RNA–Protein interactions for RNA: ENST00000548420.1

PTCH1-217, Transcript of patched 1, humanhuman

TSL 5

Gene PTCH1, Length 553 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-217ENST00000548420 NLRP3Q96P20 1036 aa18.62■□□□□ 0.57
PTCH1-217ENST00000548420 EFCC1Q9HA90 598 aa18.62■□□□□ 0.57
PTCH1-217ENST00000548420 LAMB2P55268 1798 aa18.62■□□□□ 0.57
PTCH1-217ENST00000548420 IGF2BP3O00425 579 aaKnown RBP eCLIP18.61■□□□□ 0.57
PTCH1-217ENST00000548420 RIMBP2O15034 1052 aa18.61■□□□□ 0.57
PTCH1-217ENST00000548420 SLC4A8Q2Y0W8 1093 aa18.61■□□□□ 0.57
PTCH1-217ENST00000548420 SPRYD7Q5W111 196 aa18.61■□□□□ 0.57
PTCH1-217ENST00000548420 COL3A1P02461 1466 aaPredicted RBP18.6■□□□□ 0.57
PTCH1-217ENST00000548420 MAP3K15Q6ZN16 1313 aa18.6■□□□□ 0.57
PTCH1-217ENST00000548420 DIAPH1O60610 1272 aaKnown RBP18.6■□□□□ 0.57
PTCH1-217ENST00000548420 ALDH1A1P00352 501 aa18.6■□□□□ 0.57
PTCH1-217ENST00000548420 VIL1P09327 827 aaKnown RBP18.6■□□□□ 0.57
PTCH1-217ENST00000548420 ZNF280AP59817 542 aaPredicted RBP18.6■□□□□ 0.57
PTCH1-217ENST00000548420 DOK7Q18PE1 504 aa18.6■□□□□ 0.57
PTCH1-217ENST00000548420 SLC10A5Q5PT55 438 aa18.6■□□□□ 0.57
PTCH1-217ENST00000548420 SPTBN5Q9NRC6 3674 aaKnown RBP18.6■□□□□ 0.57
PTCH1-217ENST00000548420 ECE2O60344 883 aa18.59■□□□□ 0.57
PTCH1-217ENST00000548420 CNGB1Q14028 1251 aaPredicted RBP18.59■□□□□ 0.57
PTCH1-217ENST00000548420 WASHC4Q2M389 1173 aa18.59■□□□□ 0.57
PTCH1-217ENST00000548420 Q7L0L9 218 aa18.59■□□□□ 0.57
PTCH1-217ENST00000548420 SHISA4Q96DD7 197 aa18.59■□□□□ 0.57
PTCH1-217ENST00000548420 PRDM6Q9NQX0 595 aa18.59■□□□□ 0.57
PTCH1-217ENST00000548420 PTCH2Q9Y6C5 1203 aa18.59■□□□□ 0.57
PTCH1-217ENST00000548420 PPP2R1AP30153 589 aa18.58■□□□□ 0.56
PTCH1-217ENST00000548420 TTLL12Q14166 644 aaPredicted RBP18.58■□□□□ 0.56
PTCH1-217ENST00000548420 STXBP5LQ9Y2K9 1186 aa18.58■□□□□ 0.56
PTCH1-217ENST00000548420 LRRC37AA6NMS7 1700 aa18.57■□□□□ 0.56
PTCH1-217ENST00000548420 ZBTB3Q9H5J0 574 aa18.57■□□□□ 0.56
PTCH1-217ENST00000548420 POLLQ9UGP5 575 aa18.57■□□□□ 0.56
PTCH1-217ENST00000548420 ANKRD36CQ5JPF3 1778 aa18.57■□□□□ 0.56
PTCH1-217ENST00000548420 CRHR2Q13324 411 aa18.56■□□□□ 0.56
PTCH1-217ENST00000548420 SLC9C1Q4G0N8 1177 aa18.56■□□□□ 0.56
PTCH1-217ENST00000548420 ERBB4Q15303 1308 aa18.55■□□□□ 0.56
PTCH1-217ENST00000548420 A0A1W2PPC1 479 aa18.55■□□□□ 0.56
PTCH1-217ENST00000548420 ZBTB7BO15156 539 aaPredicted RBP18.55■□□□□ 0.56
PTCH1-217ENST00000548420 LDLRAD1Q5T700 205 aa18.55■□□□□ 0.56
PTCH1-217ENST00000548420 DEFB123Q8N688 67 aa18.55■□□□□ 0.56
PTCH1-217ENST00000548420 FZD1Q9UP38 647 aa18.55■□□□□ 0.56
PTCH1-217ENST00000548420 SP3Q02447 781 aa18.54■□□□□ 0.56
PTCH1-217ENST00000548420 DDX10Q13206 875 aaKnown RBP18.54■□□□□ 0.56
PTCH1-217ENST00000548420 GRAPQ13588 217 aa18.54■□□□□ 0.56
PTCH1-217ENST00000548420 PRKG1Q13976 671 aa18.54■□□□□ 0.56
PTCH1-217ENST00000548420 UBE2Q1Q7Z7E8 422 aa18.54■□□□□ 0.56
PTCH1-217ENST00000548420 PHF6Q8IWS0 365 aaKnown RBP eCLIP18.54■□□□□ 0.56
PTCH1-217ENST00000548420 GRAPLQ8TC17 118 aaPredicted RBP18.54■□□□□ 0.56
PTCH1-217ENST00000548420 COL4A1P02462 1669 aa18.54■□□□□ 0.56
PTCH1-217ENST00000548420 LAMB1P07942 1786 aa18.53■□□□□ 0.56
PTCH1-217ENST00000548420 MANSC4A6NHS7 340 aaPredicted RBP18.53■□□□□ 0.56
PTCH1-217ENST00000548420 TCIRG1Q13488 830 aa18.53■□□□□ 0.56
PTCH1-217ENST00000548420 NBPF11Q86T75 865 aa18.53■□□□□ 0.56
PTCH1-217ENST00000548420 GAS2L2Q8NHY3 880 aa18.53■□□□□ 0.56
PTCH1-217ENST00000548420 SH3TC2Q8TF17 1288 aa18.53■□□□□ 0.56
PTCH1-217ENST00000548420 MTMR10Q9NXD2 777 aa18.53■□□□□ 0.56
PTCH1-217ENST00000548420 LAMB4A4D0S4 1761 aa18.53■□□□□ 0.56
PTCH1-217ENST00000548420 DDX60Q8IY21 1712 aaKnown RBP18.52■□□□□ 0.56
PTCH1-217ENST00000548420 HCLS1P14317 486 aaPredicted RBP18.52■□□□□ 0.56
PTCH1-217ENST00000548420 NBPF9Q3BBW0 867 aa18.52■□□□□ 0.56
PTCH1-217ENST00000548420 PPP1R42Q7Z4L9 355 aa18.52■□□□□ 0.56
PTCH1-217ENST00000548420 GMLQ99445 158 aa18.52■□□□□ 0.56
PTCH1-217ENST00000548420 MYOZ2Q9NPC6 264 aa18.52■□□□□ 0.56
PTCH1-217ENST00000548420 NSFL1CQ9UNZ2 370 aaKnown RBP18.52■□□□□ 0.56
PTCH1-217ENST00000548420 INHBEP58166 350 aa18.51■□□□□ 0.55
PTCH1-217ENST00000548420 GPSM2P81274 684 aa18.51■□□□□ 0.55
PTCH1-217ENST00000548420 GIGYF2Q6Y7W6 1299 aaKnown RBP18.51■□□□□ 0.55
PTCH1-217ENST00000548420 CFAP53Q96M91 514 aa18.51■□□□□ 0.55
PTCH1-217ENST00000548420 STAP2Q9UGK3 403 aa18.51■□□□□ 0.55
PTCH1-217ENST00000548420 C6orf229H3BNL8 230 aa18.5■□□□□ 0.55
PTCH1-217ENST00000548420 DDX46Q7L014 1031 aaKnown RBP18.5■□□□□ 0.55
PTCH1-217ENST00000548420 PTPN18Q99952 460 aa18.5■□□□□ 0.55
PTCH1-217ENST00000548420 RAPGEFL1Q9UHV5 662 aa18.5■□□□□ 0.55
PTCH1-217ENST00000548420 ZSWIM8A7E2V4 1837 aa18.49■□□□□ 0.55
PTCH1-217ENST00000548420 COL9A1P20849 921 aa18.49■□□□□ 0.55
PTCH1-217ENST00000548420 GPR153Q6NV75 609 aa18.49■□□□□ 0.55
PTCH1-217ENST00000548420 RSBN1LQ6PCB5 846 aaPredicted RBP18.49■□□□□ 0.55
PTCH1-217ENST00000548420 KIF6Q6ZMV9 814 aa18.49■□□□□ 0.55
PTCH1-217ENST00000548420 PHACTR3Q96KR7 559 aa18.49■□□□□ 0.55
PTCH1-217ENST00000548420 UTP14AQ9BVJ6 771 aaKnown RBP18.49■□□□□ 0.55
PTCH1-217ENST00000548420 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.49■□□□□ 0.55
PTCH1-217ENST00000548420 RRP7AQ9Y3A4 280 aaKnown RBP18.49■□□□□ 0.55
PTCH1-217ENST00000548420 U2SURPO15042 1029 aaKnown RBP18.48■□□□□ 0.55
PTCH1-217ENST00000548420 RALBP1Q15311 655 aa18.48■□□□□ 0.55
PTCH1-217ENST00000548420 MTFR1Q15390 333 aa18.48■□□□□ 0.55
PTCH1-217ENST00000548420 ARMC9Q7Z3E5 817 aa18.48■□□□□ 0.55
PTCH1-217ENST00000548420 AGBL3Q8NEM8 1001 aa18.48■□□□□ 0.55
PTCH1-217ENST00000548420 CLMNQ96JQ2 1002 aa18.48■□□□□ 0.55
PTCH1-217ENST00000548420 PARP10Q53GL7 1025 aa18.47■□□□□ 0.55
PTCH1-217ENST00000548420 CELF1Q92879 486 aaKnown RBP18.47■□□□□ 0.55
PTCH1-217ENST00000548420 WNK4Q96J92 1243 aa18.47■□□□□ 0.55
PTCH1-217ENST00000548420 ANGEL1Q9UNK9 670 aaKnown RBP18.47■□□□□ 0.55
PTCH1-217ENST00000548420 ZNF646O15015 1829 aaPredicted RBP18.46■□□□□ 0.55
PTCH1-217ENST00000548420 PSME4Q14997 1843 aa18.46■□□□□ 0.55
PTCH1-217ENST00000548420 TTC28Q96AY4 2481 aa18.46■□□□□ 0.55
PTCH1-217ENST00000548420 USP17L8P0C7I0 530 aa18.46■□□□□ 0.55
PTCH1-217ENST00000548420 MYL6BP14649 208 aa18.46■□□□□ 0.55
PTCH1-217ENST00000548420 GJA5P36382 358 aa18.46■□□□□ 0.55
PTCH1-217ENST00000548420 ANKRD13DQ6ZTN6 518 aa18.46■□□□□ 0.55
PTCH1-217ENST00000548420 MCM10Q7L590 875 aa18.46■□□□□ 0.55
PTCH1-217ENST00000548420 TBC1D16Q8TBP0 767 aa18.46■□□□□ 0.55
PTCH1-217ENST00000548420 NUDCQ9Y266 331 aa18.46■□□□□ 0.55
PTCH1-217ENST00000548420 NR2E3Q9Y5X4 410 aa18.46■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms