RNA–Protein interactions for RNA: ENST00000547856.5

RAPGEF3-216, Transcript of Rap guanine nucleotide exchange factor 3, humanhuman

TSL 2

Gene RAPGEF3, Length 2,659 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3-216ENST00000547856 GSDMDP57764 484 aa16.7■□□□□ 0.26
RAPGEF3-216ENST00000547856 TSGA10IPQ3SY00 556 aa16.7■□□□□ 0.26
RAPGEF3-216ENST00000547856 NALCNQ8IZF0 1738 aa16.7■□□□□ 0.26
RAPGEF3-216ENST00000547856 FANCGO15287 622 aa16.69■□□□□ 0.26
RAPGEF3-216ENST00000547856 ETF1P62495 437 aaKnown RBP16.69■□□□□ 0.26
RAPGEF3-216ENST00000547856 SLIT1O75093 1534 aa16.69■□□□□ 0.26
RAPGEF3-216ENST00000547856 PLEKHG2Q9H7P9 1386 aa16.69■□□□□ 0.26
RAPGEF3-216ENST00000547856 ARFGAP3Q9NP61 516 aa16.69■□□□□ 0.26
RAPGEF3-216ENST00000547856 ARHGAP23Q9P227 1491 aa16.69■□□□□ 0.26
RAPGEF3-216ENST00000547856 CT47A1Q5JQC4 288 aaPredicted RBP16.68■□□□□ 0.26
RAPGEF3-216ENST00000547856 CCDC158Q5M9N0 1113 aa16.68■□□□□ 0.26
RAPGEF3-216ENST00000547856 EXOC4Q96A65 974 aa16.68■□□□□ 0.26
RAPGEF3-216ENST00000547856 FTOQ9C0B1 505 aaKnown RBP eCLIP16.68■□□□□ 0.26
RAPGEF3-216ENST00000547856 XPO4Q9C0E2 1151 aaKnown RBP16.68■□□□□ 0.26
RAPGEF3-216ENST00000547856 DEF6Q9H4E7 631 aa16.68■□□□□ 0.26
RAPGEF3-216ENST00000547856 IFNKQ9P0W0 207 aa16.68■□□□□ 0.26
RAPGEF3-216ENST00000547856 EIF3CLB5ME19 914 aaKnown RBP16.68■□□□□ 0.26
RAPGEF3-216ENST00000547856 RAB11FIP3O75154 756 aa16.68■□□□□ 0.26
RAPGEF3-216ENST00000547856 ATP8B2P98198 1209 aa16.68■□□□□ 0.26
RAPGEF3-216ENST00000547856 EIF3CQ99613 913 aaKnown RBP16.68■□□□□ 0.26
RAPGEF3-216ENST00000547856 BRMS1Q9HCU9 246 aa16.68■□□□□ 0.26
RAPGEF3-216ENST00000547856 MAGEA9P43362 315 aa16.67■□□□□ 0.26
RAPGEF3-216ENST00000547856 CCT4P50991 539 aaKnown RBP16.67■□□□□ 0.26
RAPGEF3-216ENST00000547856 ZSWIM4Q9H7M6 989 aa16.67■□□□□ 0.26
RAPGEF3-216ENST00000547856 EFCAB8A8MWE9 144 aa16.67■□□□□ 0.26
RAPGEF3-216ENST00000547856 CAVIN2O95810 425 aa16.67■□□□□ 0.26
RAPGEF3-216ENST00000547856 GOLGA8FQ08AF8 430 aa16.67■□□□□ 0.26
RAPGEF3-216ENST00000547856 GOLGA8DPQ0D2H9 430 aa16.67■□□□□ 0.26
RAPGEF3-216ENST00000547856 MCM6Q14566 821 aa16.67■□□□□ 0.26
RAPGEF3-216ENST00000547856 PTPN21Q16825 1174 aa16.67■□□□□ 0.26
RAPGEF3-216ENST00000547856 CCAR1Q8IX12 1150 aaKnown RBP16.67■□□□□ 0.26
RAPGEF3-216ENST00000547856 PARD6BQ9BYG5 372 aa16.67■□□□□ 0.26
RAPGEF3-216ENST00000547856 ZSWIM6Q9HCJ5 1215 aa16.67■□□□□ 0.26
RAPGEF3-216ENST00000547856 KCND1Q9NSA2 647 aa16.67■□□□□ 0.26
RAPGEF3-216ENST00000547856 TBX22Q9Y458 520 aa16.67■□□□□ 0.26
RAPGEF3-216ENST00000547856 FER1L4A9Z1Z3 1794 aa16.66■□□□□ 0.26
RAPGEF3-216ENST00000547856 PSDA5PKW4 1024 aaPredicted RBP16.66■□□□□ 0.26
RAPGEF3-216ENST00000547856 SURF6O75683 361 aaKnown RBP16.66■□□□□ 0.26
RAPGEF3-216ENST00000547856 PDCP20941 246 aa16.66■□□□□ 0.26
RAPGEF3-216ENST00000547856 CNTROBQ8N137 903 aa16.66■□□□□ 0.26
RAPGEF3-216ENST00000547856 FUT8Q9BYC5 575 aa16.66■□□□□ 0.26
RAPGEF3-216ENST00000547856 USP31Q70CQ4 1352 aa16.66■□□□□ 0.26
RAPGEF3-216ENST00000547856 ATP2B1P20020 1258 aa16.66■□□□□ 0.26
RAPGEF3-216ENST00000547856 DHX37Q8IY37 1157 aaKnown RBP16.66■□□□□ 0.26
RAPGEF3-216ENST00000547856 PI4K2BQ8TCG2 481 aa16.66■□□□□ 0.26
RAPGEF3-216ENST00000547856 GOLPH3LQ9H4A5 285 aa16.66■□□□□ 0.26
RAPGEF3-216ENST00000547856 RGPD1P0DJD0 1748 aa16.65■□□□□ 0.26
RAPGEF3-216ENST00000547856 ATP8B1O43520 1251 aa16.65■□□□□ 0.26
RAPGEF3-216ENST00000547856 JAK2O60674 1132 aa16.65■□□□□ 0.26
RAPGEF3-216ENST00000547856 LRRFIP1Q32MZ4 808 aaKnown RBP16.65■□□□□ 0.26
RAPGEF3-216ENST00000547856 CEP57L1Q8IYX8 460 aa16.65■□□□□ 0.26
RAPGEF3-216ENST00000547856 OSBPL5Q9H0X9 879 aaPredicted RBP16.65■□□□□ 0.26
RAPGEF3-216ENST00000547856 PDE11AQ9HCR9 933 aa16.65■□□□□ 0.26
RAPGEF3-216ENST00000547856 PARP3Q9Y6F1 533 aa16.65■□□□□ 0.26
RAPGEF3-216ENST00000547856 TRIM65Q6PJ69 517 aa16.64■□□□□ 0.26
RAPGEF3-216ENST00000547856 BANK1Q8NDB2 785 aa16.64■□□□□ 0.26
RAPGEF3-216ENST00000547856 N4BP1O75113 896 aaKnown RBP16.64■□□□□ 0.25
RAPGEF3-216ENST00000547856 HAP1P54257 671 aaPredicted RBP16.64■□□□□ 0.25
RAPGEF3-216ENST00000547856 UTP14AQ9BVJ6 771 aaKnown RBP16.64■□□□□ 0.25
RAPGEF3-216ENST00000547856 ANO10Q9NW15 660 aa16.64■□□□□ 0.25
RAPGEF3-216ENST00000547856 CHL1O00533 1208 aa16.63■□□□□ 0.25
RAPGEF3-216ENST00000547856 EPB41L2O43491 1005 aaKnown RBP16.63■□□□□ 0.25
RAPGEF3-216ENST00000547856 NRDCO43847 1150 aa16.63■□□□□ 0.25
RAPGEF3-216ENST00000547856 PHACTR2O75167 634 aa16.63■□□□□ 0.25
RAPGEF3-216ENST00000547856 LONRF2Q1L5Z9 754 aa16.63■□□□□ 0.25
RAPGEF3-216ENST00000547856 CCDC150Q8NCX0 1101 aa16.63■□□□□ 0.25
RAPGEF3-216ENST00000547856 MAP3K19Q56UN5 1328 aa16.63■□□□□ 0.25
RAPGEF3-216ENST00000547856 PHLPP2Q6ZVD8 1323 aa16.63■□□□□ 0.25
RAPGEF3-216ENST00000547856 DIP2AQ14689 1571 aa16.63■□□□□ 0.25
RAPGEF3-216ENST00000547856 H3BQV1 296 aa16.63■□□□□ 0.25
RAPGEF3-216ENST00000547856 CLGNO14967 610 aa16.63■□□□□ 0.25
RAPGEF3-216ENST00000547856 IVLP07476 585 aa16.63■□□□□ 0.25
RAPGEF3-216ENST00000547856 TPM1P09493 284 aa16.63■□□□□ 0.25
RAPGEF3-216ENST00000547856 ZKSCAN1P17029 563 aaPredicted RBP16.63■□□□□ 0.25
RAPGEF3-216ENST00000547856 IFFO2Q5TF58 517 aa16.63■□□□□ 0.25
RAPGEF3-216ENST00000547856 KINO60870 393 aaKnown RBP16.63■□□□□ 0.25
RAPGEF3-216ENST00000547856 PPFIA3O75145 1194 aa16.63■□□□□ 0.25
RAPGEF3-216ENST00000547856 BIN1O00499 593 aa16.62■□□□□ 0.25
RAPGEF3-216ENST00000547856 WWC2Q6AWC2 1192 aa16.62■□□□□ 0.25
RAPGEF3-216ENST00000547856 ISM2Q6H9L7 571 aa16.62■□□□□ 0.25
RAPGEF3-216ENST00000547856 THEMISQ8N1K5 641 aaPredicted RBP16.62■□□□□ 0.25
RAPGEF3-216ENST00000547856 PSD3Q9NYI0 1048 aa16.62■□□□□ 0.25
RAPGEF3-216ENST00000547856 IMPACTQ9P2X3 320 aa16.62■□□□□ 0.25
RAPGEF3-216ENST00000547856 PPP2R3AQ06190 1150 aa16.62■□□□□ 0.25
RAPGEF3-216ENST00000547856 CCDC73Q6ZRK6 1079 aa16.62■□□□□ 0.25
RAPGEF3-216ENST00000547856 GPR161Q8N6U8 529 aaKnown RBP16.62■□□□□ 0.25
RAPGEF3-216ENST00000547856 BRF1Q92994 677 aa16.62■□□□□ 0.25
RAPGEF3-216ENST00000547856 NBPF6Q5VWK0 638 aa16.61■□□□□ 0.25
RAPGEF3-216ENST00000547856 TTLL5Q6EMB2 1281 aa16.61■□□□□ 0.25
RAPGEF3-216ENST00000547856 IQUBQ8NA54 791 aa16.61■□□□□ 0.25
RAPGEF3-216ENST00000547856 NGDNQ8NEJ9 315 aaKnown RBP16.61■□□□□ 0.25
RAPGEF3-216ENST00000547856 NBPF4Q96M43 638 aa16.61■□□□□ 0.25
RAPGEF3-216ENST00000547856 SRRTQ9BXP5 876 aaKnown RBP16.61■□□□□ 0.25
RAPGEF3-216ENST00000547856 FMN2Q9NZ56 1722 aa16.61■□□□□ 0.25
RAPGEF3-216ENST00000547856 FAN1Q9Y2M0 1017 aa16.61■□□□□ 0.25
RAPGEF3-216ENST00000547856 RIMS1Q86UR5 1692 aaKnown RBP16.61■□□□□ 0.25
RAPGEF3-216ENST00000547856 ADCY9O60503 1353 aa16.61■□□□□ 0.25
RAPGEF3-216ENST00000547856 GNG11P61952 73 aa16.61■□□□□ 0.25
RAPGEF3-216ENST00000547856 RHPN1Q8TCX5 695 aa16.61■□□□□ 0.25
RAPGEF3-216ENST00000547856 KCNG1Q9UIX4 513 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms