RNA–Protein interactions for RNA: ENST00000544246.5

PCDH9-204, Transcript of protocadherin 9, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PCDH9, Length 6,234 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-204ENST00000544246 IMPG2Q9BZV3 1241 aa11.81□□□□□ -0.52
PCDH9-204ENST00000544246 KCNK9Q9NPC2 374 aa11.81□□□□□ -0.52
PCDH9-204ENST00000544246 RPGRIP1LQ68CZ1 1315 aa11.81□□□□□ -0.52
PCDH9-204ENST00000544246 NAA25Q14CX7 972 aa11.81□□□□□ -0.52
PCDH9-204ENST00000544246 TMEM57Q8N5G2 664 aa11.81□□□□□ -0.52
PCDH9-204ENST00000544246 USP16Q9Y5T5 823 aa11.81□□□□□ -0.52
PCDH9-204ENST00000544246 CTAGE9A4FU28 777 aa11.8□□□□□ -0.52
PCDH9-204ENST00000544246 EBAG9O00559 213 aa11.8□□□□□ -0.52
PCDH9-204ENST00000544246 ZNF165P49910 485 aa11.8□□□□□ -0.52
PCDH9-204ENST00000544246 GOLGA1Q92805 767 aa11.8□□□□□ -0.52
PCDH9-204ENST00000544246 SWAP70Q9UH65 585 aa11.8□□□□□ -0.52
PCDH9-204ENST00000544246 FAM135AQ9P2D6 1515 aa11.8□□□□□ -0.52
PCDH9-204ENST00000544246 GAS8O95995 478 aa11.8□□□□□ -0.52
PCDH9-204ENST00000544246 HLA-DOAP06340 250 aa11.8□□□□□ -0.52
PCDH9-204ENST00000544246 METAP2P50579 478 aaKnown RBP eCLIP11.8□□□□□ -0.52
PCDH9-204ENST00000544246 MCM6Q14566 821 aa11.8□□□□□ -0.52
PCDH9-204ENST00000544246 CCDC141Q6ZP82 1450 aa11.8□□□□□ -0.52
PCDH9-204ENST00000544246 CAPN2P17655 700 aa11.8□□□□□ -0.52
PCDH9-204ENST00000544246 STAT6P42226 847 aa11.8□□□□□ -0.52
PCDH9-204ENST00000544246 MSANTD4Q8NCY6 345 aa11.8□□□□□ -0.52
PCDH9-204ENST00000544246 FAM13AO94988 1023 aa11.8□□□□□ -0.52
PCDH9-204ENST00000544246 PLCB3Q01970 1234 aa11.8□□□□□ -0.52
PCDH9-204ENST00000544246 ERCC6LQ2NKX8 1250 aa11.8□□□□□ -0.52
PCDH9-204ENST00000544246 JAKMIP2Q96AA8 810 aa11.8□□□□□ -0.52
PCDH9-204ENST00000544246 EPSTI1Q96J88 318 aa11.8□□□□□ -0.52
PCDH9-204ENST00000544246 SLC26A6Q9BXS9 759 aa11.8□□□□□ -0.52
PCDH9-204ENST00000544246 PRDM11Q9NQV5 511 aa11.8□□□□□ -0.52
PCDH9-204ENST00000544246 SDAD1Q9NVU7 687 aaKnown RBP eCLIP11.8□□□□□ -0.52
PCDH9-204ENST00000544246 TMOD3Q9NYL9 352 aa11.8□□□□□ -0.52
PCDH9-204ENST00000544246 SMIM23A6NLE4 172 aa11.79□□□□□ -0.52
PCDH9-204ENST00000544246 ATP11AP98196 1134 aa11.79□□□□□ -0.52
PCDH9-204ENST00000544246 CEP85LQ5SZL2 805 aa11.79□□□□□ -0.52
PCDH9-204ENST00000544246 SEPT14Q6ZU15 432 aa11.79□□□□□ -0.52
PCDH9-204ENST00000544246 INTS8Q75QN2 995 aaKnown RBP11.79□□□□□ -0.52
PCDH9-204ENST00000544246 TNPO1Q92973 898 aaKnown RBP11.79□□□□□ -0.52
PCDH9-204ENST00000544246 VCX3BQ9H321 246 aa11.79□□□□□ -0.52
PCDH9-204ENST00000544246 CHD1O14646 1710 aa11.79□□□□□ -0.52
PCDH9-204ENST00000544246 TSPY2A6NKD2 308 aa11.79□□□□□ -0.52
PCDH9-204ENST00000544246 CACNA2D3Q8IZS8 1091 aa11.79□□□□□ -0.52
PCDH9-204ENST00000544246 VPS52Q8N1B4 723 aa11.79□□□□□ -0.52
PCDH9-204ENST00000544246 MTRF1LQ9UGC7 380 aaKnown RBP11.79□□□□□ -0.52
PCDH9-204ENST00000544246 MSH6P52701 1360 aa11.79□□□□□ -0.52
PCDH9-204ENST00000544246 RFC1P35251 1148 aaPredicted RBP11.79□□□□□ -0.52
PCDH9-204ENST00000544246 KRT83P78385 493 aa11.79□□□□□ -0.52
PCDH9-204ENST00000544246 GBP6Q6ZN66 633 aa11.79□□□□□ -0.52
PCDH9-204ENST00000544246 NCKAP5LQ9HCH0 1330 aa11.79□□□□□ -0.52
PCDH9-204ENST00000544246 ATP10BO94823 1461 aa11.79□□□□□ -0.52
PCDH9-204ENST00000544246 LUC7L2Q9Y383 392 aaKnown RBP11.79□□□□□ -0.52
PCDH9-204ENST00000544246 ARAP1Q96P48 1450 aa11.79□□□□□ -0.52
PCDH9-204ENST00000544246 LDHCP07864 332 aa11.79□□□□□ -0.52
PCDH9-204ENST00000544246 SPAG1Q07617 926 aa11.79□□□□□ -0.52
PCDH9-204ENST00000544246 TRAF3IP1Q8TDR0 691 aaPredicted RBP11.79□□□□□ -0.52
PCDH9-204ENST00000544246 CABP1Q9NZU7 370 aa11.79□□□□□ -0.52
PCDH9-204ENST00000544246 PPP1R7Q15435 360 aa11.78□□□□□ -0.52
PCDH9-204ENST00000544246 CCDC117Q8IWD4 279 aaPredicted RBP11.78□□□□□ -0.52
PCDH9-204ENST00000544246 GBP7Q8N8V2 638 aaPredicted RBP11.78□□□□□ -0.52
PCDH9-204ENST00000544246 TFIP11Q9UBB9 837 aaKnown RBP11.78□□□□□ -0.52
PCDH9-204ENST00000544246 TSPOAP1O95153 1857 aa11.78□□□□□ -0.52
PCDH9-204ENST00000544246 BAG3O95817 575 aa11.78□□□□□ -0.52
PCDH9-204ENST00000544246 UBE2HP62256 183 aa11.78□□□□□ -0.52
PCDH9-204ENST00000544246 MFSD6Q6ZSS7 791 aa11.78□□□□□ -0.52
PCDH9-204ENST00000544246 EVI5LQ96CN4 794 aa11.78□□□□□ -0.52
PCDH9-204ENST00000544246 DNAI1Q9UI46 699 aa11.78□□□□□ -0.52
PCDH9-204ENST00000544246 RTEL1-TNFRSF6BF6WH68 1400 aa11.78□□□□□ -0.52
PCDH9-204ENST00000544246 TUBB4AP04350 444 aa11.78□□□□□ -0.52
PCDH9-204ENST00000544246 SYKP43405 635 aa11.78□□□□□ -0.52
PCDH9-204ENST00000544246 CFAP70Q5T0N1 1121 aa11.78□□□□□ -0.52
PCDH9-204ENST00000544246 CCDC8Q9H0W5 538 aaPredicted RBP11.78□□□□□ -0.52
PCDH9-204ENST00000544246 VPS18Q9P253 973 aa11.78□□□□□ -0.52
PCDH9-204ENST00000544246 RAPGEF6Q8TEU7 1601 aa11.78□□□□□ -0.52
PCDH9-204ENST00000544246 ZNF518AQ6AHZ1 1483 aa11.78□□□□□ -0.52
PCDH9-204ENST00000544246 BMP15O95972 392 aa11.78□□□□□ -0.52
PCDH9-204ENST00000544246 NFE2L2Q16236 605 aa11.78□□□□□ -0.52
PCDH9-204ENST00000544246 DPH6Q7L8W6 267 aa11.78□□□□□ -0.52
PCDH9-204ENST00000544246 ORC3Q9UBD5 711 aaPredicted RBP11.78□□□□□ -0.52
PCDH9-204ENST00000544246 LMNTD2Q8IXW0 634 aa11.78□□□□□ -0.52
PCDH9-204ENST00000544246 ARFGAP2Q8N6H7 521 aa11.78□□□□□ -0.52
PCDH9-204ENST00000544246 TACC3Q9Y6A5 838 aa11.78□□□□□ -0.52
PCDH9-204ENST00000544246 ATP5DP30049 168 aa11.77□□□□□ -0.52
PCDH9-204ENST00000544246 GBP1P32455 592 aa11.77□□□□□ -0.52
PCDH9-204ENST00000544246 TUBB4BP68371 445 aa11.77□□□□□ -0.52
PCDH9-204ENST00000544246 MAK16Q9BXY0 300 aaKnown RBP11.77□□□□□ -0.52
PCDH9-204ENST00000544246 FCHSD2O94868 740 aa11.77□□□□□ -0.53
PCDH9-204ENST00000544246 NBPF7P0C2Y1 421 aaPredicted RBP11.77□□□□□ -0.53
PCDH9-204ENST00000544246 DUSP27Q5VZP5 1158 aa11.77□□□□□ -0.53
PCDH9-204ENST00000544246 NCOA7Q8NI08 942 aa11.77□□□□□ -0.53
PCDH9-204ENST00000544246 NCBP1Q09161 790 aaKnown RBP11.77□□□□□ -0.53
PCDH9-204ENST00000544246 NEDD9Q14511 834 aa11.77□□□□□ -0.53
PCDH9-204ENST00000544246 GEN1Q17RS7 908 aa11.77□□□□□ -0.53
PCDH9-204ENST00000544246 VTI1AQ96AJ9 217 aa11.77□□□□□ -0.53
PCDH9-204ENST00000544246 IFT74Q96LB3 600 aa11.77□□□□□ -0.53
PCDH9-204ENST00000544246 ZSCAN16Q9H4T2 348 aaPredicted RBP11.77□□□□□ -0.53
PCDH9-204ENST00000544246 TRMT112Q9UI30 125 aaKnown RBP11.77□□□□□ -0.53
PCDH9-204ENST00000544246 AFMP43652 599 aa11.77□□□□□ -0.53
PCDH9-204ENST00000544246 FYB2Q5VWT5 728 aa11.77□□□□□ -0.53
PCDH9-204ENST00000544246 CADPS2Q86UW7 1296 aa11.77□□□□□ -0.53
PCDH9-204ENST00000544246 ZEB2O60315 1214 aa11.76□□□□□ -0.53
PCDH9-204ENST00000544246 PLCH2O75038 1416 aa11.76□□□□□ -0.53
PCDH9-204ENST00000544246 SUPT6HQ7KZ85 1726 aaKnown RBP11.76□□□□□ -0.53
PCDH9-204ENST00000544246 TRAF1Q13077 416 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms