RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 IFIT1P09914 478 aaKnown RBP21.43■■□□□ 1.02
VIM-209ENST00000544301 CCDC57Q2TAC2 916 aa21.43■■□□□ 1.02
VIM-209ENST00000544301 SLFNL1Q499Z3 407 aa21.43■■□□□ 1.02
VIM-209ENST00000544301 ZMYM1Q5SVZ6 1142 aa21.43■■□□□ 1.02
VIM-209ENST00000544301 PCCAP05165 728 aaPredicted RBP21.42■■□□□ 1.02
VIM-209ENST00000544301 STK3Q13188 491 aa21.42■■□□□ 1.02
VIM-209ENST00000544301 RNF214Q8ND24 703 aa21.42■■□□□ 1.02
VIM-209ENST00000544301 CEP126Q9P2H0 1117 aa21.42■■□□□ 1.02
VIM-209ENST00000544301 STARD3NLO95772 234 aa21.41■■□□□ 1.02
VIM-209ENST00000544301 CDC37L1Q7L3B6 337 aa21.41■■□□□ 1.02
VIM-209ENST00000544301 PPIL4Q8WUA2 492 aaKnown RBP eCLIP21.41■■□□□ 1.02
VIM-209ENST00000544301 Q6ZUG5 572 aa21.41■■□□□ 1.02
VIM-209ENST00000544301 FAM89AQ96GI7 184 aa21.41■■□□□ 1.02
VIM-209ENST00000544301 DSCC1Q9BVC3 393 aa21.41■■□□□ 1.02
VIM-209ENST00000544301 PLA2G12BQ9BX93 195 aa21.41■■□□□ 1.02
VIM-209ENST00000544301 FBXO3Q9UK99 471 aa21.41■■□□□ 1.02
VIM-209ENST00000544301 HS1BP3Q53T59 392 aa21.4■■□□□ 1.02
VIM-209ENST00000544301 ZSCAN30Q86W11 494 aa21.4■■□□□ 1.02
VIM-209ENST00000544301 LETM1O95202 739 aaPredicted RBP21.4■■□□□ 1.02
VIM-209ENST00000544301 TPRNQ4KMQ1 711 aa21.4■■□□□ 1.02
VIM-209ENST00000544301 STOX1Q6ZVD7 989 aa21.4■■□□□ 1.02
VIM-209ENST00000544301 ZBTB38Q8NAP3 1195 aaPredicted RBP21.4■■□□□ 1.02
VIM-209ENST00000544301 GTF3C6Q969F1 213 aa21.4■■□□□ 1.02
VIM-209ENST00000544301 SPEF2Q9C093 1822 aa21.39■■□□□ 1.02
VIM-209ENST00000544301 MAP3K15Q6ZN16 1313 aa21.39■■□□□ 1.01
VIM-209ENST00000544301 ITGB4P16144 1822 aa21.39■■□□□ 1.01
VIM-209ENST00000544301 RNF113AO15541 343 aaKnown RBP21.39■■□□□ 1.01
VIM-209ENST00000544301 CSF1RP07333 972 aa21.39■■□□□ 1.01
VIM-209ENST00000544301 ZBTB4Q9P1Z0 1013 aaPredicted RBP21.38■■□□□ 1.01
VIM-209ENST00000544301 DISP2A7MBM2 1401 aa21.38■■□□□ 1.01
VIM-209ENST00000544301 GIGYF2Q6Y7W6 1299 aaKnown RBP21.38■■□□□ 1.01
VIM-209ENST00000544301 FERMT3Q86UX7 667 aa21.38■■□□□ 1.01
VIM-209ENST00000544301 AKAP2Q9Y2D5 859 aa21.38■■□□□ 1.01
VIM-209ENST00000544301 MAST3O60307 1309 aa21.37■■□□□ 1.01
VIM-209ENST00000544301 HMGB1P09429 215 aaKnown RBP21.37■■□□□ 1.01
VIM-209ENST00000544301 ADORA1P30542 326 aa21.37■■□□□ 1.01
VIM-209ENST00000544301 CCDC85AQ96PX6 553 aaPredicted RBP21.37■■□□□ 1.01
VIM-209ENST00000544301 HSPD1P10809 573 aaKnown RBP21.37■■□□□ 1.01
VIM-209ENST00000544301 KRT85P78386 507 aa21.37■■□□□ 1.01
VIM-209ENST00000544301 XAGE2Q96GT9 111 aa21.37■■□□□ 1.01
VIM-209ENST00000544301 JAK2O60674 1132 aa21.36■■□□□ 1.01
VIM-209ENST00000544301 IFIT5Q13325 482 aaKnown RBP21.36■■□□□ 1.01
VIM-209ENST00000544301 HLFQ16534 295 aa21.36■■□□□ 1.01
VIM-209ENST00000544301 CCDC158Q5M9N0 1113 aa21.36■■□□□ 1.01
VIM-209ENST00000544301 ANO8Q9HCE9 1232 aaPredicted RBP21.36■■□□□ 1.01
VIM-209ENST00000544301 BCL9O00512 1426 aa21.36■■□□□ 1.01
VIM-209ENST00000544301 HSP90B1P14625 803 aaKnown RBP21.35■■□□□ 1.01
VIM-209ENST00000544301 TAF7LQ5H9L4 462 aa21.35■■□□□ 1.01
VIM-209ENST00000544301 TTC39AQ5SRH9 613 aa21.35■■□□□ 1.01
VIM-209ENST00000544301 DHX32Q7L7V1 743 aaKnown RBP21.35■■□□□ 1.01
VIM-209ENST00000544301 BRF1Q92994 677 aa21.35■■□□□ 1.01
VIM-209ENST00000544301 SLC4A9Q96Q91 983 aa21.35■■□□□ 1.01
VIM-209ENST00000544301 LRRC2Q9BYS8 371 aa21.35■■□□□ 1.01
VIM-209ENST00000544301 LAMA4Q16363 1823 aa21.35■■□□□ 1.01
VIM-209ENST00000544301 TNKS1BP1Q9C0C2 1729 aaKnown RBP21.35■■□□□ 1.01
VIM-209ENST00000544301 FKBP4Q02790 459 aaKnown RBP eCLIP21.35■■□□□ 1.01
VIM-209ENST00000544301 GORABQ5T7V8 394 aa21.35■■□□□ 1.01
VIM-209ENST00000544301 FAM173BQ6P4H8 233 aa21.35■■□□□ 1.01
VIM-209ENST00000544301 TTC6Q86TZ1 520 aa21.35■■□□□ 1.01
VIM-209ENST00000544301 SYNE4Q8N205 404 aa21.35■■□□□ 1.01
VIM-209ENST00000544301 FAM184AQ8NB25 1140 aa21.35■■□□□ 1.01
VIM-209ENST00000544301 CDHR2Q9BYE9 1310 aa21.34■■□□□ 1.01
VIM-209ENST00000544301 M0R2C6 588 aa21.34■■□□□ 1.01
VIM-209ENST00000544301 CYP19A1P11511 503 aaPredicted RBP21.34■■□□□ 1.01
VIM-209ENST00000544301 NLRP10Q86W26 655 aa21.34■■□□□ 1.01
VIM-209ENST00000544301 GPTP24298 496 aa21.34■■□□□ 1.01
VIM-209ENST00000544301 EXOSC10Q01780 885 aaKnown RBP21.34■■□□□ 1.01
VIM-209ENST00000544301 KLHL34Q8N239 644 aa21.34■■□□□ 1.01
VIM-209ENST00000544301 OSBP2Q969R2 916 aa21.34■■□□□ 1.01
VIM-209ENST00000544301 COL14A1Q05707 1796 aaKnown RBP21.33■■□□□ 1.01
VIM-209ENST00000544301 ELP1O95163 1332 aa21.33■■□□□ 1.01
VIM-209ENST00000544301 A0A0G2JLW4 131 aa21.33■■□□□ 1.01
VIM-209ENST00000544301 FGD1P98174 961 aa21.33■■□□□ 1.01
VIM-209ENST00000544301 SCRN1Q12765 414 aa21.33■■□□□ 1.01
VIM-209ENST00000544301 E7EWF7 191 aa21.32■■□□□ 1
VIM-209ENST00000544301 PFKFB2O60825 505 aa21.32■■□□□ 1
VIM-209ENST00000544301 UVSSAQ2YD98 709 aa21.32■■□□□ 1
VIM-209ENST00000544301 HSP90AB3PQ58FF7 597 aa21.32■■□□□ 1
VIM-209ENST00000544301 NOL7Q9UMY1 257 aaKnown RBP21.32■■□□□ 1
VIM-209ENST00000544301 LRP6O75581 1613 aa21.32■■□□□ 1
VIM-209ENST00000544301 LRRFIP1Q32MZ4 808 aaKnown RBP21.32■■□□□ 1
VIM-209ENST00000544301 RIC1Q4ADV7 1423 aa21.32■■□□□ 1
VIM-209ENST00000544301 AGXT2Q9BYV1 514 aa21.32■■□□□ 1
VIM-209ENST00000544301 MSNP26038 577 aaKnown RBP21.31■■□□□ 1
VIM-209ENST00000544301 SCARF1Q14162 830 aa21.31■■□□□ 1
VIM-209ENST00000544301 TTLL11Q8NHH1 800 aa21.31■■□□□ 1
VIM-209ENST00000544301 RIPOR2Q9Y4F9 1068 aa21.31■■□□□ 1
VIM-209ENST00000544301 ZFYP08048 801 aaPredicted RBP21.31■■□□□ 1
VIM-209ENST00000544301 GIMAP6Q6P9H5 292 aa21.31■■□□□ 1
VIM-209ENST00000544301 SMARCC2Q8TAQ2 1214 aa21.31■■□□□ 1
VIM-209ENST00000544301 LLPHQ9BRT6 129 aaKnown RBP21.31■■□□□ 1
VIM-209ENST00000544301 FUCA2Q9BTY2 467 aa21.31■■□□□ 1
VIM-209ENST00000544301 ZBTB1Q9Y2K1 713 aa21.31■■□□□ 1
VIM-209ENST00000544301 ITGA6P23229 1130 aa21.3■■□□□ 1
VIM-209ENST00000544301 SCAND2PQ9GZW5 306 aaPredicted RBP21.3■■□□□ 1
VIM-209ENST00000544301 GREM2Q9H772 168 aa21.3■■□□□ 1
VIM-209ENST00000544301 EIF2AK3Q9NZJ5 1116 aaKnown RBP21.3■■□□□ 1
VIM-209ENST00000544301 EXOC5O00471 708 aa21.29■■□□□ 1
VIM-209ENST00000544301 ZAP70P43403 619 aa21.29■■□□□ 1
VIM-209ENST00000544301 CTSWP56202 376 aa21.29■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms