RNA–Protein interactions for RNA: ENST00000545686.6

TDP1-204, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene TDP1, Length 2,488 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-204ENST00000545686 IGKV5-2P06315 115 aa10.29□□□□□ -0.76
TDP1-204ENST00000545686 STK3Q13188 491 aa10.29□□□□□ -0.76
TDP1-204ENST00000545686 CACTINQ8WUQ7 758 aaKnown RBP10.29□□□□□ -0.76
TDP1-204ENST00000545686 CHMP4CQ96CF2 233 aa10.29□□□□□ -0.76
TDP1-204ENST00000545686 NRBP1Q9UHY1 535 aa10.29□□□□□ -0.76
TDP1-204ENST00000545686 RCOR1Q9UKL0 485 aa10.29□□□□□ -0.76
TDP1-204ENST00000545686 SH3TC1Q8TE82 1336 aa10.29□□□□□ -0.76
TDP1-204ENST00000545686 PDIA6Q15084 440 aa10.28□□□□□ -0.76
TDP1-204ENST00000545686 Q6ZUG5 572 aa10.28□□□□□ -0.76
TDP1-204ENST00000545686 LRRC8AQ8IWT6 810 aa10.28□□□□□ -0.76
TDP1-204ENST00000545686 PALLDQ8WX93 1383 aa10.28□□□□□ -0.76
TDP1-204ENST00000545686 ZNF142P52746 1687 aaPredicted RBP10.28□□□□□ -0.76
TDP1-204ENST00000545686 GCKRQ14397 625 aa10.28□□□□□ -0.76
TDP1-204ENST00000545686 TPD52L1Q16890 204 aaPredicted RBP10.28□□□□□ -0.76
TDP1-204ENST00000545686 MYH7P12883 1935 aa10.27□□□□□ -0.76
TDP1-204ENST00000545686 HSP90B1P14625 803 aaKnown RBP10.27□□□□□ -0.77
TDP1-204ENST00000545686 U2AF2P26368 475 aaKnown RBP eCLIP10.27□□□□□ -0.77
TDP1-204ENST00000545686 ADD1P35611 737 aaKnown RBP10.27□□□□□ -0.77
TDP1-204ENST00000545686 CEBPAP49715 358 aaPredicted RBP10.27□□□□□ -0.77
TDP1-204ENST00000545686 CCDC144BQ3MJ40 725 aa10.27□□□□□ -0.77
TDP1-204ENST00000545686 MCMDC2Q4G0Z9 681 aa10.27□□□□□ -0.77
TDP1-204ENST00000545686 TNNI3KQ59H18 835 aa10.27□□□□□ -0.77
TDP1-204ENST00000545686 CCDC73Q6ZRK6 1079 aa10.27□□□□□ -0.77
TDP1-204ENST00000545686 RIC3Q7Z5B4 369 aa10.27□□□□□ -0.77
TDP1-204ENST00000545686 CCDC144CPQ8IYA2 1237 aa10.27□□□□□ -0.77
TDP1-204ENST00000545686 LRRC59Q96AG4 307 aaKnown RBP10.27□□□□□ -0.77
TDP1-204ENST00000545686 ZNF396Q96N95 335 aaPredicted RBP10.27□□□□□ -0.77
TDP1-204ENST00000545686 SIL1Q9H173 461 aa10.27□□□□□ -0.77
TDP1-204ENST00000545686 ANO10Q9NW15 660 aa10.27□□□□□ -0.77
TDP1-204ENST00000545686 CTNNA3Q9UI47 895 aa10.27□□□□□ -0.77
TDP1-204ENST00000545686 DBNLQ9UJU6 430 aaKnown RBP10.27□□□□□ -0.77
TDP1-204ENST00000545686 FPGT-TNNI3KV9GXZ4 949 aa10.27□□□□□ -0.77
TDP1-204ENST00000545686 PLEKHG2Q9H7P9 1386 aa10.27□□□□□ -0.77
TDP1-204ENST00000545686 KIF2AO00139 706 aaPredicted RBP10.27□□□□□ -0.77
TDP1-204ENST00000545686 DHX8Q14562 1220 aaKnown RBP10.27□□□□□ -0.77
TDP1-204ENST00000545686 RABL6Q3YEC7 729 aaPredicted RBP10.27□□□□□ -0.77
TDP1-204ENST00000545686 CEP135Q66GS9 1140 aa10.27□□□□□ -0.77
TDP1-204ENST00000545686 NYAP1Q6ZVC0 841 aa10.27□□□□□ -0.77
TDP1-204ENST00000545686 HAUS7Q99871 368 aa10.27□□□□□ -0.77
TDP1-204ENST00000545686 METTL22Q9BUU2 404 aaPredicted RBP10.27□□□□□ -0.77
TDP1-204ENST00000545686 AGXT2Q9BYV1 514 aa10.27□□□□□ -0.77
TDP1-204ENST00000545686 PARP4Q9UKK3 1724 aaKnown RBP10.27□□□□□ -0.77
TDP1-204ENST00000545686 KINO60870 393 aaKnown RBP10.26□□□□□ -0.77
TDP1-204ENST00000545686 CYP21A2P08686 494 aa10.26□□□□□ -0.77
TDP1-204ENST00000545686 RFX5P48382 616 aaPredicted RBP10.26□□□□□ -0.77
TDP1-204ENST00000545686 GSDMDP57764 484 aa10.26□□□□□ -0.77
TDP1-204ENST00000545686 FAM160A1Q05DH4 1040 aa10.26□□□□□ -0.77
TDP1-204ENST00000545686 GABPB1Q06547 395 aaPredicted RBP10.26□□□□□ -0.77
TDP1-204ENST00000545686 SCRN1Q12765 414 aa10.26□□□□□ -0.77
TDP1-204ENST00000545686 ARHGEF25Q86VW2 580 aa10.26□□□□□ -0.77
TDP1-204ENST00000545686 NSUN7Q8NE18 718 aaKnown RBP10.26□□□□□ -0.77
TDP1-204ENST00000545686 NUP188Q5SRE5 1749 aa10.26□□□□□ -0.77
TDP1-204ENST00000545686 PKD1L3Q7Z443 1732 aa10.26□□□□□ -0.77
TDP1-204ENST00000545686 PRAMEF22A3QJZ6 481 aa10.26□□□□□ -0.77
TDP1-204ENST00000545686 C11orf57Q6ZUT1 292 aaPredicted RBP10.26□□□□□ -0.77
TDP1-204ENST00000545686 DHX32Q7L7V1 743 aaKnown RBP10.26□□□□□ -0.77
TDP1-204ENST00000545686 CCAR1Q8IX12 1150 aaKnown RBP10.26□□□□□ -0.77
TDP1-204ENST00000545686 CEP57L1Q8IYX8 460 aa10.26□□□□□ -0.77
TDP1-204ENST00000545686 NAT10Q9H0A0 1025 aaKnown RBP10.26□□□□□ -0.77
TDP1-204ENST00000545686 DDX41Q9UJV9 622 aaKnown RBP10.26□□□□□ -0.77
TDP1-204ENST00000545686 SALL1Q9NSC2 1324 aa10.26□□□□□ -0.77
TDP1-204ENST00000545686 TJP1Q07157 1748 aa10.25□□□□□ -0.77
TDP1-204ENST00000545686 BECN2A8MW95 431 aa10.25□□□□□ -0.77
TDP1-204ENST00000545686 SNW1Q13573 536 aaKnown RBP10.25□□□□□ -0.77
TDP1-204ENST00000545686 ENGASEQ8NFI3 743 aa10.25□□□□□ -0.77
TDP1-204ENST00000545686 DSCC1Q9BVC3 393 aa10.25□□□□□ -0.77
TDP1-204ENST00000545686 IMPACTQ9P2X3 320 aa10.25□□□□□ -0.77
TDP1-204ENST00000545686 SPDYE4A6NLX3 237 aa10.25□□□□□ -0.77
TDP1-204ENST00000545686 PTPN12Q05209 780 aaKnown RBP10.25□□□□□ -0.77
TDP1-204ENST00000545686 PSME1Q06323 249 aa10.25□□□□□ -0.77
TDP1-204ENST00000545686 AIMP1Q12904 312 aaKnown RBP10.25□□□□□ -0.77
TDP1-204ENST00000545686 PTPN14Q15678 1187 aa10.25□□□□□ -0.77
TDP1-204ENST00000545686 SLFNL1Q499Z3 407 aa10.25□□□□□ -0.77
TDP1-204ENST00000545686 DHX40Q8IX18 779 aaKnown RBP10.25□□□□□ -0.77
TDP1-204ENST00000545686 KBTBD3Q8NAB2 608 aa10.25□□□□□ -0.77
TDP1-204ENST00000545686 ANKRD24Q8TF21 1146 aa10.25□□□□□ -0.77
TDP1-204ENST00000545686 HELLSQ9NRZ9 838 aa10.25□□□□□ -0.77
TDP1-204ENST00000545686 ZHX1Q9UKY1 873 aaPredicted RBP10.25□□□□□ -0.77
TDP1-204ENST00000545686 ALS2Q96Q42 1657 aa10.24□□□□□ -0.77
TDP1-204ENST00000545686 GLI3P10071 1580 aa10.24□□□□□ -0.77
TDP1-204ENST00000545686 MST1RQ04912 1400 aa10.24□□□□□ -0.77
TDP1-204ENST00000545686 PTPDC1A2A3K4 754 aa10.24□□□□□ -0.77
TDP1-204ENST00000545686 CCZ1BP86790 482 aa10.24□□□□□ -0.77
TDP1-204ENST00000545686 CCZ1P86791 482 aaPredicted RBP10.24□□□□□ -0.77
TDP1-204ENST00000545686 FGD1P98174 961 aa10.24□□□□□ -0.77
TDP1-204ENST00000545686 EPHA10Q5JZY3 1008 aa10.24□□□□□ -0.77
TDP1-204ENST00000545686 ZNF790Q6PG37 636 aa10.24□□□□□ -0.77
TDP1-204ENST00000545686 ZNF397Q8NF99 534 aaPredicted RBP10.24□□□□□ -0.77
TDP1-204ENST00000545686 KLHDC4Q8TBB5 520 aa10.24□□□□□ -0.77
TDP1-204ENST00000545686 EDC3Q96F86 508 aaKnown RBP10.24□□□□□ -0.77
TDP1-204ENST00000545686 DDX11Q96FC9 970 aa10.24□□□□□ -0.77
TDP1-204ENST00000545686 BPIFA3Q9BQP9 254 aa10.24□□□□□ -0.77
TDP1-204ENST00000545686 OSBPL5Q9H0X9 879 aaPredicted RBP10.24□□□□□ -0.77
TDP1-204ENST00000545686 GOLPH3LQ9H4A5 285 aa10.24□□□□□ -0.77
TDP1-204ENST00000545686 MORC2Q9Y6X9 1032 aaPredicted RBP10.24□□□□□ -0.77
TDP1-204ENST00000545686 NWD2Q9ULI1 1742 aa10.24□□□□□ -0.77
TDP1-204ENST00000545686 KDM6AO15550 1401 aaPredicted RBP10.24□□□□□ -0.77
TDP1-204ENST00000545686 CCDC69A6NI79 296 aa10.24□□□□□ -0.77
TDP1-204ENST00000545686 SKILP12757 684 aa10.24□□□□□ -0.77
TDP1-204ENST00000545686 KCNJ6P48051 423 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms