□□□□ -0.19
VTI1BP3-201ENST00000550220 DBNDD1Q9H9R9 158 aa13.88□□□□□ -0.19
VTI1BP3-201ENST00000550220 BSDC1Q9NW68 430 aaPredicted RBP13.88□□□□□ -0.19
VTI1BP3-201ENST00000550220 SALL2Q9Y467 1007 aaPredicted RBP13.88□□□□□ -0.19
VTI1BP3-201ENST00000550220 RTL9Q8NET4 1388 aa13.87□□□□□ -0.19
VTI1BP3-201ENST00000550220 PSMD14O00487 310 aa13.87□□□□□ -0.19
VTI1BP3-201ENST00000550220 VEGFBP49765 207 aa13.87□□□□□ -0.19
VTI1BP3-201ENST00000550220 GCKRQ14397 625 aa13.87□□□□□ -0.19
VTI1BP3-201ENST00000550220 CWF19L2Q2TBE0 894 aaKnown RBP13.87□□□□□ -0.19
VTI1BP3-201ENST00000550220 G2E3Q7L622 706 aa13.87□□□□□ -0.19
VTI1BP3-201ENST00000550220 MICALL2Q8IY33 904 aa13.87□□□□□ -0.19
VTI1BP3-201ENST00000550220 JARID2Q92833 1246 aaPredicted RBP13.87□□□□□ -0.19
VTI1BP3-201ENST00000550220 AIDAQ96BJ3 306 aa13.87□□□□□ -0.19
VTI1BP3-201ENST00000550220 VIL1P09327 827 aaKnown RBP13.86□□□□□ -0.19
VTI1BP3-201ENST00000550220 IGHMBP2P38935 993 aaKnown RBP13.86□□□□□ -0.19
VTI1BP3-201ENST00000550220 MAP2K1Q02750 393 aaPredicted RBP13.86□□□□□ -0.19
VTI1BP3-201ENST00000550220 EXOSC9Q06265 439 aaKnown RBP13.86□□□□□ -0.19
VTI1BP3-201ENST00000550220 DOK7Q18PE1 504 aa13.86□□□□□ -0.19
VTI1BP3-201ENST00000550220 PODNQ7Z5L7 613 aa13.86□□□□□ -0.19
VTI1BP3-201ENST00000550220 CCDC85AQ96PX6 553 aaPredicted RBP13.86□□□□□ -0.19
VTI1BP3-201ENST00000550220 ADAMTSL1Q8N6G6 1762 aa13.86□□□□□ -0.19
VTI1BP3-201ENST00000550220 UBE3BQ7Z3V4 1068 aa13.85□□□□□ -0.19
VTI1BP3-201ENST00000550220 AGBL3Q8NEM8 1001 aa13.85□□□□□ -0.19
VTI1BP3-201ENST00000550220 GREM2Q9H772 168 aa13.85□□□□□ -0.19
VTI1BP3-201ENST00000550220 MINPP1Q9UNW1 487 aa13.85□□□□□ -0.19
VTI1BP3-201ENST00000550220 WDR33Q9C0J8 1336 aaKnown RBP13.85□□□□□ -0.19
VTI1BP3-201ENST00000550220 LAMB2P55268 1798 aa13.84□□□□□ -0.19
VTI1BP3-201ENST00000550220 CSF1RP07333 972 aa13.84□□□□□ -0.19
VTI1BP3-201ENST00000550220 MMP14P50281 582 aa13.84□□□□□ -0.19
VTI1BP3-201ENST00000550220 HIRAP54198 1017 aaPredicted RBP13.84□□□□□ -0.19
VTI1BP3-201ENST00000550220 COL13A1Q5TAT6 717 aaPredicted RBP13.84□□□□□ -0.19
VTI1BP3-201ENST00000550220 CST9Q5W186 159 aa13.84□□□□□ -0.19
VTI1BP3-201ENST00000550220 DCPSQ96C86 337 aaKnown RBP13.84□□□□□ -0.19
VTI1BP3-201ENST00000550220 HHIPL1Q96JK4 782 aa13.84□□□□□ -0.19
VTI1BP3-201ENST00000550220 MPHOSPH8Q99549 860 aa13.84□□□□□ -0.19
VTI1BP3-201ENST00000550220 ANKRD2Q9GZV1 360 aa13.84□□□□□ -0.19
VTI1BP3-201ENST00000550220 LEMD3Q9Y2U8 911 aa13.84□□□□□ -0.19
VTI1BP3-201ENST00000550220 ZBTB12Q9Y330 459 aaPredicted RBP13.84□□□□□ -0.19
VTI1BP3-201ENST00000550220 TLL2Q9Y6L7 1015 aa13.84□□□□□ -0.19
VTI1BP3-201ENST00000550220 DDX60Q8IY21 1712 aaKnown RBP13.84□□□□□ -0.19
VTI1BP3-201ENST00000550220 TRAF5O00463 557 aa13.83□□□□□ -0.2
VTI1BP3-201ENST00000550220 CELF2O95319 508 aaKnown RBP13.83□□□□□ -0.2
VTI1BP3-201ENST00000550220 CTCFP49711 727 aaPredicted RBP13.83□□□□□ -0.2
VTI1BP3-201ENST00000550220 TRPM4Q8TD43 1214 aa13.83□□□□□ -0.2
VTI1BP3-201ENST00000550220 GLIS2Q9BZE0 524 aaPredicted RBP13.83□□□□□ -0.2
VTI1BP3-201ENST00000550220 PRDM10Q9NQV6 1147 aa13.83□□□□□ -0.2
VTI1BP3-201ENST00000550220 WBP1LQ9NX94 342 aa13.83□□□□□ -0.2
VTI1BP3-201ENST00000550220 DUOX1Q9NRD9 1551 aa13.83□□□□□ -0.2
VTI1BP3-201ENST00000550220 LRRC37AA6NMS7 1700 aa13.82□□□□□ -0.2
VTI1BP3-201ENST00000550220 USP17L3A6NCW0 530 aa13.82□□□□□ -0.2
VTI1BP3-201ENST00000550220 USP17L4A6NCW7 530 aa13.82□□□□□ -0.2
VTI1BP3-201ENST00000550220 ITGA6P23229 1130 aa13.82□□□□□ -0.2
VTI1BP3-201ENST00000550220 CCT4P50991 539 aaKnown RBP13.82□□□□□ -0.2
VTI1BP3-201ENST00000550220 RSBN1LQ6PCB5 846 aaPredicted RBP13.82□□□□□ -0.2
VTI1BP3-201ENST00000550220 PAXIP1Q6ZW49 1069 aaPredicted RBP13.82□□□□□ -0.2
VTI1BP3-201ENST00000550220 USP17L1Q7RTZ2 530 aa13.82□□□□□ -0.2
VTI1BP3-201ENST00000550220 SAMD7Q7Z3H4 446 aa13.82□□□□□ -0.2
VTI1BP3-201ENST00000550220 SAPCD2Q86UD0 394 aa13.82□□□□□ -0.2
VTI1BP3-201ENST00000550220 TNS4Q8IZW8 715 aa13.82□□□□□ -0.2
VTI1BP3-201ENST00000550220 BEGAINQ9BUH8 593 aa13.82□□□□□ -0.2
VTI1BP3-201ENST00000550220 COA1Q9GZY4 146 aa13.82□□□□□ -0.2
VTI1BP3-201ENST00000550220 LTBP1Q14766 1721 aa13.81□□□□□ -0.2
VTI1BP3-201ENST00000550220 ANKRD18BA2A2Z9 1011 aa13.81□□□□□ -0.2
VTI1BP3-201ENST00000550220 MAP2K2P36507 400 aa13.81□□□□□ -0.2
VTI1BP3-201ENST00000550220 CASP7P55210 303 aa13.81□□□□□ -0.2
VTI1BP3-201ENST00000550220 TBC1D10BQ4KMP7 808 aaPredicted RBP13.81□□□□□ -0.2
VTI1BP3-201ENST00000550220 BEND3Q5T5X7 828 aa13.81□□□□□ -0.2
VTI1BP3-201ENST00000550220 CAPNS2Q96L46 248 aa13.81□□□□□ -0.2
VTI1BP3-201ENST00000550220 GPR101Q96P66 508 aaPredicted RBP13.81□□□□□ -0.2
VTI1BP3-201ENST00000550220 SPINK5Q9NQ38 1064 aaPredicted RBP13.81□□□□□ -0.2
VTI1BP3-201ENST00000550220 KCNQ5Q9NR82 932 aa13.81□□□□□ -0.2
VTI1BP3-201ENST00000550220 MED23Q9ULK4 1368 aa13.81□□□□□ -0.2
VTI1BP3-201ENST00000550220 ALDH1L1O75891 902 aa13.8□□□□□ -0.2
VTI1BP3-201ENST00000550220 USP17L8P0C7I0 530 aa13.8□□□□□ -0.2
VTI1BP3-201ENST00000550220 ZNF280AP59817 542 aaPredicted RBP13.8□□□□□ -0.2
VTI1BP3-201ENST00000550220 IFIT5Q13325 482 aaKnown RBP13.8□□□□□ -0.2
VTI1BP3-201ENST00000550220 KIF4BQ2VIQ3 1234 aa13.8□□□□□ -0.2
VTI1BP3-201ENST00000550220 RBM26Q5T8P6 1007 aaKnown RBP13.8□□□□□ -0.2
VTI1BP3-201ENST00000550220 KRT26Q7Z3Y9 468 aa13.8□□□□□ -0.2
VTI1BP3-201ENST00000550220 USP48Q86UV5 1035 aa13.8□□□□□ -0.2
VTI1BP3-201ENST00000550220 SULF1Q8IWU6 871 aa13.8□□□□□ -0.2
VTI1BP3-201ENST00000550220 MYO3BQ8WXR4 1341 aa13.8□□□□□ -0.2
VTI1BP3-201ENST00000550220 ZNF609O15014 1411 aa13.8□□□□□ -0.2
VTI1BP3-201ENST00000550220 SHTN1A0MZ66 631 aa13.79□□□□□ -0.2
VTI1BP3-201ENST00000550220 E9PSI1 815 aa13.79□□□□□ -0.2
VTI1BP3-201ENST00000550220 FOXN1O15353 648 aa13.79□□□□□ -0.2
VTI1BP3-201ENST00000550220 FMR1Q06787 632 aaKnown RBP eCLIP13.79□□□□□ -0.2
VTI1BP3-201ENST00000550220 FAM161AQ3B820 660 aa13.79□□□□□ -0.2
VTI1BP3-201ENST00000550220 STRIP1Q5VSL9 837 aa13.79□□□□□ -0.2
VTI1BP3-201ENST00000550220 OGFOD1Q8N543 542 aa13.79□□□□□ -0.2
VTI1BP3-201ENST00000550220 C9orf78Q9NZ63 289 aaPredicted RBP13.79□□□□□ -0.2
VTI1BP3-201ENST00000550220 ZNF804BA4D1E1 1349 aa13.79□□□□□ -0.2
VTI1BP3-201ENST00000550220 PCNTO95613 3336 aa13.79□□□□□ -0.2
VTI1BP3-201ENST00000550220 F6X3S4 739 aa13.78□□□□□ -0.2
VTI1BP3-201ENST00000550220 GRM8O00222 908 aa13.78□□□□□ -0.2
VTI1BP3-201ENST00000550220 CA12O43570 354 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms