RNA–Protein interactions for RNA: ENST00000549139.5

CHMP1A-206, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 812 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-206ENST00000549139 MYH16Q9H6N6 1097 aa20.22■□□□□ 0.83
CHMP1A-206ENST00000549139 SPINK5Q9NQ38 1064 aaPredicted RBP20.22■□□□□ 0.83
CHMP1A-206ENST00000549139 HYPKQ9NX55 129 aa20.22■□□□□ 0.83
CHMP1A-206ENST00000549139 ZBTB12Q9Y330 459 aaPredicted RBP20.22■□□□□ 0.83
CHMP1A-206ENST00000549139 TWISTNBQ3B726 338 aaPredicted RBP20.21■□□□□ 0.83
CHMP1A-206ENST00000549139 RGMBQ6NW40 437 aa20.21■□□□□ 0.83
CHMP1A-206ENST00000549139 SAMD7Q7Z3H4 446 aa20.21■□□□□ 0.83
CHMP1A-206ENST00000549139 XAGE3Q8WTP9 111 aa20.21■□□□□ 0.83
CHMP1A-206ENST00000549139 SAGE1Q9NXZ1 904 aa20.21■□□□□ 0.83
CHMP1A-206ENST00000549139 EGFRP00533 1210 aa20.2■□□□□ 0.82
CHMP1A-206ENST00000549139 AIMP1Q12904 312 aaKnown RBP20.2■□□□□ 0.82
CHMP1A-206ENST00000549139 DDX46Q7L014 1031 aaKnown RBP20.2■□□□□ 0.82
CHMP1A-206ENST00000549139 PSMD14O00487 310 aa20.19■□□□□ 0.82
CHMP1A-206ENST00000549139 TMC4Q7Z404 712 aa20.19■□□□□ 0.82
CHMP1A-206ENST00000549139 GBA2Q9HCG7 927 aaPredicted RBP20.19■□□□□ 0.82
CHMP1A-206ENST00000549139 KIF23Q02241 960 aaPredicted RBP20.18■□□□□ 0.82
CHMP1A-206ENST00000549139 EXOSC9Q06265 439 aaKnown RBP20.18■□□□□ 0.82
CHMP1A-206ENST00000549139 HSP90AB3PQ58FF7 597 aa20.18■□□□□ 0.82
CHMP1A-206ENST00000549139 KRT26Q7Z3Y9 468 aa20.18■□□□□ 0.82
CHMP1A-206ENST00000549139 SH3TC1Q8TE82 1336 aa20.18■□□□□ 0.82
CHMP1A-206ENST00000549139 AKAP11Q9UKA4 1901 aa20.17■□□□□ 0.82
CHMP1A-206ENST00000549139 VAMP4O75379 141 aa20.17■□□□□ 0.82
CHMP1A-206ENST00000549139 TCIRG1Q13488 830 aa20.17■□□□□ 0.82
CHMP1A-206ENST00000549139 TBC1D10BQ4KMP7 808 aaPredicted RBP20.17■□□□□ 0.82
CHMP1A-206ENST00000549139 ANKRD13DQ6ZTN6 518 aa20.17■□□□□ 0.82
CHMP1A-206ENST00000549139 CCDC102AQ96A19 550 aa20.17■□□□□ 0.82
CHMP1A-206ENST00000549139 RNF186Q9NXI6 227 aa20.17■□□□□ 0.82
CHMP1A-206ENST00000549139 TRMT112Q9UI30 125 aaKnown RBP20.17■□□□□ 0.82
CHMP1A-206ENST00000549139 ADM5C9JUS6 153 aa20.16■□□□□ 0.82
CHMP1A-206ENST00000549139 PLBD2Q8NHP8 589 aa20.16■□□□□ 0.82
CHMP1A-206ENST00000549139 DBNDD1Q9H9R9 158 aa20.16■□□□□ 0.82
CHMP1A-206ENST00000549139 DDX60Q8IY21 1712 aaKnown RBP20.16■□□□□ 0.82
CHMP1A-206ENST00000549139 E9PSI1 815 aa20.15■□□□□ 0.82
CHMP1A-206ENST00000549139 SOX10P56693 466 aa20.15■□□□□ 0.82
CHMP1A-206ENST00000549139 WASHC4Q2M389 1173 aa20.15■□□□□ 0.82
CHMP1A-206ENST00000549139 C2orf69Q8N8R5 385 aa20.15■□□□□ 0.82
CHMP1A-206ENST00000549139 STK31Q9BXU1 1019 aa20.15■□□□□ 0.82
CHMP1A-206ENST00000549139 PHAXQ9H814 394 aaKnown RBP20.15■□□□□ 0.82
CHMP1A-206ENST00000549139 KCNQ5Q9NR82 932 aa20.15■□□□□ 0.82
CHMP1A-206ENST00000549139 POLLQ9UGP5 575 aa20.15■□□□□ 0.82
CHMP1A-206ENST00000549139 RTL9Q8NET4 1388 aa20.15■□□□□ 0.82
CHMP1A-206ENST00000549139 COL4A1P02462 1669 aa20.15■□□□□ 0.82
CHMP1A-206ENST00000549139 TRPA1O75762 1119 aa20.14■□□□□ 0.81
CHMP1A-206ENST00000549139 SLC10A3P09131 477 aa20.14■□□□□ 0.81
CHMP1A-206ENST00000549139 RPS12P25398 132 aaKnown RBP20.14■□□□□ 0.81
CHMP1A-206ENST00000549139 ZNF157P51786 506 aaPredicted RBP20.14■□□□□ 0.81
CHMP1A-206ENST00000549139 SLFN5Q08AF3 891 aa20.14■□□□□ 0.81
CHMP1A-206ENST00000549139 CSRNP1Q96S65 589 aa20.14■□□□□ 0.81
CHMP1A-206ENST00000549139 SCN9AQ15858 1988 aa20.14■□□□□ 0.81
CHMP1A-206ENST00000549139 CELF1Q92879 486 aaKnown RBP20.13■□□□□ 0.81
CHMP1A-206ENST00000549139 NSFL1CQ9UNZ2 370 aaKnown RBP20.13■□□□□ 0.81
CHMP1A-206ENST00000549139 RIMBP2O15034 1052 aa20.12■□□□□ 0.81
CHMP1A-206ENST00000549139 SF3B3Q15393 1217 aaKnown RBP20.12■□□□□ 0.81
CHMP1A-206ENST00000549139 DCPSQ96C86 337 aaKnown RBP20.12■□□□□ 0.81
CHMP1A-206ENST00000549139 ECE2O60344 883 aa20.11■□□□□ 0.81
CHMP1A-206ENST00000549139 SLC4A2P04920 1241 aa20.11■□□□□ 0.81
CHMP1A-206ENST00000549139 GPSM2P81274 684 aa20.11■□□□□ 0.81
CHMP1A-206ENST00000549139 RBM26Q5T8P6 1007 aaKnown RBP20.11■□□□□ 0.81
CHMP1A-206ENST00000549139 ASTN2O75129 1339 aaPredicted RBP20.1■□□□□ 0.81
CHMP1A-206ENST00000549139 DDX58O95786 925 aaKnown RBP20.1■□□□□ 0.81
CHMP1A-206ENST00000549139 RIC3Q7Z5B4 369 aa20.1■□□□□ 0.81
CHMP1A-206ENST00000549139 CTU1Q7Z7A3 348 aaKnown RBP20.1■□□□□ 0.81
CHMP1A-206ENST00000549139 TRMT2AQ8IZ69 625 aaKnown RBP20.1■□□□□ 0.81
CHMP1A-206ENST00000549139 ZNF428Q96B54 188 aa20.1■□□□□ 0.81
CHMP1A-206ENST00000549139 CDCA7LQ96GN5 454 aa20.1■□□□□ 0.81
CHMP1A-206ENST00000549139 C6orf229H3BNL8 230 aa20.09■□□□□ 0.81
CHMP1A-206ENST00000549139 VIL1P09327 827 aaKnown RBP20.09■□□□□ 0.81
CHMP1A-206ENST00000549139 DOK7Q18PE1 504 aa20.09■□□□□ 0.81
CHMP1A-206ENST00000549139 KIF4BQ2VIQ3 1234 aa20.09■□□□□ 0.81
CHMP1A-206ENST00000549139 ISCA1Q9BUE6 129 aa20.09■□□□□ 0.81
CHMP1A-206ENST00000549139 GGA3Q9NZ52 723 aa20.09■□□□□ 0.81
CHMP1A-206ENST00000549139 PRPF38BQ5VTL8 546 aaKnown RBP20.08■□□□□ 0.81
CHMP1A-206ENST00000549139 TBC1D16Q8TBP0 767 aa20.08■□□□□ 0.81
CHMP1A-206ENST00000549139 CDCA5Q96FF9 252 aa20.08■□□□□ 0.81
CHMP1A-206ENST00000549139 TRIM28Q13263 835 aaKnown RBP20.07■□□□□ 0.8
CHMP1A-206ENST00000549139 KSR2Q6VAB6 950 aa20.07■□□□□ 0.8
CHMP1A-206ENST00000549139 G2E3Q7L622 706 aa20.07■□□□□ 0.8
CHMP1A-206ENST00000549139 RASAL3Q86YV0 1011 aa20.07■□□□□ 0.8
CHMP1A-206ENST00000549139 SULF1Q8IWU6 871 aa20.07■□□□□ 0.8
CHMP1A-206ENST00000549139 FAM89AQ96GI7 184 aa20.07■□□□□ 0.8
CHMP1A-206ENST00000549139 EYA3Q99504 573 aa20.07■□□□□ 0.8
CHMP1A-206ENST00000549139 ZNF609O15014 1411 aa20.06■□□□□ 0.8
CHMP1A-206ENST00000549139 ZNF280AP59817 542 aaPredicted RBP20.06■□□□□ 0.8
CHMP1A-206ENST00000549139 REM2Q8IYK8 340 aaPredicted RBP20.06■□□□□ 0.8
CHMP1A-206ENST00000549139 HNRNPUQ00839 825 aaKnown RBP eCLIP20.05■□□□□ 0.8
CHMP1A-206ENST00000549139 METTL22Q9BUU2 404 aaPredicted RBP20.05■□□□□ 0.8
CHMP1A-206ENST00000549139 PODXL2Q9NZ53 605 aa20.05■□□□□ 0.8
CHMP1A-206ENST00000549139 HPS5Q9UPZ3 1129 aa20.05■□□□□ 0.8
CHMP1A-206ENST00000549139 PI4KAP2A4QPH2 592 aa20.04■□□□□ 0.8
CHMP1A-206ENST00000549139 ATP5J2-PTCD1G3V325 749 aa20.04■□□□□ 0.8
CHMP1A-206ENST00000549139 RPS8P62241 208 aaKnown RBP20.04■□□□□ 0.8
CHMP1A-206ENST00000549139 FLIIQ13045 1269 aa20.04■□□□□ 0.8
CHMP1A-206ENST00000549139 PI4KAP1Q8N8J0 262 aa20.04■□□□□ 0.8
CHMP1A-206ENST00000549139 MAP3K2Q9Y2U5 619 aa20.04■□□□□ 0.8
CHMP1A-206ENST00000549139 PAPPA2Q9BXP8 1791 aa20.03■□□□□ 0.8
CHMP1A-206ENST00000549139 FKBP1BP68106 108 aa20.03■□□□□ 0.8
CHMP1A-206ENST00000549139 SCARF1Q14162 830 aa20.03■□□□□ 0.8
CHMP1A-206ENST00000549139 ANGEL2Q5VTE6 544 aaKnown RBP20.03■□□□□ 0.8
CHMP1A-206ENST00000549139 MYD88Q99836 296 aa20.03■□□□□ 0.8
CHMP1A-206ENST00000549139 PSME4Q14997 1843 aa20.03■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms